BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0023.0066.p (329 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777245.1| transcription regulator protein [Herbaspiril... 582 e-164 ref|ZP_08274374.1| transcriptional regulator, LysR family [Oxalo... 532 e-149 ref|YP_004754630.1| LysR family transcriptional regulator [Colli... 516 e-144 ref|ZP_04762997.1| transcriptional regulator, LysR family [Acido... 396 e-108 ref|YP_724988.1| LysR family transcriptional regulator [Ralstoni... 396 e-108 >ref|YP_003777245.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65337.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 331 Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust. Identities = 272/310 (87%), Positives = 293/310 (94%) Query: 1 METKWLEDFISLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLGSDLIDRTSYPTRLTAA 60 ME+KWLEDF+SLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLG+DLIDRTSYPTRLTAA Sbjct: 1 MESKWLEDFVSLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLGTDLIDRTSYPTRLTAA 60 Query: 61 GEVFYEQAVEMLGQINNTRALLRGKRPAAQTTVDFAVPHTLSLTYFPKWLSSLESGFGAL 120 GEVFYEQAV MLGQINNTRALLRGKRP AQTT+DFAVPHTLSLTY PKWLS+LESGFGA+ Sbjct: 61 GEVFYEQAVAMLGQINNTRALLRGKRPTAQTTIDFAVPHTLSLTYMPKWLSALESGFGAI 120 Query: 121 NTRLIALNVHDAVMTIVEGGCDLLLCYHHPRQPVQLDSSRYDMLSMGKESVRPYSRCDRT 180 NTRLIALNVHDAVMTIVEGGCDLLLCYHHPRQPVQLDSSRYDML+MG E++RPYSRCDR Sbjct: 121 NTRLIALNVHDAVMTIVEGGCDLLLCYHHPRQPVQLDSSRYDMLTMGTETLRPYSRCDRN 180 Query: 181 GKPDYVFPGSSKAPLPFLSYTPNAYLGRMVELILTDAKKPLHLEKHYETDMSESLKMMAL 240 GKPDYVFPGS+KAP+PFLSYT NAYLGRMVEL++ D K+PLHL+KHYETDMSESLKMMAL Sbjct: 181 GKPDYVFPGSAKAPVPFLSYTSNAYLGRMVELMMADTKRPLHLDKHYETDMSESLKMMAL 240 Query: 241 EGHGVAFLPESSVTREVRNKQLARTDGAQGEWEVEMEIRLYRERPTPQRSGKVVVARLWD 300 EGHGVAFLPESSV REVRN+QLARTD GEWEVEMEIRLYRERPT QR+GK +VARLW+ Sbjct: 241 EGHGVAFLPESSVVREVRNRQLARTDVPSGEWEVEMEIRLYRERPTAQRAGKALVARLWE 300 Query: 301 YLQELEEGRK 310 YL EL+ R+ Sbjct: 301 YLVELDAQRQ 310 >ref|ZP_08274374.1| transcriptional regulator, LysR family [Oxalobacteraceae bacterium IMCC9480] gb|EGF32152.1| transcriptional regulator, LysR family [Oxalobacteraceae bacterium IMCC9480] Length = 324 Score = 532 bits (1371), Expect = e-149, Method: Compositional matrix adjust. Identities = 253/322 (78%), Positives = 285/322 (88%), Gaps = 6/322 (1%) Query: 1 METKWLEDFISLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLGSDLIDRTSYPTRLTAA 60 METKWLEDF+SLAETRSFSRSA+LRHVTQPAFSRRIQSLEAWLG+DLIDRTSYPTRLT A Sbjct: 1 METKWLEDFLSLAETRSFSRSAQLRHVTQPAFSRRIQSLEAWLGADLIDRTSYPTRLTPA 60 Query: 61 GEVFYEQAVEMLGQINNTRALLRGKRPAAQTTVDFAVPHTLSLTYFPKWLSSLESGFGAL 