BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0005.p         (101 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777204.1| TRAP-type C4-dicarboxylate transport system ...   117   4e-25
ref|NP_771151.1| ABC transporter substrate-binding protein [Brad...   108   2e-22
ref|YP_486299.1| TRAP dicarboxylate transporter, DctP subunit [R...   107   7e-22
ref|YP_999526.1| TRAP dicarboxylate transporter subunit DctP [Ve...   106   1e-21
ref|YP_569852.1| TRAP dicarboxylate transporter subunit DctP [Rh...   105   2e-21

>ref|YP_003777204.1| TRAP-type C4-dicarboxylate transport system periplasmic protein
           [Herbaspirillum seropedicae SmR1]
 gb|ADJ65296.1| TRAP-type C4-dicarboxylate transport system, periplasmic component
           protein [Herbaspirillum seropedicae SmR1]
          Length = 344

 Score =  117 bits (294), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 54/63 (85%), Positives = 59/63 (93%)

Query: 1   MKLRVPPSPLATSLFRAFDAAPTSINFAEVYSALQTKIAEGQENPLAVISTVKFYEVQKY 60
           MKLRVPPSPL TS+F+AFDAAPTSINFAEVYSALQTKI EGQENP+A+IST K YEVQKY
Sbjct: 180 MKLRVPPSPLWTSMFKAFDAAPTSINFAEVYSALQTKIVEGQENPMAIISTAKLYEVQKY 239

Query: 61  CSM 63
           CS+
Sbjct: 240 CSI 242


>ref|NP_771151.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum
           USDA 110]
 dbj|BAC49776.1| blr4511 [Bradyrhizobium japonicum USDA 110]
          Length = 339

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/62 (80%), Positives = 56/62 (90%)

Query: 2   KLRVPPSPLATSLFRAFDAAPTSINFAEVYSALQTKIAEGQENPLAVISTVKFYEVQKYC 61
           K+RVP SPL TS+F+AFDAAP SINF+EVYSALQTKI EGQENPLA+IST K YEVQKYC
Sbjct: 176 KIRVPVSPLWTSMFKAFDAAPASINFSEVYSALQTKIVEGQENPLAIISTAKLYEVQKYC 235

Query: 62  SM 63
           S+
Sbjct: 236 SL 237


>ref|YP_486299.1| TRAP dicarboxylate transporter, DctP subunit [Rhodopseudomonas
           palustris HaA2]
 gb|ABD07388.1| TRAP dicarboxylate transporter DctP subunit [Rhodopseudomonas
           palustris HaA2]
          Length = 339

 Score =  107 bits (266), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 48/63 (76%), Positives = 57/63 (90%)

Query: 1   MKLRVPPSPLATSLFRAFDAAPTSINFAEVYSALQTKIAEGQENPLAVISTVKFYEVQKY 60
           +K+RVP SPL TS+F+AFDA+P SINF+EVYSALQTK+ EGQENPLA+IST K YEVQKY
Sbjct: 175 LKIRVPVSPLWTSMFKAFDASPASINFSEVYSALQTKVVEGQENPLAIISTAKLYEVQKY 234

Query: 61  CSM 63
           CS+
Sbjct: 235 CSL 237


>ref|YP_999526.1| TRAP dicarboxylate transporter subunit DctP [Verminephrobacter
           eiseniae EF01-2]
 gb|ABM60508.1| TRAP dicarboxylate transporter, DctP subunit [Verminephrobacter
           eiseniae EF01-2]
          Length = 337

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/62 (77%), Positives = 55/62 (88%)

Query: 2   KLRVPPSPLATSLFRAFDAAPTSINFAEVYSALQTKIAEGQENPLAVISTVKFYEVQKYC 61
           K+RVP SP+ TSLF+AFD++P SINFAEVYSALQTK+ +GQENPLAVI T K YEVQKYC
Sbjct: 174 KIRVPVSPMWTSLFKAFDSSPASINFAEVYSALQTKVVDGQENPLAVIETAKLYEVQKYC 233

Query: 62  SM 63
           SM
Sbjct: 234 SM 235


>ref|YP_569852.1| TRAP dicarboxylate transporter subunit DctP [Rhodopseudomonas
           palustris BisB5]
 gb|ABE39951.1| TRAP dicarboxylate transporter, DctP subunit [Rhodopseudomonas
           palustris BisB5]
          Length = 339

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/62 (77%), Positives = 56/62 (90%)

Query: 2   KLRVPPSPLATSLFRAFDAAPTSINFAEVYSALQTKIAEGQENPLAVISTVKFYEVQKYC 61
           K+RVP SPL TS+F+AFDA+P SINF+EVYSALQTK+ EGQENPLA+IST K YEVQKYC
Sbjct: 176 KIRVPVSPLWTSMFKAFDASPASINFSEVYSALQTKVVEGQENPLALISTAKLYEVQKYC 235

Query: 62  SM 63
           S+
Sbjct: 236 SL 237