BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0008.p         (95 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776406.1| hypothetical protein Hsero_3010 [Herbaspiril...   116   9e-25

>ref|YP_003776406.1| hypothetical protein Hsero_3010 [Herbaspirillum seropedicae SmR1]
 gb|ADJ64498.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 94

 Score =  116 bits (291), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 57/95 (60%), Positives = 68/95 (71%), Gaps = 1/95 (1%)

Query: 1  MKRDKALMTDILTTLSTFGTSYGDIEKIQTNLATQNTPPELIQHHLRLLHDRGLVAVDIH 60
          MKRDKALM +IL  L++FGT YGD+EKIQ+ L  Q   PE+I HHLRLL+DRGL AVD+H
Sbjct: 1  MKRDKALMGEILKQLASFGTLYGDVEKIQSALPGQ-VAPEVILHHLRLLYDRGLAAVDMH 59

Query: 61 QFWRLTDQGYDVVENGGNLADSPSDTTRKARGFDN 95
           FWR+TDQGYD +E GG+L           RG DN
Sbjct: 60 NFWRVTDQGYDALEAGGDLFSKHDAPPPGHRGIDN 94