BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0023.0039.p (173 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004751452.1| type IV pili signal transduction protein [Co... 176 1e-42 ref|YP_001354644.1| PilI twitching motility protein [Janthinobac... 165 2e-39 emb|CAL62862.2| putative chemotaxis signal transduction protein ... 155 2e-36 ref|YP_001100983.1| PilI protein involved in twitching motility ... 136 1e-30 ref|ZP_08275962.1| type IV pili signal transduction protein PilI... 135 2e-30 >ref|YP_004751452.1| type IV pili signal transduction protein [Collimonas fungivorans Ter331] gb|AEK60629.1| type IV pili signal transduction protein [Collimonas fungivorans Ter331] Length = 197 Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 88/168 (52%), Positives = 117/168 (69%), Gaps = 3/168 (1%) Query: 9 RYGRLHEFQARLLERMEAARDGSGMRDSRLGVMIGDRRCLVNLREAGEIVNLIAVTKVPL 68 R RL EFQ+ LLERM+AAR GS ++S+LG++IG R L+NL+EAGEIV + +++VPL Sbjct: 30 RRSRLREFQSHLLERMQAARSGSEAQESQLGLLIGQSRWLLNLQEAGEIVAVDQISRVPL 89 Query: 69 ARDWYLGLANVRGNLIGVVDLDRFLGGPSQTIGKESRVLVVSLALSGNTGFLLSRVLGLR 128 DWYLGL+NVRG LI V+D RF G I KE R++ + + S N+G L+SRVLGLR Sbjct: 90 THDWYLGLSNVRGTLISVIDFARFQGHGVTQIDKECRIVAFAPSFSFNSGLLVSRVLGLR 149 Query: 129 HIQEMTEQQSGD---CGRRRYLDGDLNEWVEISLAEIVEDPRFLQVGL 173 ++ +MT Q +RYLD D W E+S+A+I+ DPRFLQVGL Sbjct: 150 NVAQMTLQTPDSLDQASAKRYLDSDSQLWTELSMAQILHDPRFLQVGL 197 >ref|YP_001354644.1| PilI twitching motility protein [Janthinobacterium sp. Marseille] gb|ABR90451.1| PilI twitching motility protein [Janthinobacterium sp. Marseille] Length = 191 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 81/170 (47%), Positives = 118/170 (69%), Gaps = 5/170 (2%) Query: 9 RYGRLHEFQARLLERMEAARDGSGMRDSRLGVMIGDRRCLVNLREAGEIVNLIAVTKVPL 68 R RL EFQA+L+ERM+ AR G+ R ++LGV+IG++R L+NL+ AGEIV + +T VPL Sbjct: 22 RRTRLREFQAQLVERMQTARSGADTRVNQLGVLIGEQRWLLNLQTAGEIVAVGTITPVPL 81 Query: 69 ARDWYLGLANVRGNLIGVVDLDRFLGGPSQTIGKESRVLVVSLALSGNTGFLLSRVLGLR 128 + W+LGL+N+RGNLI V+D RF G P+ I K+SR++ AL+ N+G L+SRVLGLR Sbjct: 82 TQPWFLGLSNIRGNLISVIDFARFQGLPATNIEKDSRIVAFGPALAFNSGLLVSRVLGLR 141 Query: 129 HIQEMT-----EQQSGDCGRRRYLDGDLNEWVEISLAEIVEDPRFLQVGL 173 ++ EM + +RYLD + W E+ L+ ++++P+FLQVGL Sbjct: 142 NVAEMQLHADDADAAPPWASKRYLDQESQVWTELDLSSVIQNPQFLQVGL 191 >emb|CAL62862.2| putative chemotaxis signal transduction protein CheW-like, putative PilI [Herminiimonas