BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0023.0006.p (258 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777204.1| TRAP-type C4-dicarboxylate transport system ... 456 e-126 ref|YP_001791402.1| TRAP dicarboxylate transporter subunit Dctp ... 442 e-122 ref|YP_001156317.1| TRAP dicarboxylate transporter, DctP subunit... 400 e-109 ref|YP_003911144.1| TRAP dicarboxylate transporter DctP subunit ... 395 e-108 ref|YP_486299.1| TRAP dicarboxylate transporter, DctP subunit [R... 376 e-102 >ref|YP_003777204.1| TRAP-type C4-dicarboxylate transport system periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ65296.1| TRAP-type C4-dicarboxylate transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 344 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 212/258 (82%), Positives = 234/258 (90%) Query: 1 MLSQVRAGAIDFFTISPEVLGTLVSAGQISGVGFAFKDYNQVWAAMDGDLGAYVRKQIAA 60 MLSQVRAGAIDFFT+SP +LGTLV A QISG+GFAFKDY+QVW AMDG+LGA+VRKQI A Sbjct: 87 MLSQVRAGAIDFFTLSPLILGTLVPAAQISGIGFAFKDYSQVWPAMDGELGAHVRKQIEA 146 Query: 61 TTSLFAFERCWDNGYRQVTTSTRPITRPEDFKGMKLRVPPSPLWTSMFRAFDAAPASINF 120 ++LFAFE+ WDNGYRQ+T ST+PI ED KGMKLRVPPSPLWTSMF+AFDAAP SINF Sbjct: 147 RSTLFAFEKIWDNGYRQITNSTKPIKVAEDLKGMKLRVPPSPLWTSMFKAFDAAPTSINF 206 Query: 121 AEVYSALQTKIVEGQENPMAIISTAKLYEVQKYCSMTNHMWDGFWFLANKKSFERLPKDL 180 AEVYSALQTKIVEGQENPMAIISTAKLYEVQKYCS+TNHMWDGFWFL NKKSFERLPKDL Sbjct: 207 AEVYSALQTKIVEGQENPMAIISTAKLYEVQKYCSITNHMWDGFWFLGNKKSFERLPKDL 266 Query: 181 QEIVTRNVNEAGIKQRADVKALNDSLATEMKGKGLAFNDTDNEAFRAKLRSAGFYAEWHK 240 QE++TR +NEAG+ QRADV+ LNDSL EMKGKGLAFN+ D ++FRAKLR+AGFYAEW K Sbjct: 267 QELMTRIINEAGVNQRADVRKLNDSLVDEMKGKGLAFNNADADSFRAKLRAAGFYAEWKK 326 Query: 241 KFGPEAWALLEKYTGKLA 258 KFG E WALLEKYTGKLA Sbjct: 327 KFGDEPWALLEKYTGKLA 344 >ref|YP_001791402.1| TRAP dicarboxylate transporter subunit Dctp [Leptothrix cholodnii SP-6] gb|ACB34637.1| TRAP dicarboxylate transporter, DctP subunit [Leptothrix cholodnii SP-6] Length = 338 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 199/257 (77%), Positives = 235/257 (91%) Query: 1 MLSQVRAGAIDFFTISPEVLGTLVSAGQISGVGFAFKDYNQVWAAMDGDLGAYVRKQIAA 60 MLSQ+R+GAID+FT+SP +LGTLV + QISGVGFAFKDYNQVWAAMDGDLGA+VRK+IAA Sbjct: 81 MLSQIRSGAIDYFTLSPLILGTLVPSAQISGVGFAFKDYNQVWAAMDGDLGAHVRKEIAA 