BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0023.0038.p (200 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777226.1| twitching motility transmembrane protein [He... 198 5e-49 ref|YP_001354643.1| PilJ twitching motility protein [Janthinobac... 174 9e-42 ref|YP_001100982.1| twitching motility transmembrane protein [He... 173 2e-41 ref|YP_004751453.1| twitching motility protein [Collimonas fungi... 172 3e-41 ref|ZP_08274269.1| twitching motility protein PilJ [Oxalobactera... 144 6e-33 >ref|YP_003777226.1| twitching motility transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ65318.1| twitching motility transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 753 Score = 198 bits (503), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 99/159 (62%), Positives = 117/159 (73%) Query: 42 RLPFIGRQSLRAQTRILLLLLILALLSMFFFLWLGSKHYIHASLQAHITSDLVMHSQRIG 101 RLP++ R +LR QTRILL +L L+L +F FLWLGS+ YIHA+LQ HI SDLVMHSQR+G Sbjct: 58 RLPYLHRFALRTQTRILLGILALSLAGLFLFLWLGSRLYIHATLQTHIASDLVMHSQRLG 117 Query: 102 KAVPNAIQGNREAFNQLTESRKEFNQGLNVLMLGGEYQGYAIRKPEPEMRAVLVDVQKIW 161 KAVPNAIQGN EAF QL +SR EFN+GL +L GG YQG I PEP M+ L + ++W Sbjct: 118 KAVPNAIQGNPEAFVQLAQSRVEFNRGLLLLTSGGTYQGNTIGLPEPAMKPALESITRLW 177 Query: 162 DHTDKAASTILKLQPELTGFGVTLARLRLLSPNLLDLSE 200 +D AA IL LQ ELTGFG TL RL L P +LDLSE Sbjct: 178 RRSDLAAENILALQKELTGFGATLKRLNQLLPVMLDLSE 216 >ref|YP_001354643.1| PilJ twitching motility protein [Janthinobacterium sp. Marseille] gb|ABR90003.1| PilJ twitching motility protein [Janthinobacterium sp. Marseille] Length = 760 Score = 174 bits (440), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 86/158 (54%), Positives = 108/158 (68%) Query: 43 LPFIGRQSLRAQTRILLLLLILALLSMFFFLWLGSKHYIHASLQAHITSDLVMHSQRIGK 102 LP IG+ L+ Q RILL+ L +L F+WL + + S Q I D +MHSQR+GK Sbjct: 67 LPLIGKLPLQQQVRILLIALGSSLALGAVFVWLNADYSALTSTQTQIAGDALMHSQRVGK 126 Query: 103 AVPNAIQGNREAFNQLTESRKEFNQGLNVLMLGGEYQGYAIRKPEPEMRAVLVDVQKIWD 162 A PNAIQGN+EAF QL +SRKEFN L +L GG YQG I P+ +M A+L + QK+W Sbjct: 127 ATPNAIQGNKEAFKQLADSRKEFNSDLTILSKGGVYQGRNISPPDAQMDAMLKETQKLWT 186 Query: 163 HTDKAASTILKLQPELTGFGVTLARLRLLSPNLLDLSE 200 TDKAA+TILKL+ ELTGFG TL L +SPNLL+L+E Sbjct: 187 GTDKAAATILKLEKELTGFGTTLQILNGISPNLLELTE 224 >ref|YP_001100982.1| twitching motility transmembrane protein [Herminiimonas arsenicoxydans] emb|CAL62861.1| Putative twitching motility transmembrane protein PilJ-like [Herminiimonas arsenicoxydans] Length = 757 Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 97/221 (43%), Positives = 128/221 (57%), Gaps = 21/221 (9%) Query: 1 MAFKLPHISKNKTGGPAG------------TRASQPSVIGAKAD---------KYMERYQ 39 MAFKLP K G T A ++ A+A+ +++ Sbjct: 1 MAFKLPLSKSKKEAAAQGADTYGDMAADTTTPADAKTLRAARANINPNATYIGDVLQKSG 60 Query: 40 HTRLPFIGRQSLRAQTRILLLLLILALLSMFFFLWLGSKHYIHASLQAHITSDLVMHSQR 99 RLP IG+ L+ Q RILL+ L +L+ F+WL +++ S Q I D +MHSQR Sbjct: 61 DIRLPLIGKLPLQQQVRILLIALGSSLVLGAAFVWLNAEYSALTSTQTQIAGDALMHSQR 120 Query: 100 IGKAVPNAIQGNREAFNQLTESRKEFNQGLNVLMLGGEYQGYAIRKPEPEMRAVLVDVQK 159 +GKA PNAIQGN+EAF QL +SRKEFN L +L GG YQG I P+ +M L +VQK Sbjct: 121 VGKATPNAIQGNKEAFKQLADSRKEFNNDLAILSKGGVYQGRDISAPDAKMEVALQEVQK 180 Query: 160 IWDHTDKAASTILKLQPELTGFGVTLARLRLLSPNLLDLSE 200 +W +DKAA+TILKL+ LTGFG TL L +SPNLL+L+E Sbjct: 181 LWAGSDKAAATILKLEGPLTGFGKTLEVLNGISPNLLELTE 221 >ref|YP_004751453.1| twitching motility protein [Collimonas fungivorans Ter331] gb|AEK60630.1| twitching motility protein [Collimonas fungivorans Ter331] Length = 815 Score = 172 bits (435), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 92/158 (58%), Positives = 111/158 (70%) Query: 43 LPFIGRQSLRAQTRILLLLLILALLSMFFFLWLGSKHYIHASLQAHITSDLVMHSQRIGK 102 LP IGR + Q R+L+ +L+ ALL FLWL +K +S Q I D +MHSQRIGK Sbjct: 122 LPLIGRLPQQKQIRLLVTVLVGALLLTILFLWLSAKSSAMSSTQTQIAGDALMHSQRIGK 181 Query: 103 AVPNAIQGNREAFNQLTESRKEFNQGLNVLMLGGEYQGYAIRKPEPEMRAVLVDVQKIWD 162 A PNAIQGN EAF QL +SRKEFNQ L++L GG+Y+G+ I P M + L DV K+W Sbjct: 182 ATPNAIQGNPEAFKQLADSRKEFNQDLSILSKGGDYKGHDIGTPTATMDSKLADVSKVWS 241 Query: 163 HTDKAASTILKLQPELTGFGVTLARLRLLSPNLLDLSE 200 +TDKAA TILKLQ ELT FGVTL +L +SPNLLDLSE Sbjct: 242 NTDKAADTILKLQKELTSFGVTLQKLNGISPNLLDLSE 279 >ref|ZP_08274269.1| twitching motility protein PilJ [Oxalobacteraceae bacterium IMCC9480] gb|EGF32260.1| twitching motility protein PilJ [Oxalobacteraceae bacterium IMCC9480] Length = 675 Score = 144 bits (364), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 70/136 (51%), Positives = 92/136 (67%) Query: 65 ALLSMFFFLWLGSKHYIHASLQAHITSDLVMHSQRIGKAVPNAIQGNREAFNQLTESRKE 124 AL ++ F++L + S Q I D +MH+QR+GKA PNAIQGN +AF QL ESRKE Sbjct: 4 ALAAVGIFVFLNVSYSTQTSTQTQIAGDALMHTQRVGKAAPNAIQGNVQAFGQLDESRKE 63 Query: 125 FNQGLNVLMLGGEYQGYAIRKPEPEMRAVLVDVQKIWDHTDKAASTILKLQPELTGFGVT 184 FN L+VL GG +QG I P+ M L ++W +TDKAA+TILKL+ EL+GFG T Sbjct: 64 FNHDLDVLRNGGTFQGRNILAPDASMVPALEQTGQLWANTDKAAATILKLRKELSGFGAT 123 Query: 185 LARLRLLSPNLLDLSE 200 L +L +LSP LL+L+E Sbjct: 124 LKQLNVLSPGLLELTE 139