BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0046.p         (133 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777232.1| integral membrane protein [Herbaspirillum se...   221   2e-56
ref|ZP_08275140.1| Integral membrane protein CcmA involved in ce...   191   3e-47
ref|YP_004754610.1| hypothetical protein CFU_3964 [Collimonas fu...   190   7e-47
ref|YP_001098602.1| hypothetical protein HEAR0244 [Herminiimonas...   178   2e-43
ref|YP_001351988.1| hypothetical protein mma_0298 [Janthinobacte...   174   5e-42

>ref|YP_003777232.1| integral membrane protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ65324.1| integral membrane protein involved in cell shape determination
           protein [Herbaspirillum seropedicae SmR1]
          Length = 131

 Score =  221 bits (564), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 111/129 (86%), Positives = 118/129 (91%)

Query: 1   MLGRKSKSTIDSLIGISTSIHGDVHFKGGLRIDGHIKGNINAEAGQPSVLVISEHAKIVG 60
           M  RK+KSTIDSLIG+STSI GDV FKGGLRIDGHI GNINAE GQPSVLVISEHAK+VG
Sbjct: 1   MFTRKTKSTIDSLIGMSTSIKGDVGFKGGLRIDGHINGNINAETGQPSVLVISEHAKVVG 60

Query: 61  EIRAVHLIVNGEIIGDVHSVELLELQPKARITGDVYYKALEMHGGALVSGKLSHGQTEEA 120
           ++ A HLIVNGEIIGDVHS ELLELQPKARITG+VYYKALEMHGGALVSGKLSH Q EEA
Sbjct: 61  QVHAAHLIVNGEIIGDVHSSELLELQPKARITGNVYYKALEMHGGALVSGKLSHDQAEEA 120

Query: 121 PVLKLAASA 129
           PVLKLAAS+
Sbjct: 121 PVLKLAASS 129


>ref|ZP_08275140.1| Integral membrane protein CcmA involved in cell shape determination
           [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF31399.1| Integral membrane protein CcmA involved in cell shape determination
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 134

 Score =  191 bits (485), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 98/126 (77%), Positives = 108/126 (85%), Gaps = 1/126 (0%)

Query: 1   MLGRKSKSTIDSLIGISTSIHGDVHFKGGLRIDGHIKGNINAEAGQPSVLVISEHAKIVG 60
           M GRKSKSTIDSLIGISTSI GDVHFKGGLRIDGH+KGN+ A  G+ S+LVISE AKI G
Sbjct: 1   MFGRKSKSTIDSLIGISTSIVGDVHFKGGLRIDGHVKGNVIANPGETSMLVISEQAKIEG 60

Query: 61  EIRAVHLIVNGEIIGDVHSVELLELQPKARITGDVYYKALEMHGGALVSGKLSHGQTEEA 120
           ++R  HL+VNGEI+G V S ELLELQPKARITGDVYYKALEMHGGA+VSGKL+H    E 
Sbjct: 61  DVRVAHLVVNGEIVGQVFSAELLELQPKARITGDVYYKALEMHGGAVVSGKLTHDLVGE- 119

Query: 121 PVLKLA 126
           PVLKLA
Sbjct: 120 PVLKLA 125


>ref|YP_004754610.1| hypothetical protein CFU_3964 [Collimonas fungivorans Ter331]
 gb|AEK63787.1| hypothetical protein CFU_3964 [Collimonas fungivorans Ter331]
          Length = 131

 Score =  190 bits (482), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 95/128 (74%), Positives = 107/128 (83%)

Query: 1   MLGRKSKSTIDSLIGISTSIHGDVHFKGGLRIDGHIKGNINAEAGQPSVLVISEHAKIVG 60
           M  RK+KSTIDSLIG STSI GDVHFKGGLRIDG++KGN+ AE G+ SVLVISE AK+ G
Sbjct: 1   MFNRKAKSTIDSLIGSSTSIEGDVHFKGGLRIDGNVKGNVVAEPGETSVLVISESAKVEG 60

Query: 61  EIRAVHLIVNGEIIGDVHSVELLELQPKARITGDVYYKALEMHGGALVSGKLSHGQTEEA 120
           ++R  HL+VNGEI G+V+S ELLELQPKARITGDV YKALEMH GALVSGKL+H Q    
Sbjct: 61  DVRVAHLVVNGEISGNVYSAELLELQPKARITGDVNYKALEMHSGALVSGKLTHEQNVAE 120

Query: 121 PVLKLAAS 128
           PVLKLA S
Sbjct: 121 PVLKLAMS 128


>ref|YP_001098602.1| hypothetical protein HEAR0244 [Herminiimonas arsenicoxydans]
 emb|CAL60473.1| Conserved hypothetical protein, putative protein CcmA
           [Herminiimonas arsenicoxydans]
          Length = 134

 Score =  178 bits (452), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 89/126 (70%), Positives = 108/126 (85%), Gaps = 1/126 (0%)

Query: 1   MLGRKSKSTIDSLIGISTSIHGDVHFKGGLRIDGHIKGNINAEAGQPSVLVISEHAKIVG 60
           M  RK+KSTIDSLIG +T+I G+VHFKGGLRIDG +KG++ A+A + S+LVISEHAK+ G
Sbjct: 1   MFSRKTKSTIDSLIGAATNIAGNVHFKGGLRIDGCVKGDVIADADETSMLVISEHAKVEG 60

Query: 61  EIRAVHLIVNGEIIGDVHSVELLELQPKARITGDVYYKALEMHGGALVSGKLSHGQTEEA 120
           E+R  HL+VNG I+G V+S ELLELQPKARITGDV+YKALEMHGGA+VSGKL+H   EE 
Sbjct: 61  EVRVAHLLVNGVIVGPVYSSELLELQPKARITGDVHYKALEMHGGAVVSGKLTHDTMEE- 119

Query: 121 PVLKLA 126
           P+LKLA
Sbjct: 120 PILKLA 125


>ref|YP_001351988.1| hypothetical protein mma_0298 [Janthinobacterium sp. Marseille]
 gb|ABR90401.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 133

 Score =  174 bits (440), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 89/126 (70%), Positives = 105/126 (83%), Gaps = 2/126 (1%)

Query: 1   MLGRKSKSTIDSLIGISTSIHGDVHFKGGLRIDGHIKGNINAEAGQPSVLVISEHAKIVG 60
           M  RK+KSTIDSLIG ST I G+VHFKGGLRIDG +KG++ A+A + S+LVISEHA++ G
Sbjct: 1   MFSRKAKSTIDSLIGASTIISGNVHFKGGLRIDGCVKGDVIAQADEISMLVISEHARVEG 60

Query: 61  EIRAVHLIVNGEIIGDVHSVELLELQPKARITGDVYYKALEMHGGALVSGKLSHGQTEEA 120
           E+R  HL+VNGEI+G V S ELLELQPKARITGDV YKALEMHGGA+VSGKL+H   E  
Sbjct: 61  EVRVAHLLVNGEIVGPVFSSELLELQPKARITGDVNYKALEMHGGAVVSGKLTHEVDE-- 118

Query: 121 PVLKLA 126
           P+LKLA
Sbjct: 119 PILKLA 124