BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0023.0010.p (294 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777204.1| TRAP-type C4-dicarboxylate transport system ... 288 7e-76 ref|YP_001791402.1| TRAP dicarboxylate transporter subunit Dctp ... 262 4e-68 ref|YP_003911144.1| TRAP dicarboxylate transporter DctP subunit ... 260 2e-67 ref|YP_001156317.1| TRAP dicarboxylate transporter, DctP subunit... 246 4e-63 ref|YP_002498323.1| TRAP dicarboxylate transporter subunit DctP ... 228 1e-57 >ref|YP_003777204.1| TRAP-type C4-dicarboxylate transport system periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ65296.1| TRAP-type C4-dicarboxylate transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 344 Score = 288 bits (737), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 153/210 (72%), Positives = 170/210 (80%), Gaps = 3/210 (1%) Query: 1 MGNPTASITRRRFLKTVSVASAAAATGMISTQAFAAAEFTLKYANNLPATHPMNLRAKEM 60 M T ITRR FLKT SVASAAAATG++ST A AA EFT KYANNLP THPMN RAKEM Sbjct: 1 MAQSTGKITRRNFLKTASVASAAAATGLVSTSAHAA-EFTFKYANNLPVTHPMNARAKEM 59 Query: 61 AAKIATESKGRIDFQVYPNNQLGNDTDTLGQVRSGAVDFFTLSPLILGTLVPAAQISGVG 120 AA IA +SKGRI+ Q+YPNNQLG DTD L QVR+GA+DFFTLSPLILGTLVPAAQISG+G Sbjct: 60 AAAIAEQSKGRIELQLYPNNQLGTDTDMLSQVRAGAIDFFTLSPLILGTLVPAAQISGIG 119 Query: 121 FAFKDYNQVWAALDGELGAHVRKQIDAKSTVFAFEKIWDNGYRQITNSTRAINKPEDLKG 180 FAFKDY+QVW A+DGELGAHVRKQI+A+ST+FAFEKIWDNGYRQITNST+ I EDLKG Sbjct: 120 FAFKDYSQVWPAMDGELGAHVRKQIEARSTLFAFEKIWDNGYRQITNSTKPIKVAEDLKG 179 Query: 181 MKLRXINKPEDLKGMKS--PAPSAIAFPPV 208 MKLR P K+ AP++I F V Sbjct: 180 MKLRVPPSPLWTSMFKAFDAAPTSINFAEV 209 >ref|YP_001791402.1| TRAP dicarboxylate transporter subunit Dctp [Leptothrix cholodnii SP-6] gb|ACB34637.1| TRAP dicarboxylate transporter, DctP subunit [Leptothrix cholodnii SP-6] Length = 338 Score = 262 bits (670), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 127/179 (70%), Positives = 150/179 (83%), Gaps = 6/179 (3%) Query: 8 ITRRRFLKTVSVASAAAATGMISTQAFAA--AEFTLKYANNLPATHPMNLRAKEMAAKIA 65 ITRR T+ + A A ++T A A AEFTLKYANNLP THPMN+RA EMAA I Sbjct: 3 ITRR----TLLAGTGALALPGVATHALAQNKAEFTLKYANNLPITHPMNVRATEMAAAIL 58 Query: 66 TESKGRIDFQVYPNNQLGNDTDTLGQVRSGAVDFFTLSPLILGTLVPAAQISGVGFAFKD 125 ESKGR+D +V+P++QLG DTD L Q+RSGA+D+FTLSPLILGTLVP+AQISGVGFAFKD Sbjct: 59 AESKGRVDLKVFPSSQLGTDTDMLSQIRSGAIDYFTLSPLILGTLVPSAQISGVGFAFKD 118 Query: 126 YNQVWAALDGELGAHVRKQIDAKSTVFAFEKIWDNGYRQITNSTRAINKPEDLKGMKLR 184 YNQVWAA+DG+LGAHVRK+I A+ST+FAF+KIWDNGYRQ+T+S RAI KPEDLKGMK+R Sbjct: 119 YNQVWAAMDGDLGAHVRKEIAARSTMFAFDKIWDNGYRQMTSSARAITKPEDLKGMKMR 177 >ref|YP_003911144.1| TRAP dicarboxylate transporter DctP subunit [Burkholderia sp. CCGE1003] gb|ADN61853.1| TRAP dicarboxylate transporter, DctP subunit [Burkholderia sp. CCGE1003] Length = 339 Score = 260 bits (664), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 144/241 (59%), Positives = 175/241 (72%), Gaps = 8/241 (3%) Query: 9 TRRRFLKTVSVASAAAATGMISTQAFAAAEFTLKYANNLPATHPMNLRAKEMAAKIATES 68 +RR FLK S+A+AA+ G+ A AA EFTLKYANNLPATHPMN+RAK+ AA+IA+ES Sbjct: 5 SRRDFLKCASLAAAASFAGLHGRSAHAA-EFTLKYANNLPATHPMNVRAKQAAARIASES 63 Query: 69 KGRIDFQVYPNNQLGNDTDTLGQVRSGAVDFFTLSPLILGTLVPAAQISGVGFAFKDYNQ 128 KGRIDFQVY NNQLG+DTD L QVRSGA+D+FTLSPLILGTLVPAAQI+GVGFAFKDY+Q Sbjct: 64 KGRIDFQVYSNNQLGSDTDMLSQVRSGAIDYFTLSPLILGTLVPAAQITGVGFAFKDYDQ 123 Query: 129 VWAALDGELGAHVRKQIDAKSTVFAFEKIWDNGYRQITNSTRAINKPEDLKGMKLRXINK 188 VW ALDG LGA VR+QI AK++VFAFEKIWDNGYRQ T S R+I+ P+DLKG++LR Sbjct: 124 VWGALDGALGARVREQI-AKTSVFAFEKIWDNGYRQTTTSNRSIHVPDDLKGIRLRVPMS 182 Query: 189 PEDLKGMKS--PAPSAIAFPPV----RHRSAAPRPRHIDVGSAGTSAYRQPRCAHTNPFA 242 P +S +P++I F V + R + + +A Q C+ TN Sbjct: 183 PIWTSMFQSLGASPASINFSEVYSSLQTRVVEGQENPLATITAAKLYEVQKYCSLTNHMW 242 Query: 243 D 243 D Sbjct: 243 D 243 >ref|YP_001156317.1| TRAP dicarboxylate transporter, DctP subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gb|ABP34753.1| TRAP dicarboxylate transporter, DctP subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 337 Score = 246 bits (627), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 116/179 (64%), Positives = 145/179 (81%), Gaps = 5/179 (2%) Query: 7 SITRRRFLKTVSVASAAAATGMISTQAFA-AAEFTLKYANNLPATHPMNLRAKEMAAKIA 65 + TRR F+K +A A +++ AFA AEF +K+ +NLPATHP+N+ A +MA+KI Sbjct: 2 TYTRRDFMKHAGIA----ALPLVAGNAFAQTAEFNMKFGSNLPATHPLNIHAYKMASKIK 57 Query: 66 TESKGRIDFQVYPNNQLGNDTDTLGQVRSGAVDFFTLSPLILGTLVPAAQISGVGFAFKD 125 E+KGR+D QV+P NQLGNDTD L Q+RSGA+DF TLSPLILG+LVP AQI+GVGFAFKD Sbjct: 58 VETKGRVDIQVFPYNQLGNDTDMLSQLRSGALDFMTLSPLILGSLVPQAQINGVGFAFKD 117 Query: 126 YNQVWAALDGELGAHVRKQIDAKSTVFAFEKIWDNGYRQITNSTRAINKPEDLKGMKLR 184 Y QVWAA+DGELGA+VR+QI T+FAF+KIWDNGYR++TNS R INKP+DLKG+KLR Sbjct: 118 YKQVWAAMDGELGAYVRRQIANTGTIFAFDKIWDNGYREVTNSVRPINKPDDLKGIKLR 176 >ref|YP_002498323.1| TRAP dicarboxylate transporter subunit DctP [Methylobacterium nodulans ORS 2060] gb|ACL58020.1| TRAP dicarboxylate transporter, DctP subunit [Methylobacterium nodulans ORS 2060] Length = 339 Score = 228 bits (580), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 117/203 (57%), Positives = 146/203 (71%), Gaps = 3/203 (1%) Query: 8 ITRRRFLKTVSVASAAAATGMISTQAFAAAEFTLKYANNLPATHPMNLRAKEMAAKIATE 67 ++RRR L S A + G AAEFT KYANNLP THPMN+RA+EMAA I E Sbjct: 3 LSRRRLLAFGSSAVVGSLIGAPRIVRAQAAEFTYKYANNLPDTHPMNVRAREMAAAIKAE 62 Query: 68 SKGRIDFQVYPNNQLGNDTDTLGQVRSGAVDFFTLSPLILGTLVPAAQISGVGFAFKDYN 127 + GR D Q++P++QLG+DTDTL Q+R+G V+FFTLSPLIL LVPAA ISG+GFAF DY+ Sbjct: 63 TNGRFDLQIFPSSQLGSDTDTLSQLRAGGVEFFTLSPLILSILVPAASISGMGFAFPDYD 122 Query: 128 QVWAALDGELGAHVRKQIDAKSTVFAFEKIWDNGYRQITNSTRAINKPEDLKGMKLRXIN 187 VW A+DG+LGAHVR+QI AKS +FA EKIWDNG+RQ T+S+R IN P+DL+G K+R Sbjct: 123 AVWKAMDGDLGAHVRQQI-AKSGLFAMEKIWDNGFRQTTSSSRQINTPDDLRGFKIRVPP 181 Query: 188 KPEDLKGMKS--PAPSAIAFPPV 208 P K+ AP++I F V Sbjct: 182 SPLWTSMYKAFEAAPTSINFNEV 204