BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0023.0008.p (373 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_546901.1| LacI family transcription regulator [Polaromona... 481 e-134 ref|YP_002943862.1| LacI family transcriptional regulator [Vario... 474 e-131 ref|YP_004156174.1| LacI family transcriptional regulator [Vario... 462 e-128 ref|YP_554860.1| LacI family transcription regulator [Burkholder... 445 e-123 gb|EFV87430.1| LacI family Transcriptional regulator [Achromobac... 444 e-122 >ref|YP_546901.1| LacI family transcription regulator [Polaromonas sp. JS666] gb|ABE42003.1| transcriptional regulator, LacI family [Polaromonas sp. JS666] Length = 354 Score = 481 bits (1238), Expect = e-134, Method: Compositional matrix adjust. Identities = 236/352 (67%), Positives = 278/352 (78%), Gaps = 9/352 (2%) Query: 27 EGNNEGGRARVTDIARAAGVSTATVDRVLNQRPGVRAATMQKVLKAAAALDYLPEADLYK 86 E ++ RARV DIARAA VSTATVDRVLN+RPGVR AT QKVLK AA LDYLPE LY Sbjct: 7 ETKDQPQRARVADIARAAKVSTATVDRVLNRRPGVRDATAQKVLKVAAELDYLPETGLYA 66 Query: 87 AMQPKPMRLVFLLPPQSNRFMQMLGDYIAFSEEQLAPFNVKCKCHHIEGFNPSVLAKRLL 146 A+ PMRL FLLP SNRF++MLGD + +S+E L PFNVKC+ E FNP LA LL Sbjct: 67 ALAAAPMRLTFLLPDGSNRFIRMLGDTVGYSQEHLTPFNVKCRTELFESFNPQQLAASLL 126 Query: 147 HYGRQADGVAFMALEHPLVREAVNTLVAEGIPVVTLISDLSNSRRAAYV-----AAGRTA 201 +G+++DG+AFMALEHP VREAV+ L G+P +TLISDLS SRRA YV AAGRTA Sbjct: 127 KHGQRSDGIAFMALEHPAVREAVSVLADRGVPTITLISDLSGSRRAGYVGLDNRAAGRTA 186 Query: 202 GYLLGRFLGGAGNAKAKPMKVAMIAGSLSYRGHEEREMGFLHVLEEMFPHLQVVGLREGH 261 GYL+GRF+ A+ KVA+IAGSLSYR HEERE GFLHV+EEMFP LQVVGLREG Sbjct: 187 GYLVGRFIAPG----ARGGKVALIAGSLSYRAHEEREAGFLHVIEEMFPTLQVVGLREGQ 242 Query: 262 DDADTNYKQARTLLEQYPDLVGMYNIGGASDGVGRALRESGREQKVVFIGHGLTPDTRGL 321 DDA NY+Q RTLLEQYPDL G+YNIGGASDGV RAL+E GRE KVVFIGHGLTPDTR + Sbjct: 243 DDAQKNYEQTRTLLEQYPDLAGIYNIGGASDGVARALKEMGREHKVVFIGHGLTPDTRAM 302 Query: 322 LIDGTVDAILTQHPQNMIMNCVRIFGNLREKKEALAGVEAVRISVMLRENLP 373 LIDG++DA++TQ PQ+ +M+CVR+F NLR+K++ ++GV+AVR V+ RENLP Sbjct: 303 LIDGSMDAVITQSPQSAMMSCVRMFTNLRDKRDVMSGVDAVRSQVIFRENLP 354 >ref|YP_002943862.1| LacI family transcriptional regulator [Variovorax paradoxus S110] gb|ACS18596.1| transcriptional regulator, LacI family [Variovorax paradoxus S110] Length = 351 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 237/362 (65%), Positives = 281/362 (77%), Gaps = 19/362 (5%) Query: 17 DPRLPADGAGEGNNEGGRARVTDIARAAGVSTATVDRVLNQRPGVRAATMQKVLKAAAAL 76 +P PAD RARV DIARAA VSTATVDRVLN+RPGVR AT+Q+VLKAA L Sbjct: 4 NPSPPADAR--------RARVVDIARAAQVSTATVDRVLNRRPGVRDATVQRVLKAAGEL 55 Query: 77 DYLPEADLYKAMQPKPMRLVFLLPPQSNRFMQMLGDYIAFSEEQLAPFNVKCKCHHIEGF 136 DYLP +LY A+ P P+RLVFLLP +NRF++MLGD + +S+E APFNV+C+ IE F Sbjct: 56 