BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0023.0022.p (450 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001352021.1| 1-deoxy-D-xylulose-5-phosphate synthase [Jan... 766 0.0 ref|YP_003777217.1| 1-deoxy-D-xylulose-5-phosphate synthase [Her... 760 0.0 ref|YP_004751391.1| 1-deoxy-D-xylulose 5-phosphate synthase [Col... 759 0.0 ref|ZP_08274827.1| 1-deoxy-D-xylulose 5-phosphate synthase [Oxal... 750 0.0 ref|YP_001098635.1| 1-deoxy-D-xylulose-5-phosphate synthase [Her... 738 0.0 >ref|YP_001352021.1| 1-deoxy-D-xylulose-5-phosphate synthase [Janthinobacterium sp. Marseille] gb|ABR88277.1| 1-deoxy-D-xylulose-5-phosphate synthase [Janthinobacterium sp. Marseille] Length = 621 Score = 766 bits (1977), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/418 (88%), Positives = 388/418 (92%), Gaps = 2/418 (0%) Query: 1 MLNTINSPADLRQLPRTQLKPLADELRAFILDSVSKTGGHLSSNLGTVELTIALHYVFNT 60 +L TIN PAD+RQL R QLK LADELRAF+L+SVS TGGHLSSNLGTVELTIALH VFNT Sbjct: 3 LLETINDPADVRQLTRPQLKQLADELRAFVLESVSATGGHLSSNLGTVELTIALHNVFNT 62 Query: 61 PEDRIVWDVGHQTYPHKILTGRRDQMSTLRQLDGISGFPRRAESEHDTFGTAHSSTSISA 120 PEDRI+WDVGHQTYPHKILTGRRDQM +LRQ+DGISGFPRR ES +DTFGTAHSSTSISA Sbjct: 63 PEDRIIWDVGHQTYPHKILTGRRDQMHSLRQIDGISGFPRRDESPYDTFGTAHSSTSISA 122 Query: 121 ALGMALAAKTKGEDRHAIAVXLAADGAMTAGMAFEAMNNAGISEDVNLLVILNDNDMSIS 180 ALGMALAAKTKGEDRHAIAV DGAMTAGMAFEAMNNAGI +D+NLLV+LNDNDMSIS Sbjct: 123 ALGMALAAKTKGEDRHAIAVI--GDGAMTAGMAFEAMNNAGIHDDINLLVVLNDNDMSIS 180 Query: 181 PPVGALNRYLARLMSGQFYAKAKNVGKSMLPGPMLELAKRFEEHAKGMIVPATMFEEFGF 240 PPVGALNRYLARLMSGQFYA AKNVGK++LP PM ELAKRFEEHAKGMIVPATMFEEFGF Sbjct: 181 PPVGALNRYLARLMSGQFYAAAKNVGKTVLPAPMRELAKRFEEHAKGMIVPATMFEEFGF 240 Query: 241 NYIGPIDGHDLDSLIPTLQNLKNLKGPQFLHVVTRKGQGYKLAEADPVLYHGPGKFNPAE 300 NYIGPIDGHDLDSLIPTLQNLKNLKGPQFLHVVTRKGQGYKLAEADPVLYHGPGKF+PAE Sbjct: 241 NYIGPIDGHDLDSLIPTLQNLKNLKGPQFLHVVTRKGQGYKLAEADPVLYHGPGKFDPAE 300 Query: 301 GIKPAAASKQTYTQVFGEWLCDMAAQDKTLVGITPAMREGSGMVSFEQKFPDRYYDVGIA 360 GIKP+ A K TYT VFG+WLCDMAA DK LVGITPAMREGSGMV FE++FPDRYYDVGIA Sbjct: 301 GIKPSTAKKVTYTSVFGDWLCDMAAADKRLVGITPAMREGSGMVEFERRFPDRYYDVGIA 360 Query: 361 EQHAVTFAAGMACEGMKPVVAIYSTFLQRAYDQLIHDVALQNLDVTFALDRAGXQNLD 418 EQHAVTFAAGMACEG+KPVVAIYSTFLQR YDQLIHDVALQNLDVTFALDR+G D Sbjct: 361 EQHAVTFAAGMACEGLKPVVAIYSTFLQRGYDQLIHDVALQNLDVTFALDRSGLVGAD 418 >ref|YP_003777217.1| 1-deoxy-D-xylulose-5-phosphate synthase [Herbaspirillum seropedicae SmR1] gb|ADJ65309.1| 1-deoxy-D-xylulose 5-phosphate synthase protein [Herbaspirillum seropedicae SmR1] Length = 621 Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/418 (86%), Positives = 392/418 (93%), Gaps = 2/418 (0%) Query: 1 MLNTINSPADLRQLPRTQLKPLADELRAFILDSVSKTGGHLSSNLGTVELTIALHYVFNT 60 +LNTIN PADLR+L R QLKPLA+ELR F+LDSVSKTGGHLSSNLGTVELTIALHYVFNT Sbjct: 2 LLNTINDPADLRRLSRHQLKPLAEELRGFLLDSVSKTGGHLSSNLGTVELTIALHYVFNT 61 Query: 61 PEDRIVWDVGHQTYPHKILTGRRDQMSTLRQLDGISGFPRRAESEHDTFGTAHSSTSISA 120 PEDR+VWDVGHQTYPHKILTGRR++M TLRQ +GISGFPRR ES++DTFGTAHSSTSISA Sbjct: 62 PEDRVVWDVGHQTYPHKILTGRRERMDTLRQQEGISGFPRRIESQYDTFGTAHSSTSISA 121 Query: 121 ALGMALAAKTKGEDRHAIAVXLAADGAMTAGMAFEAMNNAGISEDVNLLVILNDNDMSIS 180 ALGMALAA+T+G DRHAIAV DGAMTAGMAFEA+NNAG+ EDV LLVILNDNDMSIS Sbjct: 122 ALGMALAARTQGSDRHAIAVI--GDGAMTAGMAFEALNNAGVHEDVKLLVILNDNDMSIS 179 Query: 181 PPVGALNRYLARLMSGQFYAKAKNVGKSMLPGPMLELAKRFEEHAKGMIVPATMFEEFGF 240 PPVGALNRYLARLMSG+FYA+A++VGKS+LPGP+LELAKR EEHAKGM+VPATMFEEFGF Sbjct: 180 PPVGALNRYLARLMSGKFYARARDVGKSVLPGPVLELAKRLEEHAKGMVVPATMFEEFGF 239 Query: 241 NYIGPIDGHDLDSLIPTLQNLKNLKGPQFLHVVTRKGQGYKLAEADPVLYHGPGKFNPAE 300 NYIGPIDGHDLDSL+PTLQNLK+LKGPQFLHVVT+KGQGYKLAEADPVLYHGPGKFNP+E Sbjct: 240 NYIGPIDGHDLDSLVPTLQNLKHLKGPQFLHVVTKKGQGYKLAEADPVLYHGPGKFNPSE 299 Query: 301 GIKPAAASKQTYTQVFGEWLCDMAAQDKTLVGITPAMREGSGMVSFEQKFPDRYYDVGIA 360 GIKP+A K TYT+VFG+WLCDMAA D LVGITPAMREGSGMV FE+KFP+RYYDVGIA Sbjct: 300 GIKPSAGGKLTYTKVFGDWLCDMAAADDKLVGITPAMREGSGMVDFEKKFPNRYYDVGIA 359 Query: 361 EQHAVTFAAGMACEGMKPVVAIYSTFLQRAYDQLIHDVALQNLDVTFALDRAGXQNLD 418 EQHAVTFAAGMACEGMKPVVAIYSTFLQRAYDQLIHDVALQNLDVTFALDRAG D Sbjct: 360 EQHAVTFAAGMACEGMKPVVAIYSTFLQRAYDQLIHDVALQNLDVTFALDRAGLVGAD 417 >ref|YP_004751391.1| 1-deoxy-D-xylulose 5-phosphate synthase [Collimonas fungivorans Ter331] gb|AEK60568.1| 1-deoxy-D-xylulose 5-phosphate synthase [Collimonas fungivorans Ter331] Length = 623 Score = 759 bits (1961), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/419 (86%), Positives = 392/419 (93%), Gaps = 3/419 (0%) Query: 1 MLNTINSPADLRQLPRTQLKPLADELRAFILDSVSKTGGHLSSNLGTVELTIALHYVFNT 60 +LNTI+SPADLR+L R QL+PLADELR F+++SV++TGGHLSSNLGTVELTIALHYVFNT Sbjct: 3 LLNTIDSPADLRKLTRAQLRPLADELREFVIESVAQTGGHLSSNLGTVELTIALHYVFNT 62 Query: 61 PEDRIVWDVGHQTYPHKILTGRRDQMSTLRQLDGISGFPRRAESEHDTFGTAHSSTSISA 120 PEDR+VWDVGHQTYPHKILTGRRD+M