BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0023.0028.p (300 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777223.1| LysR family transcription regulator protein ... 408 e-112 ref|YP_004022152.1| LysR family transcriptional regulator [Burkh... 293 2e-77 ref|YP_001346724.1| putative transcriptional regulator [Pseudomo... 289 4e-76 ref|YP_584087.1| transcriptional regulator, lysR family [Cupriav... 277 1e-72 ref|YP_004700512.1| LysR family transcriptional regulator [Pseud... 275 9e-72 >ref|YP_003777223.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65315.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 307 Score = 408 bits (1048), Expect = e-112, Method: Compositional matrix adjust. Identities = 206/305 (67%), Positives = 248/305 (81%), Gaps = 6/305 (1%) Query: 1 MISIKQLKYFVEIVAAGSYTRASERLYIAQSALSRQIKELENDIDVVLLRRDAKQVELTL 60 MISI+QL+YFVEIV A YTRA+ERL++AQSALSRQIKELE D+DVVLLRR+AK ELT Sbjct: 1 MISIRQLRYFVEIVEARGYTRAAERLFVAQSALSRQIKELEADLDVVLLRREAKTFELTQ 60 Query: 61 AGKDFYDRARKILDDMDQAIVQAHHIDKGERGAIRLLHSSSVPLSPPLGPCLNAVLQAFP 120 AG+DFY+R+RKIL D+D+A+ QA I KGE GA+RLLHSSSVPL+ PLGP LN L+AFP Sbjct: 61 AGQDFYERSRKILLDLDRAVAQARTIGKGEHGALRLLHSSSVPLTAPLGPMLNEALKAFP 120 Query: 121 GVTLEISQASSEHQALDVEEGRADLGLARTPILRKHPHLETITLYQEKLVVAVSLQHPLA 180 G++LEISQA SE+QA ++ EG AD+GLAR PILR +P+L + LY+E+LV AV H LA Sbjct: 121 GISLEISQAPSEYQAREIVEGSADIGLARLPILRANPNLASTVLYRERLVAAVPAGHRLA 180 Query: 181 QREVVGIAELRDELFVSMPHRERGGLSYLVAERCIAHGFFPRPARATSRKASLLSLVNAD 240 QR+ V IAELRDE FV++PHR+RGGLSYLVAERCIAHGF+PR ARATSRK SLLSLVNA Sbjct: 181 QRQEVEIAELRDEFFVTVPHRDRGGLSYLVAERCIAHGFYPRVARATSRKNSLLSLVNAG 240 Query: 241 FGIAIVPDSMRAIAV-AGVHFIDIREPDFQSAVVLMMRRDAPVMVGQFVQAFM-----QG 294 FGIA+VP SM + ++ AGV F +++PDF S V L+ RRDAP MVGQFV+AF+ G Sbjct: 241 FGIAVVPQSMASTSLAAGVSFPALKDPDFHSEVALLRRRDAPAMVGQFVEAFVARLHEAG 300 Query: 295 LQMPA 299 L PA Sbjct: 301 LSAPA 305 >ref|YP_004022152.1| LysR family transcriptional regulator [Burkholderia rhizoxinica HKI 454] emb|CBW76633.1| Transcriptional regulators, LysR family [Burkholderia rhizoxinica HKI 454] Length = 306 Score = 293 bits (750), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 151/292 (51%), Positives = 204/292 (69%) Query: 1 MISIKQLKYFVEIVAAGSYTRASERLYIAQSALSRQIKELENDIDVVLLRRDAKQVELTL 60 M+S++QL+YFVEIV AGSY+ A+ERL+IAQSALSRQIKELE V LL R A++VELT Sbjct: 12 