DYLPGPELYAALTPPPLRLVFLLPAGTNRFIRMLGDMVGYSQEHWAPFNVQCRTVFIESF 115 Query: 137 NPSVLAKRLLHYGRQADGVAFMALEHPLVREAVNTLVAEGIPVVTLISDLSNSRRAAYV- 195 NP LA L +G++ DG+A MALEHP VREAV L A G+PVVTLISDLSNS RAA+V Sbjct: 116 NPHELADALRKHGQRCDGIAMMALEHPAVREAVAALAARGLPVVTLISDLSNSERAAFVG 175 Query: 196 ----AAGRTAGYLLGRFLGGAGNAKAKPMKVAMIAGSLSYRGHEEREMGFLHVLEEMFPH 251 AAGRTAGYL+GRF+G A+ KVA+IAGSLSY+ HEERE GFLHV++EMFP Sbjct: 176 LDNRAAGRTAGYLIGRFIG------ARAAKVALIAGSLSYKAHEEREAGFLHVIDEMFPR 229 Query: 252 LQVVGLREGHDDADTNYKQARTLLEQYPDLVGMYNIGGASDGVGRALRESGREQKVVFIG 311 L+VVGLREG DDA NY+Q R LLEQYPD+ G+YNIGGASDGV RAL+E+GREQKVVFIG Sbjct: 230 LEVVGLREGQDDAGKNYRQTRALLEQYPDMGGIYNIGGASDGVARALKEAGREQKVVFIG 289 Query: 312 HGLTPDTRGLLIDGTVDAILTQHPQNMIMNCVRIFGNLREKKEALAGVEAVRISVMLREN 371 HGLTPDTR LLIDG++DA++TQ P +M+CVRIF NLR+ +EAL+GVE R V+ REN Sbjct: 290 HGLTPDTRTLLIDGSMDAVITQSPHTTLMSCVRIFANLRDGREALSGVETTRSQVIFREN 349 Query: 372 LP 373 LP Sbjct: 350 LP 351 >ref|YP_004156174.1| LacI family transcriptional regulator [Variovorax paradoxus EPS] gb|ADU38063.1| transcriptional regulator, LacI family [Variovorax paradoxus EPS] Length = 352 Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust. Identities = 233/345 (67%), Positives = 276/345 (80%), Gaps = 11/345 (3%) Query: 34 RARVTDIARAAGVSTATVDRVLNQRPGVRAATMQKVLKAAAALDYLPEADLYKAMQPKPM 93 RARV DIARAA VSTATVDRVLN+RPGVR AT+Q+VLKAA LDYLP +LY A+ P P+ Sbjct: 14 RARVVDIARAAQVSTATVDRVLNRRPGVRDATVQRVLKAAGELDYLPGPELYAALTPPPL 73 Query: 94 RLVFLLPPQSNRFMQMLGDYIAFSEEQLAPFNVKCKCHHIEGFNPSVLAKRLLHYGRQAD 153 RLVFLLP +NRF++MLGD + +S+E APFNV+C+ IE FNP LA L +G++ D Sbjct: 74 RLVFLLPAGTNRFIRMLGDMVGYSQEHWAPFNVQCRTVFIESFNPHELANALRKHGQRCD 133 Query: 154 GVAFMALEHPLVREAVNTLVAEGIPVVTLISDLSNSRRAAYV-----AAGRTAGYLLGRF 208 G+A MALEHP VREAV L A G+PVVTLISDLSNS RAA+V AAGRTAGYL+GRF Sbjct: 134 GIAMMALEHPAVREAVAALAARGLPVVTLISDLSNSERAAFVGLDNRAAGRTAGYLIGRF 193 Query: 209 LGGAGNAKAKPMKVAMIAGSLSYRGHEEREMGFLHVLEEMFPHLQVVGLREGHDDADTNY 268 +G A+ K A+IAGSLSY+ HEERE GFLHV++EMFP L+VVGLREG DDA NY Sbjct: 194 IG------ARAAKAALIAGSLSYKAHEEREAGFLHVIDEMFPKLEVVGLREGQDDAGKNY 247 Query: 269 KQARTLLEQYPDLVGMYNIGGASDGVGRALRESGREQKVVFIGHGLTPDTRGLLIDGTVD 328 +Q R LLEQYPD+ G+YNIGGASDGV RAL+E+GREQKVVFIGHGLTPDTR LLIDG++D Sbjct: 248 RQTRALLEQYPDMGGIYNIGGASDGVARALKEAGREQKVVFIGHGLTPDTRALLIDGSMD 307 Query: 329 AILTQHPQNMIMNCVRIFGNLREKKEALAGVEAVRISVMLRENLP 373 A++TQ P +M+CVRIF NLR+K+EAL+GVE R V+ RENLP Sbjct: 308 AVITQSPHTTLMSCVRIFTNLRDKREALSGVETTRSQVIFRENLP 352 >ref|YP_554860.1| LacI family transcription regulator [Burkholderia xenovorans LB400] gb|ABE35510.1| transcriptional regulator, LacI family [Burkholderia xenovorans LB400] Length = 351 Score = 445 bits (1144), Expect = e-123, Method: Compositional matrix adjust. Identities = 219/348 (62%), Positives = 275/348 (79%), Gaps = 16/348 (4%) Query: 34 RARVTDIARAAGVSTATVDRVLNQRPGVRAATMQKVLKAAAALDYL--PEADLYKAMQPK 91 RAR+ DIARAAGVSTATVDRVLN R GVRA T Q+VL+AAA L YL PEA + A K Sbjct: 12 RARIPDIARAAGVSTATVDRVLNGREGVRAVTAQRVLQAAAQLGYLLTPEAPVASA--SK 69 Query: 92 PMRLVFLLPPQSNRFMQMLGDYIAFSEEQLAPFNVKCKCHHIEGFNPSVLAKRLLHYGRQ 151 PMR+ FLLP +NR++ MLGDYI F+ +Q ++KC+ H++E FNP LA RLLHYG++ Sbjct: 70 PMRIAFLLPAGTNRYLHMLGDYIDFAHDQWNALDMKCRVHYVESFNPKELADRLLHYGQR 129 Query: 152 ADGVAFMALEHPLVREAVNTLVAEGIPVVTLISDLSNSRRAAYV-----AAGRTAGYLLG 206 ADGV FMALEHP+VR+AVN L +G+P +TLISDLSN+RR AYV AAGRTA LLG Sbjct: 130 ADGVVFMALEHPVVRDAVNALADQGVPAITLISDLSNARRLAYVGIDNRAAGRTAALLLG 189 Query: 207 RFLGGAGNAKAKPM-KVAMIAGSLSYRGHEEREMGFLHVLEEMFPHLQVVGLREGHDDAD 265 RF+G +P K+AM+AGSL+YRGHEERE+GFLH++E MFP ++V+GLREGHDD++ Sbjct: 190 RFMG------PRPSGKIAMLAGSLNYRGHEEREIGFLHLIESMFPQVRVIGLREGHDDSE 243 Query: 266 TNYKQARTLLEQYPDLVGMYNIGGASDGVGRALRESGREQKVVFIGHGLTPDTRGLLIDG 325 NY Q R LLEQ+PDL G+YN GG SDGV RA+ E+ EQK++F+GHGLTPDTR LLIDG Sbjct: 244 RNYMQTRKLLEQHPDLAGIYNSGGGSDGVARAIVEARSEQKILFVGHGLTPDTRALLIDG 303 Query: 326 TVDAILTQHPQNMIMNCVRIFGNLREKKEALAGVEAVRISVMLRENLP 373 T+DA++TQ PQ M+ NC+RIF N+REK++AL+ V+ V+ S++LRENLP Sbjct: 304 TMDALITQTPQAMVGNCLRIFRNVREKRDALSDVKPVQFSIVLRENLP 351 >gb|EFV87430.1| LacI family Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 352 Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust. Identities = 216/344 (62%), Positives = 265/344 (77%), Gaps = 11/344 (3%) Query: 35 ARVTDIARAAGVSTATVDRVLNQRPGVRAATMQKVLKAAAALDYLPEADLYKAMQPKPMR 94 A + ++A AGVSTAT DRVLN+RPGVR +T Q+VLKAAA LDYLPEADLY AM P+PMR Sbjct: 15 ATLAEVAALAGVSTATADRVLNRRPGVRGSTAQRVLKAAAELDYLPEADLYAAMAPEPMR 74 Query: 95 LVFLLPPQSNRFMQMLGDYIAFSEEQLAPFNVKCKCHHIEGFNPSVLAKRLLHYGRQADG 154 LV LLP SNRF++MLGD ++++ E AP N +C+ ++E FNP LA+ LLH+GR+ADG Sbjct: 75 LVILLPRGSNRFLRMLGDSVSYAHEHFAPLNARCQVDYVESFNPEALAQALLHHGRRADG 134 Query: 155 VAFMALEHPLVREAVNTLVAEGIPVVTLISDLSNSRRAAYV-----AAGRTAGYLLGRFL 209 +AFMALEHP+VREAVN L +G+P VTLISDL+NS R AYV AAGRTAGYL+ RF+ Sbjct: 135 IAFMALEHPVVREAVNALAQQGVPTVTLISDLANSARVAYVGLDNRAAGRTAGYLIARFI 194 Query: 210 GGAGNAKAKPMKVAMIAGSLSYRGHEEREMGFLHVLEEMFPHLQVVGLREGHDDADTNYK 269 G + VA+IAGS YR HEERE GFL + E F +QVV LREG+DDA NY+ Sbjct: 195 G------PRAAHVALIAGSRHYRAHEEREGGFLQLYAEQFQAMQVVDLREGYDDAQRNYE 248 Query: 270 QARTLLEQYPDLVGMYNIGGASDGVGRALRESGREQKVVFIGHGLTPDTRGLLIDGTVDA 329 Q R LLEQYP L G+YNIGGASDGV RAL+E+G + +VVFIGHGLTPDTR LLIDGT+DA Sbjct: 249 QTRQLLEQYPQLAGIYNIGGASDGVARALKEAGLQHRVVFIGHGLTPDTRALLIDGTMDA 308 Query: 330 ILTQHPQNMIMNCVRIFGNLREKKEALAGVEAVRISVMLRENLP 373 ++TQ P +M+CVRIF N+R+K+ ++GVE R V+LRENLP Sbjct: 309 VITQSPVEALMSCVRIFCNVRDKRSPMSGVEMNRSQVILRENLP 352