TLRQLDGISGFPRRAESE+DTFGTAHSSTSISA Sbjct: 63 PEDRVVWDVGHQTYPHKILTGRRDRMHTLRQLDGISGFPRRAESEYDTFGTAHSSTSISA 122 Query: 121 ALGMALAAKTKGE-DRHAIAVXLAADGAMTAGMAFEAMNNAGISEDVNLLVILNDNDMSI 179 LGMALAAKTKGE DRHAIAV DGAMTAGM FEAMNNAG+ +D+N+LVILNDNDMSI Sbjct: 123 VLGMALAAKTKGETDRHAIAVI--GDGAMTAGMVFEAMNNAGVYDDINMLVILNDNDMSI 180 Query: 180 SPPVGALNRYLARLMSGQFYAKAKNVGKSMLPGPMLELAKRFEEHAKGMIVPATMFEEFG 239 SPPVGALNRYLARLMSGQFYA+AKNVGKS+LPGPM +LAKRFEEHAKGM+VPATMFEEFG Sbjct: 181 SPPVGALNRYLARLMSGQFYAQAKNVGKSILPGPMRQLAKRFEEHAKGMVVPATMFEEFG 240 Query: 240 FNYIGPIDGHDLDSLIPTLQNLKNLKGPQFLHVVTRKGQGYKLAEADPVLYHGPGKFNPA 299 FNYIGPIDGHDL+SLIPTLQNLKNLKGPQFLHVVT+KGQGYKLAEADPVLYHGPGKFNPA Sbjct: 241 FNYIGPIDGHDLESLIPTLQNLKNLKGPQFLHVVTKKGQGYKLAEADPVLYHGPGKFNPA 300 Query: 300 EGIKPAAASKQTYTQVFGEWLCDMAAQDKTLVGITPAMREGSGMVSFEQKFPDRYYDVGI 359 EGIKPA SK TYTQVFG+WLCDMAAQD L+GITPAM GSG+ +F Q+FP R+YDVGI Sbjct: 301 EGIKPATVSKMTYTQVFGDWLCDMAAQDDKLIGITPAMSGGSGLDTFAQRFPQRFYDVGI 360 Query: 360 AEQHAVTFAAGMACEGMKPVVAIYSTFLQRAYDQLIHDVALQNLDVTFALDRAGXQNLD 418 AEQHAVTFAAG+ACEG+KPVVAIYSTFLQRAYDQLIHDVALQNLDVTFALDR+G D Sbjct: 361 AEQHAVTFAAGLACEGLKPVVAIYSTFLQRAYDQLIHDVALQNLDVTFALDRSGLVGAD 419 >ref|ZP_08274827.1| 1-deoxy-D-xylulose 5-phosphate synthase [Oxalobacteraceae bacterium IMCC9480] gb|EGF31698.1| 1-deoxy-D-xylulose 5-phosphate synthase [Oxalobacteraceae bacterium IMCC9480] Length = 616 Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/419 (85%), Positives = 389/419 (92%), Gaps = 3/419 (0%) Query: 1 MLNTINSPADLRQLPRTQLKPLADELRAFILDSVSKTGGHLSSNLGTVELTIALHYVFNT 60 +L IN PADLR+LPR QL+ LADELRAF++DSVSKTGGHLSSNLGTVELTIALHYVFNT Sbjct: 3 LLEKINQPADLRRLPRNQLRKLADELRAFVIDSVSKTGGHLSSNLGTVELTIALHYVFNT 62 Query: 61 PEDRIVWDVGHQTYPHKILTGRRDQMSTLRQLDGISGFPRRAESEHDTFGTAHSSTSISA 120 PEDR+VWDVGHQTYPHKILTGRRDQM TLRQ DGISGFPRRAESE+DTFGTAHSSTSISA Sbjct: 63 PEDRLVWDVGHQTYPHKILTGRRDQMHTLRQRDGISGFPRRAESEYDTFGTAHSSTSISA 122 Query: 121 ALGMALAAKTKGEDRHAIAVXLAADGAMTAGMAFEAMNNAGISEDVNLLVILNDNDMSIS 180 ALGMALAA+TKGE+RHA+A+ DGAMTAGM FEAMNNAG+ +D+NLLVILNDNDMSIS Sbjct: 123 ALGMALAARTKGENRHAVAII--GDGAMTAGMVFEAMNNAGVYDDINLLVILNDNDMSIS 180 Query: 181 PPVGALNRYLARLMSGQFYAKAKNVGKSMLPGPMLELAKRFEEHAKGMIVPATMFEEFGF 240 PPVGALN+YLARLMSG+FYA A+NVGKS+LP P+LELAKRFEEHAKGM+VPATMFEEFGF Sbjct: 181 PPVGALNQYLARLMSGKFYAAARNVGKSVLPAPVLELAKRFEEHAKGMVVPATMFEEFGF 240 Query: 241 NYIGPIDGHDLDSLIPTLQNLKNLKGPQFLHVVTRKGQGYKLAEADPVLYHGPGKFNPAE 