120 GE+FYEQA+EMLGQINN RALLRGKRPAAQTTVDFAVPHTLSLTY PKW+++L++ FG + Sbjct: 61 GEIFYEQAMEMLGQINNARALLRGKRPAAQTTVDFAVPHTLSLTYMPKWMTALDADFGPI 120 Query: 121 NTRLIALNVHDAVMTIVEGGCDLLLCYHHPRQPVQLDSSRYDMLSMGKESVRPYSRCDRT 180 NTRL+ALNVHDAVM++VEGGCDLLLCYHHPRQPVQLDS+RYDML +G ES+ PY+RCDRT Sbjct: 121 NTRLMALNVHDAVMSMVEGGCDLLLCYHHPRQPVQLDSARYDMLVLGAESLCPYARCDRT 180 Query: 181 GKPDYVFPGSSKAPLPFLSYTPNAYLGRMVELILTDAKKPLHLEKHYETDMSESLKMMAL 240 G PD+V PGS+ APLPFLSYT NAYLGRMVELIL DAK PLHL+K YETDM+E LKMMAL Sbjct: 181 GVPDFVLPGSALAPLPFLSYTTNAYLGRMVELILADAKHPLHLQKCYETDMAEGLKMMAL 240 Query: 241 EGHGVAFLPESSVTREVRNKQLARTDGAQGEWEVEMEIRLYRERPTPQRSGKVVVARLWD 300 EG GV FLPESSVTRE+R KQLAR DG Q EW+VEMEIRLYRE+P+ R GK +V RLWD Sbjct: 241 EGRGVVFLPESSVTRELRQKQLARADGGQPEWQVEMEIRLYREKPSVGRPGKPLVGRLWD 300 Query: 301 YL--QELEE----GRKAAVART 316 YL Q+++ GRK A+ + Sbjct: 301 YLVQQQMKTQKPPGRKLAMKKV 322 >ref|YP_004754630.1| LysR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AAT42433.1| transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK63807.1| transcriptional regulator, LysR family [Collimonas fungivorans Ter331] Length = 356 Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust. Identities = 245/310 (79%), Positives = 272/310 (87%), Gaps = 3/310 (0%) Query: 1 METKWLEDFISLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLGSDLIDRTSYPTRLTAA 60 ME+KWLEDFISLAET SFSRSAELRHVTQPAFSRRIQSLEAWLG+DLIDRTSYPTRLTAA Sbjct: 24 MESKWLEDFISLAETHSFSRSAELRHVTQPAFSRRIQSLEAWLGADLIDRTSYPTRLTAA 83 Query: 61 GEVFYEQAVEMLGQINNTRALLRGKRPAAQTTVDFAVPHTLSLTYFPKWLSSLESGFGAL 120 GEVFYEQA+EMLGQINN RAL+RGKRP A +TVDFAVPHTLSLTY P+W+ LE GFG L Sbjct: 84 GEVFYEQALEMLGQINNARALMRGKRPTALSTVDFAVPHTLSLTYVPRWIRLLEDGFGPL 143 Query: 121 NTRLIALNVHDAVMTIVEGGCDLLLCYHHPRQPVQLDSSRYDMLSMGKESVRPYSRCDRT 180 NTRL+ALNVHDAVM +V+GGCDLLLCYHHPRQPVQLD+ RYD++++G E +R Y+ C++ Sbjct: 144 NTRLLALNVHDAVMAMVDGGCDLLLCYHHPRQPVQLDTGRYDLITLGSEVLRAYAHCNKA 203 Query: 181 GKPDYVFPGSSKAPLPFLSYTPNAYLGRMVELILTDAKKPLHLEKHYETDMSESLKMMAL 240 G PDYVFPGS+ APLPFLSYT NAYLGRMVELIL DAKKPL+LEK YETDM+E LKMMAL Sbjct: 204 GVPDYVFPGSAGAPLPFLSYTSNAYLGRMVELILADAKKPLYLEKRYETDMAEGLKMMAL 263 Query: 241 EGHGVAFLPESSVTREVRNKQLART---DGAQGEWEVEMEIRLYRERPTPQRSGKVVVAR 297 EGHGVAFLPES+VTREV+ KQLAR D + EWE MEIRLYRERPT QR GK VVAR Sbjct: 264 EGHGVAFLPESAVTREVKLKQLARVDRIDDSAPEWEATMEIRLYRERPTVQRPGKPVVAR 323 Query: 298 LWDYLQELEE 307 LW YL + +E Sbjct: 324 LWAYLLQQQE 333 >ref|ZP_04762997.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN] gb|EER60191.