140 Query: 61 TTSLFAFERCWDNGYRQVTTSTRPITRPEDFKGMKLRVPPSPLWTSMFRAFDAAPASINF 120 +++FAF++ WDNGYRQ+T+S R IT+PED KGMK+RVPPSP W SMF+AF+A+PA+INF Sbjct: 141 RSTMFAFDKIWDNGYRQMTSSARAITKPEDLKGMKMRVPPSPFWVSMFKAFEASPATINF 200 Query: 121 AEVYSALQTKIVEGQENPMAIISTAKLYEVQKYCSMTNHMWDGFWFLANKKSFERLPKDL 180 AEVY+ALQTKIV+GQENP+AII+TAKL+EVQ++CS+TNHMWDGFWFLANKKSFERLP DL Sbjct: 201 AEVYTALQTKIVDGQENPLAIIATAKLFEVQQFCSITNHMWDGFWFLANKKSFERLPADL 260 Query: 181 QEIVTRNVNEAGIKQRADVKALNDSLATEMKGKGLAFNDTDNEAFRAKLRSAGFYAEWHK 240 QEIVTRNVN+AG+ QR DV+ LNDSL E+K KG+A N TD E FRAKLR+AGFYAEWHK Sbjct: 261 QEIVTRNVNKAGLNQRDDVRKLNDSLLGELKAKGMAINTTDAELFRAKLRAAGFYAEWHK 320 Query: 241 KFGPEAWALLEKYTGKL 257 KFG EAWA+LEKYTGKL Sbjct: 321 KFGDEAWAVLEKYTGKL 337 >ref|YP_001156317.1| TRAP dicarboxylate transporter, DctP subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gb|ABP34753.1| TRAP dicarboxylate transporter, DctP subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 337 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 178/258 (68%), Positives = 217/258 (84%) Query: 1 MLSQVRAGAIDFFTISPEVLGTLVSAGQISGVGFAFKDYNQVWAAMDGDLGAYVRKQIAA 60 MLSQ+R+GA+DF T+SP +LG+LV QI+GVGFAFKDY QVWAAMDG+LGAYVR+QIA Sbjct: 80 MLSQLRSGALDFMTLSPLILGSLVPQAQINGVGFAFKDYKQVWAAMDGELGAYVRRQIAN 139 Query: 61 TTSLFAFERCWDNGYRQVTTSTRPITRPEDFKGMKLRVPPSPLWTSMFRAFDAAPASINF 120 T ++FAF++ WDNGYR+VT S RPI +P+D KG+KLR PP P+W S+F+A AAP +NF Sbjct: 140 TGTIFAFDKIWDNGYREVTNSVRPINKPDDLKGIKLRTPPGPMWVSLFKALGAAPTPLNF 199 Query: 121 AEVYSALQTKIVEGQENPMAIISTAKLYEVQKYCSMTNHMWDGFWFLANKKSFERLPKDL 180 AEVYSALQ+K+V+GQENP+AII TAKLYEVQKYCSMTNHMWDG+WF+ NKK FE+LP DL Sbjct: 200 AEVYSALQSKVVDGQENPLAIIYTAKLYEVQKYCSMTNHMWDGYWFMGNKKLFEQLPPDL 259 Query: 181 QEIVTRNVNEAGIKQRADVKALNDSLATEMKGKGLAFNDTDNEAFRAKLRSAGFYAEWHK 240 Q IVTRNV E+ + QRADV+ +ND L +E+K KG+A NDT+ + FR KLR AGFY+EW Sbjct: 260 QVIVTRNVAESAVLQRADVRKMNDGLQSELKAKGMAVNDTNPDPFREKLRQAGFYSEWKA 319 Query: 241 KFGPEAWALLEKYTGKLA 258 KFG EAW+LLEKY GKLA Sbjct: 320 KFGDEAWSLLEKYVGKLA 337 >ref|YP_003911144.1| TRAP dicarboxylate transporter DctP subunit [Burkholderia sp. CCGE1003] gb|ADN61853.1| TRAP dicarboxylate transporter, DctP subunit [Burkholderia sp. CCGE1003] Length = 339 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 