BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0035.p         (112 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001100982.1| twitching motility transmembrane protein [He...   143   7e-33
ref|YP_001354643.1| PilJ twitching motility protein [Janthinobac...   143   7e-33
ref|ZP_08274269.1| twitching motility protein PilJ [Oxalobactera...   141   4e-32
ref|YP_003777226.1| twitching motility transmembrane protein [He...   139   2e-31
ref|YP_004751453.1| twitching motility protein [Collimonas fungi...   137   4e-31

>ref|YP_001100982.1| twitching motility transmembrane protein [Herminiimonas
           arsenicoxydans]
 emb|CAL62861.1| Putative twitching motility transmembrane protein PilJ-like
           [Herminiimonas arsenicoxydans]
          Length = 757

 Score =  143 bits (361), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 77/109 (70%), Positives = 86/109 (78%)

Query: 2   IQADTHDAVAAMEKSTAGVVDGAKLSDAAGASLSDIRRVSNQLAELIQDISSSTGHQATS 61
           IQ DTHDAVAAMEKST GVV+GAKLSDAAGA+LSDIRRVSN+LAELIQ ISS+T  QATS
Sbjct: 648 IQTDTHDAVAAMEKSTQGVVEGAKLSDAAGAALSDIRRVSNRLAELIQGISSATEQQATS 707

Query: 62  ANSVAHDIQNILSENEIIEQRREQVLFLFNELHDLAELLKNSVSRFRVT 110
           AN VA +IQ IL+  E  ++  +Q      EL  LAE LKNSVSRFRVT
Sbjct: 708 ANGVAQNIQGILTVTEQTQEGTQQTAHSIRELSKLAEELKNSVSRFRVT 756


>ref|YP_001354643.1| PilJ twitching motility protein [Janthinobacterium sp. Marseille]
 gb|ABR90003.1| PilJ twitching motility protein [Janthinobacterium sp. Marseille]
          Length = 760

 Score =  143 bits (361), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 77/109 (70%), Positives = 86/109 (78%)

Query: 2   IQADTHDAVAAMEKSTAGVVDGAKLSDAAGASLSDIRRVSNQLAELIQDISSSTGHQATS 61
           IQ DTHDAVAAMEKST GVV+GAKLSDAAGA+LSDIRRVSN+LAELIQ ISS+T  QATS
Sbjct: 651 IQTDTHDAVAAMEKSTQGVVEGAKLSDAAGAALSDIRRVSNRLAELIQGISSATEQQATS 710

Query: 62  ANSVAHDIQNILSENEIIEQRREQVLFLFNELHDLAELLKNSVSRFRVT 110
           AN VA +IQ IL+  E  ++  +Q      EL  LAE LKNSVSRFRVT
Sbjct: 711 ANGVAQNIQGILTVTEQTQEGTQQTAHSIRELSKLAEELKNSVSRFRVT 759


>ref|ZP_08274269.1| twitching motility protein PilJ [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF32260.1| twitching motility protein PilJ [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 675

 Score =  141 bits (355), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 78/109 (71%), Positives = 85/109 (77%)

Query: 2   IQADTHDAVAAMEKSTAGVVDGAKLSDAAGASLSDIRRVSNQLAELIQDISSSTGHQATS 61
           IQ DTHDAVAAMEKST GVV+GA+LSDAAGA+LSDIRRVSN+LAELIQ IS ST  QATS
Sbjct: 566 IQTDTHDAVAAMEKSTQGVVEGARLSDAAGAALSDIRRVSNRLAELIQGISLSTEQQATS 625

Query: 62  ANSVAHDIQNILSENEIIEQRREQVLFLFNELHDLAELLKNSVSRFRVT 110
           AN VA +IQNILS  E  +   +Q      EL  LAE LKNSVSRFRVT
Sbjct: 626 ANGVAQNIQNILSVTEQTQHGTQQTASSIRELARLAEELKNSVSRFRVT 674


>ref|YP_003777226.1| twitching motility transmembrane protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ65318.1| twitching motility transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 753

 Score =  139 bits (349), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 73/112 (65%), Positives = 86/112 (76%)

Query: 1   MIQADTHDAVAAMEKSTAGVVDGAKLSDAAGASLSDIRRVSNQLAELIQDISSSTGHQAT 60
           MIQADT D V AM+KST GV +GA LSDAAG++L+DIR VS +LAELIQ ++ ST  QA 
Sbjct: 642 MIQADTRDVVVAMDKSTTGVTEGAVLSDAAGSALADIRSVSEKLAELIQGMAGSTREQAV 701

Query: 61  SANSVAHDIQNILSENEIIEQRREQVLFLFNELHDLAELLKNSVSRFRVTIS 112
           SAN VA  IQ IL+EN+IIEQ REQV  L+ EL   A  L+NSVSRFRVT+S
Sbjct: 702 SANGVAQQIQGILTENDIIEQSREQVSALYEELWAAARQLENSVSRFRVTVS 753


>ref|YP_004751453.1| twitching motility protein [Collimonas fungivorans Ter331]
 gb|AEK60630.1| twitching motility protein [Collimonas fungivorans Ter331]
          Length = 815

 Score =  137 bits (346), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 75/109 (68%), Positives = 83/109 (76%)

Query: 2   IQADTHDAVAAMEKSTAGVVDGAKLSDAAGASLSDIRRVSNQLAELIQDISSSTGHQATS 61
           IQ DTHDAV AME+ST GVV+GAKLSDAAGA+LSDIRRVSN+LAELIQ ISS+T  QA S
Sbjct: 706 IQTDTHDAVVAMERSTQGVVEGAKLSDAAGAALSDIRRVSNRLAELIQSISSTTEQQANS 765

Query: 62  ANSVAHDIQNILSENEIIEQRREQVLFLFNELHDLAELLKNSVSRFRVT 110
           AN VA +IQNILS  E   +   Q      EL  LAE LK+SVSRFRVT
Sbjct: 766 ANGVATNIQNILSVTEKTREGTRQTALSIRELSKLAEDLKSSVSRFRVT 814