BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0023.0034.p (463 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004751454.1| chemotaxis protein [Collimonas fungivorans T... 109 1e-21 ref|YP_001100981.1| putative composite two component regulatory ... 102 2e-19 ref|ZP_08273851.1| putative composite two component regulatory (... 98 3e-18 ref|ZP_08506213.1| Putative pilus biogenese protein [Methylovers... 97 6e-18 ref|YP_001354642.1| two-component hybrid sensor and regulator [J... 92 2e-16 >ref|YP_004751454.1| chemotaxis protein [Collimonas fungivorans Ter331] gb|AEK60631.1| Chemotaxis protein [Collimonas fungivorans Ter331] Length = 1958 Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 55/119 (46%), Positives = 75/119 (63%), Gaps = 2/119 (1%) Query: 280 DEIDADLREVFLLEANEVLDNIRHAL--AASHATPDDMAQVVVLRRSFHTLKGSGRMVGL 337 +E DA+LRE+FL EA+EVL N R L H P + VLRR+FHTLKGSGRM+GL Sbjct: 725 EEADAELREIFLSEADEVLTNARLTLPQLQQHDAPHKQEPLTVLRRAFHTLKGSGRMIGL 784 Query: 338 NALGRGAMALEEFATAWSAAGRSGTTGDYALLDYTVAELSAWIDEISANGNSPRSPDRL 396 NA G A ++E+ W + R+ + ALLD+ V +L W+ EI +G+S ++PD L Sbjct: 785 NAFGEAAWSVEQVLNLWLSESRAVSADLNALLDHAVTQLDGWVKEIQQHGHSQQTPDAL 843 >ref|YP_001100981.1| putative composite two component regulatory (sensor histidine kinase and response regulator hybrid) transcription regulator protein [Herminiimonas arsenicoxydans] emb|CAL62860.1| Putative chemotaxis protein histidine kinase [Herminiimonas arsenicoxydans] Length = 1969 Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/160 (40%), Positives = 87/160 (54%), Gaps = 3/160 (1%) Query: 246 NIAAAPDMAAPMAPPDAP-KTEPAVQP--PQLAPQQPDEIDADLREVFLLEANEVLDNIR 302 + A+PD +A AP K V+ P +AP + IDA+L E+FL EA EVLD ++ Sbjct: 677 DFVASPDAMEDIALATAPAKVVSQVKEIAPLVAPASDEAIDAELLEIFLSEAVEVLDCVK 736 Query: 303 HALAASHATPDDMAQVVVLRRSFHTLKGSGRMVGLNALGRGAMALEEFATAWSAAGRSGT 362 + S P + + LRRSFHTLKGSGRMVGL ALG A ++E+ + R G Sbjct: 737 QTIPDSRNAPHNQEFLTTLRRSFHTLKGSGRMVGLIALGEAAWSVEQVLNLRLSETRGGD 796 Query: 363 TGDYALLDYTVAELSAWIDEISANGNSPRSPDRLLAAVAG 402 YALL+ V L AW+ ++ G S RS L+ A G Sbjct: 797 PELYALLENAVQVLDAWVSDLQTQGRSDRSGRALINAAEG 836 >ref|ZP_08273851.1| putative composite two component regulatory (sensor histidine kinase and response regulator hybrid) transcription regulator protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF32687.1| putative composite two component regulatory (sensor histidine kinase and response regulator hybrid) transcription regulator protein [Oxalobacteraceae bacterium IMCC9480] Length = 1331 Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 59/142 (41%), Positives = 80/142 (56%), Gaps = 4/142 (2%) Query: 269 VQPPQLAPQQPDEIDADLREVFLLEANEVLDNIRHALAASHATPDDMAQVVVLRRSFHTL 328 V P APQ +DA+L ++FL EA EVL+++R L HA P D Q+ LRR FHTL Sbjct: 230 VAPVMPAPQTEAAVDAELLDIFLGEAEEVLESVRTTLPQLHANPQDNFQLASLRRGFHTL 289 Query: 329 KGSGRMVGLNALGRGAMALEEFATAWSAAGRSGTTGDYALLDYTVAELSAWIDEISANGN 388 KGSGRMVGL+ALG A ++E+ A + T AL+ L+AW+ E+ A+G Sbjct: 290 KGSGRMVGLDALGNAAWSIEQVLNRQVADEKGATPDVLALIGQAEQLLTAWVGELRADGY 349 Query: 389 SPRSPDRLLAA----VAGXPMP 406 R L+ A + G P+P Sbjct: 350 CARDGVALIDAAQCLLDGVPLP 371 >ref|ZP_08506213.1| Putative pilus biogenese protein [Methyloversatilis universalis FAM5] gb|EGK70392.1| Putative pilus biogenese protein [Methyloversatilis universalis FAM5] Length = 2056 Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 56/147 (38%), Positives = 77/147 (52%), Gaps = 1/147 (0%) Query: 252 DMAAPMAPPDAPKTEPAVQPPQLAPQQPDEIDADLREVFLLEANEVLDNIRHALAASHAT 311 D +A P A P+ +LA +E DA+L E+F+ EA EVLD I ++ Sbjct: 646 DAVQALAEPPADSLAPSADTVRLAEASQEEFDAELLEIFIEEAREVLDTIAAGTVSARQA 705 Query: 312 PDDMAQVVVLRRSFHTLKGSGRMVGLNALGRGAMALEEFATAWSAAGRSGTTGDYALLDY 371 P + LRR FHTLKGSGRMVGL LG A A+E+ W A+ R GT + L+D Sbjct: 706 PHSQDLLTTLRRGFHTLKGSGRMVGLRDLGEAAYAVEQVMNRWLASERDGTPELFDLIDR 765 Query: 372 TVAELSAWIDEISANGNSPRSPDRLLA 398 + W+D ++ +GN+ P LA Sbjct: 766 ARGLFAGWVDMLT-DGNTQTPPHDWLA 791 >ref|YP_001354642.1| two-component hybrid sensor and regulator [Janthinobacterium sp. Marseille] gb|ABR89484.1| two-component hybrid sensor and regulator [Janthinobacterium sp. Marseille] Length = 1901 Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/122 (40%), Positives = 67/122 (54%) Query: 270 QPPQLAPQQPDEIDADLREVFLLEANEVLDNIRHALAASHATPDDMAQVVVLRRSFHTLK 329 + P+ P + IDA+L E+FL EA EVLD ++ S P + + LRRSFHTLK Sbjct: 663 ETPRATPVSDEAIDAELLEIFLSEAVEVLDCVKQTTPESRNAPHNQEYLTTLRRSFHTLK 722 Query: 330 GSGRMVGLNALGRGAMALEEFATAWSAAGRSGTTGDYALLDYTVAELSAWIDEISANGNS 389 GSGRMVGL A G A ++E+ + R G YALL+ L AW+ ++ G S Sbjct: 723 GSGRMVGLLAFGETAWSVEQVLNLRLSETRGGDPDLYALLENATQVLDAWVHDLQTQGRS 782 Query: 390 PR 391 R Sbjct: 783 DR 784