arsenicoxydans] Length = 190 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 80/169 (47%), Positives = 113/169 (66%), Gaps = 4/169 (2%) Query: 9 RYGRLHEFQARLLERMEAARDGSGMRDSRLGVMIGDRRCLVNLREAGEIVNLIAVTKVPL 68 R RL EFQA+L+ERM+ AR G R ++LGVMIG R L++L+ AGEIV++ +T VPL Sbjct: 22 RRTRLREFQAQLVERMQTARSGEDTRINQLGVMIGGNRWLLDLQTAGEIVSVGTITAVPL 81 Query: 69 ARDWYLGLANVRGNLIGVVDLDRFLGGPSQTIGKESRVLVVSLALSGNTGFLLSRVLGLR 128 + W+LGLAN+RGNLI V+D F G I K+ R++ S ALS N+G L+SRVLGL Sbjct: 82 TQPWFLGLANIRGNLISVIDFAGFQGQAPTAIDKDCRIVAFSPALSFNSGLLVSRVLGLH 141 Query: 129 HIQEMTEQQSGDCG----RRRYLDGDLNEWVEISLAEIVEDPRFLQVGL 173 ++ EM Q G+ +RY+D + W E+ L+ ++++P+FL VGL Sbjct: 142 NVAEMERQADGEPSAPWVSKRYIDRESQVWRELDLSLVIQNPQFLHVGL 190 >ref|YP_001100983.1| PilI protein involved in twitching motility [Herminiimonas arsenicoxydans] Length = 154 Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 70/154 (45%), Positives = 101/154 (65%), Gaps = 4/154 (2%) Query: 24 MEAARDGSGMRDSRLGVMIGDRRCLVNLREAGEIVNLIAVTKVPLARDWYLGLANVRGNL 83 M+ AR G R ++LGVMIG R L++L+ AGEIV++ +T VPL + W+LGLAN+RGNL Sbjct: 1 MQTARSGEDTRINQLGVMIGGNRWLLDLQTAGEIVSVGTITAVPLTQPWFLGLANIRGNL 60 Query: 84 IGVVDLDRFLGGPSQTIGKESRVLVVSLALSGNTGFLLSRVLGLRHIQEMTEQQSGDCG- 142 I V+D F G I K+ R++ S ALS N+G L+SRVLGL ++ EM Q G+ Sbjct: 61 ISVIDFAGFQGQAPTAIDKDCRIVAFSPALSFNSGLLVSRVLGLHNVAEMERQADGEPSA 120 Query: 143 ---RRRYLDGDLNEWVEISLAEIVEDPRFLQVGL 173 +RY+D + W E+ L+ ++++P+FL VGL Sbjct: 121 PWVSKRYIDRESQVWRELDLSLVIQNPQFLHVGL 154 >ref|ZP_08275962.1| type IV pili signal transduction protein PilI [Oxalobacteraceae bacterium IMCC9480] gb|EGF30562.1| type IV pili signal transduction protein PilI [Oxalobacteraceae bacterium IMCC9480] Length = 188 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 73/166 (43%), Positives = 105/166 (63%), Gaps = 2/166 (1%) Query: 9 RYGRLHEFQARLLERMEAARDGSGMRDSRLGVMIGDRRCLVNLREAGEIVNLIAVTKVPL 68 R R+ +FQ++L RM+ AR + + S+LG+ IG CL++LREAGEIV + + VPL Sbjct: 22 RRQRMRDFQSQLSARMQQARISTREQTSQLGLQIGAEHCLLSLREAGEIVAVGTIAAVPL 81 Query: 69 ARDWYLGLANVRGNLIGVVDLDRFLGGPSQTIGKESRVLVVSLALSGNTGFLLSRVLGLR 128 + W+LGLANVRGNL+ VVDL + G I K+ R++ +L+ N L+SRVLGLR Sbjct: 82 TQPWFLGLANVRGNLVSVVDLAQLRGHGPTVIDKQCRIIAFGPSLAFNGAVLVSRVLGLR 141 Query: 129 HIQEMTEQQSGDCGR--RRYLDGDLNEWVEISLAEIVEDPRFLQVG 172 + MT Q + GR RY D D W ++ ++ ++ DP+FLQVG Sbjct: 142 DLAAMTLQPAPVQGRMANRYRDTDGVTWRQLDVSALIADPQFLQVG 187