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN] Length = 309 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 187/310 (60%), Positives = 233/310 (75%), Gaps = 9/310 (2%) Query: 1 METKWLEDFISLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLGSDLIDRTSYPTRLTAA 60 METKWLEDF+SLAETRSFSRSA+LRHVTQPAFSRRIQ+LEAW G+DL+DR+SYPTRLT A Sbjct: 1 METKWLEDFVSLAETRSFSRSAQLRHVTQPAFSRRIQALEAWAGTDLVDRSSYPTRLTPA 60 Query: 61 GEVFYEQAVEMLGQINNTRALLRGKRPAAQTTVDFAVPHTLSLTYFPKWLSSLESGFGAL 120 G+ Y+QA+EML + NTRA+LR A + ++FAVPHTL+ T+FP W+SSL FG L Sbjct: 61 GKTLYDQALEMLQAMQNTRAMLRTHSSAGKDMIEFAVPHTLAFTFFPAWVSSLHEKFGPL 120 Query: 121 NTRLIALNVHDAVMTIVEGGCDLLLCYHHPRQPVQLDSSRYDMLSMGKESVRPYSRCDRT 180 +RLIALNVHDAVM +VEGGCDLL+ YHHP QP QLD+ RY+M+S+G+E + PYS+ D Sbjct: 121 KSRLIALNVHDAVMRLVEGGCDLLITYHHPSQPFQLDADRYEMVSLGQEVLSPYSKADAD 180 Query: 181 GKPDYVFPGSSKAPLPFLSYTPNAYLGRMVELILTDAKKPLHLEKHYETDMSESLKMMAL 240 G+P + PG + PLP+L Y P AYLGRM ELIL ++ +HL++ YETDM+E LK MAL Sbjct: 181 GQPLFSLPGRAGQPLPYLGYAPGAYLGRMTELILKESGTAIHLDRVYETDMAEGLKAMAL 240 Query: 241 EGHGVAFLPESSVTREVRNKQLART-----DGAQGEWEVEMEIRLYRERPTPQRSGKVVV 295 EGHGVAFLP S+V +EVR ++L DG Q + M++R YRERP + + K Sbjct: 241 EGHGVAFLPHSAVKKEVRARKLVSAQPPDHDGLQ----IVMDVRAYRERPGGKEAPKGTA 296 Query: 296 ARLWDYLQEL 305 LW YLQ L Sbjct: 297 QALWTYLQNL 306 >ref|YP_724988.1| LysR family transcriptional regulator [Ralstonia eutropha H16] emb|CAJ91620.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16] Length = 327 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 192/320 (60%), Positives = 243/320 (75%), Gaps = 9/320 (2%) Query: 1 METKWLEDFISLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLGSDLIDRTSYPTRLTAA 60 ME KWLEDF+SLAET SFSRSAELRHVTQPAFSRRIQSLEAW+G++LIDR+SYPT LT A Sbjct: 1 MEIKWLEDFVSLAETHSFSRSAELRHVTQPAFSRRIQSLEAWVGTELIDRSSYPTSLTPA 60 Query: 61 GEVFYEQAVEMLGQINNTRALLRGKRPAAQTTVDFAVPHTLSLTYFPKWLSSLESGFGAL 120 G+VFYEQA+ ML Q++ TRAL+RG+R A ++FAVPHTLSLT+FP+WL +LE G L Sbjct: 61 GKVFYEQALAMLAQVSETRALMRGQRSANAQVLEFAVPHTLSLTFFPEWLKALERRIGTL 120 Query: 121 NTRLIALNVHDAVMTIVEGGCDLLLCYHHPRQPVQLDSSRYDMLSMGKESVRPYSRCDRT 180 RL ALNVHDAV+ +VEGGCDL++ YHH RQ +QLD +RYDML +G E + PYS D Sbjct: 121 PCRLRALNVHDAVLMLVEGGCDLVMVYHHARQAIQLDPARYDMLVLGTERLSPYSVPDAA 180 Query: 181 GKPDYVFPGSSKAPLPFLSYTPNAYLGRMVELILTDAKKPLHLEKHYETDMSESLKMMAL 240 GKP + PG+ K P+PFLSYTPNA+LGRMV+L+L D + L L+K YETDM+E+LK+MAL Sbjct: 181 GKPQFRLPGTDKKPVPFLSYTPNAFLGRMVDLLLADTSEALKLDKCYETDMAEALKVMAL 240 Query: 241 EGHGVAFLPESSVTREVRNKQLARTDGAQG-EWEVEMEIRLYRERP----TPQRSG---- 291 GHG+AFLPES+V +V +L R + A+G ++MEIRLYRERP +R+G Sbjct: 241 AGHGMAFLPESAVREDVAAGRLVRAESARGLPLSIDMEIRLYRERPGENGNERRAGARRK 300 Query: 292 KVVVARLWDYLQELEEGRKA 311 + +V ++W L + + A Sbjct: 301 RQLVDQVWSTLSAAQSAQPA 320