182/258 (70%), Positives = 217/258 (84%), Gaps = 1/258 (0%) Query: 1 MLSQVRAGAIDFFTISPEVLGTLVSAGQISGVGFAFKDYNQVWAAMDGDLGAYVRKQIAA 60 MLSQVR+GAID+FT+SP +LGTLV A QI+GVGFAFKDY+QVW A+DG LGA VR+QIA Sbjct: 83 MLSQVRSGAIDYFTLSPLILGTLVPAAQITGVGFAFKDYDQVWGALDGALGARVREQIA- 141 Query: 61 TTSLFAFERCWDNGYRQVTTSTRPITRPEDFKGMKLRVPPSPLWTSMFRAFDAAPASINF 120 TS+FAFE+ WDNGYRQ TTS R I P+D KG++LRVP SP+WTSMF++ A+PASINF Sbjct: 142 KTSVFAFEKIWDNGYRQTTTSNRSIHVPDDLKGIRLRVPMSPIWTSMFQSLGASPASINF 201 Query: 121 AEVYSALQTKIVEGQENPMAIISTAKLYEVQKYCSMTNHMWDGFWFLANKKSFERLPKDL 180 +EVYS+LQT++VEGQENP+A I+ AKLYEVQKYCS+TNHMWDGFWFLANK+SFERLPKDL Sbjct: 202 SEVYSSLQTRVVEGQENPLATITAAKLYEVQKYCSLTNHMWDGFWFLANKQSFERLPKDL 261 Query: 181 QEIVTRNVNEAGIKQRADVKALNDSLATEMKGKGLAFNDTDNEAFRAKLRSAGFYAEWHK 240 Q IV +N+A +++RADV LN SL E+K KGL FND D AFR +L + GFYA+WHK Sbjct: 262 QVIVRNAINDAAVQERADVAKLNASLMPELKSKGLQFNDVDMNAFRKQLTATGFYADWHK 321 Query: 241 KFGPEAWALLEKYTGKLA 258 KFG +AW LEKYTGKLA Sbjct: 322 KFGDDAWTALEKYTGKLA 339 >ref|YP_486299.1| TRAP dicarboxylate transporter, DctP subunit [Rhodopseudomonas palustris HaA2] gb|ABD07388.1| TRAP dicarboxylate transporter DctP subunit [Rhodopseudomonas palustris HaA2] Length = 339 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 173/258 (67%), Positives = 209/258 (81%), Gaps = 1/258 (0%) Query: 1 MLSQVRAGAIDFFTISPEVLGTLVSAGQISGVGFAFKDYNQVWAAMDGDLGAYVRKQIAA 60 MLSQ+R+G ++FFT+S +L TLV A I+G+GFAF DY+ VW AMDG+LG YVR +I Sbjct: 83 MLSQIRSGGVEFFTLSGLILSTLVPAASINGIGFAFPDYDTVWKAMDGELGGYVRGEIG- 141 Query: 61 TTSLFAFERCWDNGYRQVTTSTRPITRPEDFKGMKLRVPPSPLWTSMFRAFDAAPASINF 120 L ++ WDNG+RQ TTSTRPIT P+DFKG+K+RVP SPLWTSMF+AFDA+PASINF Sbjct: 142 KAGLVVMDKIWDNGFRQTTTSTRPITGPDDFKGLKIRVPVSPLWTSMFKAFDASPASINF 201 Query: 121 AEVYSALQTKIVEGQENPMAIISTAKLYEVQKYCSMTNHMWDGFWFLANKKSFERLPKDL 180 +EVYSALQTK+VEGQENP+AIISTAKLYEVQKYCS+TNHMWDGFWFLAN++++ERLP DL Sbjct: 202 SEVYSALQTKVVEGQENPLAIISTAKLYEVQKYCSLTNHMWDGFWFLANRRAWERLPADL 261 Query: 181 QEIVTRNVNEAGIKQRADVKALNDSLATEMKGKGLAFNDTDNEAFRAKLRSAGFYAEWHK 240 ++IV RN+N AG+ QRADV LN L E+ KGL FN FR KLR+AGFYAEW Sbjct: 262 RDIVARNINAAGVNQRADVAKLNAGLKDELATKGLTFNQPTIGPFRDKLRAAGFYAEWKG 321 Query: 241 KFGPEAWALLEKYTGKLA 258 K+G +AW+LLEK GKLA Sbjct: 322 KYGEQAWSLLEKSVGKLA 339