MMSLRQLRYFVEIVEAGSYSLAAERLFIAQSALSRQIKELEATAQVQLLVRGARRVELTR 71 Query: 61 AGKDFYDRARKILDDMDQAIVQAHHIDKGERGAIRLLHSSSVPLSPPLGPCLNAVLQAFP 120 AGK YD A+++L ++++ +VQ H ++GE+G IRL+HSSSVP + PL + L A Sbjct: 72 AGKALYDGAKRLLFNLNETLVQTRHANRGEQGIIRLVHSSSVPFAGPLLERVRCYLDANE 131 Query: 121 GVTLEISQASSEHQALDVEEGRADLGLARTPILRKHPHLETITLYQEKLVVAVSLQHPLA 180 V+ ++SQ SE Q +E+G D+G R P+ ++P + LY E L++AVS HPLA Sbjct: 132 HVSAQVSQMPSEEQMASIEQGVNDVGFVRLPVHLEYPGVRADELYSEPLMLAVSATHPLA 191 Query: 181 QREVVGIAELRDELFVSMPHRERGGLSYLVAERCIAHGFFPRPARATSRKASLLSLVNAD 240 RE V IAELR+E FVS+PH ERGGLS+ VAE C+ +G+FPR AR TSRK + LSL+ A Sbjct: 192 GREAVSIAELREEPFVSLPHHERGGLSFRVAELCMKNGYFPRSARVTSRKTTQLSLIEAG 251 Query: 241 FGIAIVPDSMRAIAVAGVHFIDIREPDFQSAVVLMMRRDAPVMVGQFVQAFM 292 FG+++V +SMR IA AGV FI + +AV ++ R +A +V FV A M Sbjct: 252 FGVSLVAESMRLIAPAGVRFIRLAGTGNTTAVAMLYRSNASALVQAFVAATM 303 >ref|YP_001346724.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gb|ABR85626.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 302 Score = 289 bits (739), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 154/296 (52%), Positives = 202/296 (68%), Gaps = 1/296 (0%) Query: 1 MISIKQLKYFVEIVAAGSYTRASERLYIAQSALSRQIKELENDIDVVLLRRDAKQVELTL 60 MIS++QL YFVEIV +G ++RA+ERL++AQSALSRQ++ELE+ I LLRR +QVELT Sbjct: 1 MISLRQLHYFVEIVESGGFSRAAERLFVAQSALSRQVRELEDSIGTPLLRRGPRQVELTP 60 Query: 61 AGKDFYDRARKILDDMDQAIVQAHHIDKGERGAIRLLHSSSVPLSPPLGPCLNAVLQAFP 120 AG+ F RA+++L D++ A A + +G G +RL HSSSVPL L L L A Sbjct: 61 AGRAFLPRAQRLLGDLEAARRLAREVGEGGHGLLRLGHSSSVPLVDGLQAALRGYLAAQS 120 Query: 121 GVTLEISQASSEHQALDVEEGRADLGLARTPILRKHPHLETITLYQEKLVVAVSLQHPLA 180 GV LE++Q SSE Q D+ EGR D+GL R P+LR+HP L LY+E L++A++ HPLA Sbjct: 121 GVRLELTQQSSEQQLADLAEGRLDVGLLRLPVLRQHPRLHLRALYREPLLLALAADHPLA 180 Query: 181 QREV-VGIAELRDELFVSMPHRERGGLSYLVAERCIAHGFFPRPARATSRKASLLSLVNA 239 +RE V +A L E FVS+PH +RGGLSY AE C+ GF+PRPARA SRK S L L+ A Sbjct: 181 RRETPVALAALAGETFVSIPHLQRGGLSYRAAELCLGAGFYPRPARALSRKTSQLQLIEA 240 Query: 240 DFGIAIVPDSMRAIAVAGVHFIDIREPDFQSAVVLMMRRDAPVMVGQFVQAFMQGL 295 FG+A+VP SMRAIA V F+ + E + S V L RRD +V FV+ F++ L Sbjct: 241 GFGVALVPASMRAIAPPAVRFLPLAEAEAYSEVALAWRRDDSPLVEGFVEYFLENL 296 >ref|YP_584087.1| transcriptional regulator, lysR family [Cupriavidus metallidurans CH34] gb|ABF08818.1| transcriptional regulator, lysR family [Cupriavidus metallidurans CH34] Length = 312 Score = 277 bits (709), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 144/279 (51%), Positives = 196/279 (70%) Query: 3 SIKQLKYFVEIVAAGSYTRASERLYIAQSALSRQIKELENDIDVVLLRRDAKQVELTLAG 62 S+KQL+YFVEIV AG+++ A+ERL+IAQSALSRQI+++E + V LL R + VE T AG Sbjct: 18 SLKQLRYFVEIVDAGNFSLAAERLFIAQSALSRQIRDMEATLQVELLVRKPRHVEPTAAG 77 Query: 63 KDFYDRARKILDDMDQAIVQAHHIDKGERGAIRLLHSSSVPLSPPLGPCLNAVLQAFPGV 122 + FY+ AR+IL D+ A VQA + +G AIRLLHSSSV L+P L+ P Sbjct: 78 QAFYESARRILSDLAGAAVQARQVQRGGADAIRLLHSSSVVLTPQRCGWLHRWQSDHPAA 137 Query: 123 TLEISQASSEHQALDVEEGRADLGLARTPILRKHPHLETITLYQEKLVVAVSLQHPLAQR 182 E++QASSE Q++D+EEGRADLGLAR P+LR++P+++ + E+LVVAV HP+++R Sbjct: 138 RFEVAQASSEQQSVDIEEGRADLGLARDPVLRRYPNIQIDPMAGERLVVAVCADHPMSRR 197 Query: 183 EVVGIAELRDELFVSMPHRERGGLSYLVAERCIAHGFFPRPARATSRKASLLSLVNADFG 242 E + ++ LR+ FVS+PH ERGGLSY VA+ C A GF+P A A SRK S LSLV A FG Sbjct: 198 ESLTLSALREMPFVSLPHPERGGLSYRVAQLCQASGFYPTAAGAISRKLSQLSLVAAGFG 257 Query: 243 IAIVPDSMRAIAVAGVHFIDIREPDFQSAVVLMMRRDAP 281 +A+VP+SM+ GV + + + + VVL+ RRDAP Sbjct: 258 VAVVPESMQWFGPDGVRLVPLSDAGATTRVVLLSRRDAP 296 >ref|YP_004700512.1| LysR family transcriptional regulator [Pseudomonas putida S16] gb|AEJ11632.1| LysR family transcriptional regulator [Pseudomonas putida S16] Length = 292 Score = 275 bits (702), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 147/291 (50%), Positives = 195/291 (67%), Gaps = 1/291 (0%) Query: 1 MISIKQLKYFVEIVAAGSYTRASERLYIAQSALSRQIKELENDIDVVLLRRDAKQVELTL 60 M SI+QL+YFVEI GS++ A+ERLYIAQSALSRQIKELE + L R A+ LTL Sbjct: 1 MTSIRQLRYFVEIAECGSFSAAAERLYIAQSALSRQIKELEQQLGTPLFERTARLPRLTL 60 Query: 61 AGKDFYDRARKILDDMDQAIVQAHHIDKGERGAIRLLHSSSVPLSPPLGPCLNAVLQAFP 120 AG+ F +RAR++L D+ QA I +G +G++RL HSS+VPL+ PL L L+ P Sbjct: 61 AGQAFLERARRLLADLAQAERVTRDIGEGLQGSLRLNHSSTVPLTGPLLARLGGYLRDNP 120 Query: 121 GVTLEISQASSEHQALDVEEGRADLGLARTPILRKHPHLETITLYQEKLVVAVSLQHPLA 180 GV+LEI+Q SSE Q D+ GR D+GL R P+LR+H + L+ E L++AV+ HPLA Sbjct: 121 GVSLEIAQQSSEAQLEDIAAGRLDIGLLRLPVLRQHEGVVLHELFSEPLLLAVAAAHPLA 180 Query: 181 QREVVGIAELRDELFVSMPHRERGGLSYLVAERCIAHGFFPRPARATSRKASLLSLVNAD 240 V + +LR+E F+S+PHR+RGGLSYL A C+ GFFPR A+ SRK + L L+ A Sbjct: 181 SAPQVKLEQLREERFISIPHRDRGGLSYLSASMCMEAGFFPRAAQVLSRKTTQLQLIQAG 240 Query: 241 FGIAIVPDSMRAIAVAGVHFIDIREPDFQSAVVLMMRRDAPVMVGQFVQAF 291 FG+A++P+ MR IA A V F+ + E +S V + RRDA MV QFV A Sbjct: 241 FGVALLPECMREIAPASVSFVAL-EGGCESTVAMACRRDAGSMVRQFVTAM 290