BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0051.p         (111 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001351984.1| 50S ribosomal protein L13 [Janthinobacterium...   223   6e-57
ref|YP_003777236.1| 50S ribosomal protein L13 [Herbaspirillum se...   223   1e-56
ref|YP_004754614.1| 50S ribosomal protein L13p (L13Ae) [Collimon...   219   1e-55
ref|ZP_08275136.1| LSU ribosomal protein L13p (L13Ae) [Oxalobact...   217   5e-55
ref|YP_001098598.1| 50S ribosomal protein L13 [Herminiimonas ars...   217   6e-55

>ref|YP_001351984.1| 50S ribosomal protein L13 [Janthinobacterium sp. Marseille]
 sp|A6SUN7.1|RL13_JANMA RecName: Full=50S ribosomal protein L13
 gb|ABR88804.1| large subunit ribosomal protein L13 [Janthinobacterium sp.
           Marseille]
          Length = 142

 Score =  223 bits (569), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 108/111 (97%), Positives = 109/111 (98%)

Query: 1   VALRLRGKHKPEFTPHVDTGDFIVVINAGKLRVTGTKATEKTYYRHSGYPGGIYETNFLK 60
           VALRLRGKHKPEFTPHVDTGDFIVVINAGKLRVTGTKATEKTYYRHSGYPGGIYETNFLK
Sbjct: 32  VALRLRGKHKPEFTPHVDTGDFIVVINAGKLRVTGTKATEKTYYRHSGYPGGIYETNFLK 91

Query: 61  MQQRFPGRALEKAVKGMLPKGPLGYAMIKKLKVYADGNHPHAAQQPKALEL 111
           MQQRFPGRALEKAVKGMLPKGPLGYAMIKKLKVYA+  HPHAAQQPKALEL
Sbjct: 92  MQQRFPGRALEKAVKGMLPKGPLGYAMIKKLKVYAEATHPHAAQQPKALEL 142


>ref|YP_003777236.1| 50S ribosomal protein L13 [Herbaspirillum seropedicae SmR1]
 gb|ADJ65328.1| 50S ribosomal subunit L13 protein [Herbaspirillum seropedicae SmR1]
          Length = 142

 Score =  223 bits (567), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 107/111 (96%), Positives = 109/111 (98%)

Query: 1   VALRLRGKHKPEFTPHVDTGDFIVVINAGKLRVTGTKATEKTYYRHSGYPGGIYETNFLK 60
           VALRLRGKHKPEFTPHVDTGDFIVV+NAGKLRVTGTKATEKTY+RHSGYPGGIYETNFLK
Sbjct: 32  VALRLRGKHKPEFTPHVDTGDFIVVVNAGKLRVTGTKATEKTYFRHSGYPGGIYETNFLK 91

Query: 61  MQQRFPGRALEKAVKGMLPKGPLGYAMIKKLKVYADGNHPHAAQQPKALEL 111
           MQQRFPGRALEKAVKGMLPKGPLGYAMIKKLKVYADGNHPHAAQQPK L L
Sbjct: 92  MQQRFPGRALEKAVKGMLPKGPLGYAMIKKLKVYADGNHPHAAQQPKPLAL 142


>ref|YP_004754614.1| 50S ribosomal protein L13p (L13Ae) [Collimonas fungivorans Ter331]
 gb|AEK63791.1| LSU ribosomal protein L13p (L13Ae) [Collimonas fungivorans Ter331]
          Length = 142

 Score =  219 bits (558), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 105/111 (94%), Positives = 108/111 (97%)

Query: 1   VALRLRGKHKPEFTPHVDTGDFIVVINAGKLRVTGTKATEKTYYRHSGYPGGIYETNFLK 60
           VALRLRGKHKPEFTPHVDTGDFIVVINAGKLRVTG KAT+KTY+RHSGYPGGIYETNF K
Sbjct: 32  VALRLRGKHKPEFTPHVDTGDFIVVINAGKLRVTGAKATDKTYFRHSGYPGGIYETNFQK 91

Query: 61  MQQRFPGRALEKAVKGMLPKGPLGYAMIKKLKVYADGNHPHAAQQPKALEL 111
           MQQRFPGRALEKAVKGMLPKGPLGYAMIKKLKVYADG+HPH AQQPKALEL
Sbjct: 92  MQQRFPGRALEKAVKGMLPKGPLGYAMIKKLKVYADGSHPHTAQQPKALEL 142


>ref|ZP_08275136.1| LSU ribosomal protein L13p (L13Ae) [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF31395.1| LSU ribosomal protein L13p (L13Ae) [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 142

 Score =  217 bits (552), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 102/111 (91%), Positives = 107/111 (96%)

Query: 1   VALRLRGKHKPEFTPHVDTGDFIVVINAGKLRVTGTKATEKTYYRHSGYPGGIYETNFLK 60
           VALRLRGKHKPEFTPHVDTGDFI+VINAGKLRVTG+KATE+TYYRHSGYPGGIYETNFLK
Sbjct: 32  VALRLRGKHKPEFTPHVDTGDFIIVINAGKLRVTGSKATERTYYRHSGYPGGIYETNFLK 91

Query: 61  MQQRFPGRALEKAVKGMLPKGPLGYAMIKKLKVYADGNHPHAAQQPKALEL 111
           MQQRFPGRALEKAVKGMLPKGPLGYAMI KLKVYA+  HPH+AQQPK LEL
Sbjct: 92  MQQRFPGRALEKAVKGMLPKGPLGYAMITKLKVYAEATHPHSAQQPKVLEL 142


>ref|YP_001098598.1| 50S ribosomal protein L13 [Herminiimonas arsenicoxydans]
 sp|A4G1T2.1|RL13_HERAR RecName: Full=50S ribosomal protein L13
 emb|CAL60469.1| 50S ribosomal protein L13 [Herminiimonas arsenicoxydans]
          Length = 142

 Score =  217 bits (552), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 104/111 (93%), Positives = 108/111 (97%)

Query: 1   VALRLRGKHKPEFTPHVDTGDFIVVINAGKLRVTGTKATEKTYYRHSGYPGGIYETNFLK 60
           VALRLRGKHKPEFTPHVDTGDFIVV+NAGKLRVTGTKAT+KTYYRHSGYPGGIYETNF K
Sbjct: 32  VALRLRGKHKPEFTPHVDTGDFIVVVNAGKLRVTGTKATDKTYYRHSGYPGGIYETNFKK 91

Query: 61  MQQRFPGRALEKAVKGMLPKGPLGYAMIKKLKVYADGNHPHAAQQPKALEL 111
           MQ+RFPGRALEKAVKGMLPKGPLGYAMIKKLKVYA+  HPHAAQQPKALEL
Sbjct: 92  MQERFPGRALEKAVKGMLPKGPLGYAMIKKLKVYAEETHPHAAQQPKALEL 142