300 NYIGPIDGHDLD+LIPTLQNLK+LKGPQFLHVVT+KGQGYKLAEADPVLYHGPGKFNP Sbjct: 241 NYIGPIDGHDLDALIPTLQNLKHLKGPQFLHVVTKKGQGYKLAEADPVLYHGPGKFNPEV 300 Query: 301 GIKPAAA-SKQTYTQVFGEWLCDMAAQDKTLVGITPAMREGSGMVSFEQKFPDRYYDVGI 359 GIKPA +K TYTQVFG+WLCDMAAQDK L+GITPAMREGSGMV FEQ+FP RY+DVGI Sbjct: 301 GIKPATVPAKMTYTQVFGDWLCDMAAQDKRLIGITPAMREGSGMVRFEQQFPARYFDVGI 360 Query: 360 AEQHAVTFAAGMACEGMKPVVAIYSTFLQRAYDQLIHDVALQNLDVTFALDRAGXQNLD 418 AEQHAVTFAAGMA EG+KPV+AIYSTFLQR YDQLIHDVALQ+LDVTFALDRAG D Sbjct: 361 AEQHAVTFAAGMATEGLKPVLAIYSTFLQRGYDQLIHDVALQDLDVTFALDRAGLVGAD 419 >ref|YP_001098635.1| 1-deoxy-D-xylulose-5-phosphate synthase [Herminiimonas arsenicoxydans] emb|CAL60506.1| 1-deoxy-D-xylulose-5-phosphate synthase (1-deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS) [Herminiimonas arsenicoxydans] Length = 609 Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/408 (87%), Positives = 378/408 (92%), Gaps = 2/408 (0%) Query: 11 LRQLPRTQLKPLADELRAFILDSVSKTGGHLSSNLGTVELTIALHYVFNTPEDRIVWDVG 70 +R R QLK LADELRAF+L+SVS TGGHLSSNLGTVELTIALH VFNTPEDRI+WDVG Sbjct: 1 MRHFTRPQLKQLADELRAFVLESVSATGGHLSSNLGTVELTIALHNVFNTPEDRIIWDVG 60 Query: 71 HQTYPHKILTGRRDQMSTLRQLDGISGFPRRAESEHDTFGTAHSSTSISAALGMALAAKT 130 HQTYPHKILTGRRDQM +LRQ DGISGFPRR ES +DTFGTAHSSTSISAALGMALAA+T Sbjct: 61 HQTYPHKILTGRRDQMHSLRQRDGISGFPRRDESVYDTFGTAHSSTSISAALGMALAART 120 Query: 131 KGEDRHAIAVXLAADGAMTAGMAFEAMNNAGISEDVNLLVILNDNDMSISPPVGALNRYL 190 KGE+RHAIAV DGAMTAGMAFEA+NNAGI +D+NLLVILNDNDMSISPPVGALNRYL Sbjct: 121 KGENRHAIAVI--GDGAMTAGMAFEALNNAGIHDDINLLVILNDNDMSISPPVGALNRYL 178 Query: 191 ARLMSGQFYAKAKNVGKSMLPGPMLELAKRFEEHAKGMIVPATMFEEFGFNYIGPIDGHD 250 ARLMSGQFYA AKNVGK++LP P+ ELAKRFEEHAKGMIVPATMFEEFGFNYIGPIDGHD Sbjct: 179 ARLMSGQFYAAAKNVGKTVLPAPVRELAKRFEEHAKGMIVPATMFEEFGFNYIGPIDGHD 238 Query: 251 LDSLIPTLQNLKNLKGPQFLHVVTRKGQGYKLAEADPVLYHGPGKFNPAEGIKPAAASKQ 310 LDSLIPTLQNLK+LKGPQFLHVVT+KGQGYKLAEADPVLYHGPGKF+PAEGIKPAAASK Sbjct: 239 LDSLIPTLQNLKHLKGPQFLHVVTKKGQGYKLAEADPVLYHGPGKFDPAEGIKPAAASKV 298 Query: 311 TYTQVFGEWLCDMAAQDKTLVGITPAMREGSGMVSFEQKFPDRYYDVGIAEQHAVTFAAG 370 TYT VFG+WLCDMAA D L+GITPAMREGSGMV FE++FP RYYDVGIAEQHAVTFAAG Sbjct: 299 TYTSVFGDWLCDMAAADDKLIGITPAMREGSGMVEFERRFPGRYYDVGIAEQHAVTFAAG 358 Query: 371 MACEGMKPVVAIYSTFLQRAYDQLIHDVALQNLDVTFALDRAGXQNLD 418 MACEG+KPVVAIYSTFLQRAYDQLIHDVALQNLDVTFALDRAG D Sbjct: 359 MACEGLKPVVAIYSTFLQRAYDQLIHDVALQNLDVTFALDRAGLVGAD 406