BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0023.0003.p (156 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777203.1| TRAP-type C4-dicarboxylate transport system ... 136 1e-30 ref|NP_768811.1| ABC transporter permease [Bradyrhizobium japoni... 116 1e-24 ref|YP_002945194.1| TRAP dicarboxylate transporter subunit DctM ... 112 2e-23 ref|YP_001632982.1| putative TrapT dctQ-M fusion permease, dicar... 112 2e-23 ref|YP_003450537.1| TRAP C4-dicarboxylate transport system perme... 109 1e-22 >ref|YP_003777203.1| TRAP-type C4-dicarboxylate transport system dctQ-M fusion permease large permease [Herbaspirillum seropedicae SmR1] gb|ADJ65295.1| TRAP-type C4-dicarboxylate transport system, dctQ-M fusion permease, large permease component protein [Herbaspirillum seropedicae SmR1] Length = 627 Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 72/103 (69%), Positives = 86/103 (83%), Gaps = 3/103 (2%) Query: 1 MKHLDFRRIYPMLVEAATLSGAILLIIGMATSMAWALTQSGFSAKLVSLMQGVPGGGFGF 60 M+HL F+R+YPML+E+A LSGAILLIIGMAT+MAWALTQSGFSAKLV+LMQGVPGGG GF Sbjct: 462 MRHLSFKRLYPMLIESAALSGAILLIIGMATAMAWALTQSGFSAKLVALMQGVPGGGVGF 521 Query: 61 LLITIVIFIVLGSILEGXIVIFIVLGSI--PIAFAFGTATMAY 101 LLITIVIFIVLGS+LEG I ++ G + P+A + G + Y Sbjct: 522 LLITIVIFIVLGSLLEGIPAI-VLFGPLLFPVARSLGVHDVHY 563 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 55/62 (88%), Positives = 58/62 (93%) Query: 84 VLGSIPIAFAFGTATMAYLTIATGAPMMIVVSRMDEGMSSLILLSVPLFVLLGSLLEISG 143 V G IPIAFAFGTATMAYL +AT AP+MIVVSRMDEGMSSLILLSVPLFVLLGSLLE+SG Sbjct: 217 VAGGIPIAFAFGTATMAYLALATTAPLMIVVSRMDEGMSSLILLSVPLFVLLGSLLEMSG 276 Query: 144 LA 145 LA Sbjct: 277 LA 278 >ref|NP_768811.1| ABC transporter permease [Bradyrhizobium japonicum USDA 110] dbj|BAC47436.1| blr2171 [Bradyrhizobium japonicum USDA 110] Length = 630 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/171 (47%), Positives = 105/171 (61%), Gaps = 24/171 (14%) Query: 2 KHLDFRRIYPMLVEAATLSGAILLIIGMATSMAWALTQSGFSAKLVSLMQGVPGGGFGFL 61 + D+RRIYPMLVE A+LSGAILLIIG AT MAWALTQSGFSA L M +PGG FL Sbjct: 466 RQFDWRRIYPMLVETASLSGAILLIIGAATGMAWALTQSGFSASLAKFMTSLPGGVPVFL 525 Query: 62 LITIVIFIVLGSILEGXIVIFIVLGSI--PIAFAFGTATMAY---LTIATG----AP--- 109 +TIV F++LGS+LEG I ++ G + PIA G + Y + +A G AP Sbjct: 526 AVTIVTFVILGSVLEGIPAI-VLFGPLLFPIARQVGVHDVHYAMVVVLAMGIGLFAPPFG 584 Query: 110 ----MMIVVSRM--DEGMSSLILLSVPLFVLLGSLLEISGLAVPWISIGFL 154 +SR+ DEGM ++ + L L+G+L+ AVPW+SIGFL Sbjct: 585 VGYYAACAISRINPDEGMKPIVGYMIAL--LIGTLIVA---AVPWLSIGFL 630 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 37/68 (54%), Positives = 52/68 (76%) Query: 83 IVLGSIPIAFAFGTATMAYLTIATGAPMMIVVSRMDEGMSSLILLSVPLFVLLGSLLEIS 142 +V ++PIAFAFG AT+ YL + T P ++++ RMDEGMS LILL+VPLFV LG L+E++ Sbjct: 222 MVFAAVPIAFAFGLATVGYLALTTSTPDVVMIGRMDEGMSHLILLAVPLFVFLGLLIEMT 281 Query: 143 GLAVPWIS 150 G+A +S Sbjct: 282 GMARAMVS 289 >ref|YP_002945194.1| TRAP dicarboxylate transporter subunit DctM [Variovorax paradoxus S110] gb|ACS19928.1| TRAP dicarboxylate transporter, DctM subunit [Variovorax paradoxus S110] Length = 629 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 76/171 (44%), Positives = 106/171 (61%), Gaps = 24/171 (14%) Query: 2 KHLDFRRIYPMLVEAATLSGAILLIIGMATSMAWALTQSGFSAKLVSLMQGVPGGGFGFL 61 + D++RIYPMLV A+LSG+IL IIG AT MAWALTQSGFS+ L M+ +PGG F+ Sbjct: 465 RQFDWKRIYPMLVSTASLSGSILFIIGAATGMAWALTQSGFSSALADTMKALPGGAITFM 524 Query: 62 LITIVIFIVLGSILEGXIVIFIVLGSI--PIAFAFGTATMAY---LTIATG----AP--- 109 +++V FI+LGS+LEG I ++LG + PIA G + Y +T+A G AP Sbjct: 525 AVSVVAFIILGSVLEGIPAI-VLLGPLLFPIARQVGIHEVHYAMVVTLAMGIGLFAPPFG 583 Query: 110 ----MMIVVSRM--DEGMSSLILLSVPLFVLLGSLLEISGLAVPWISIGFL 154 +SR+ +EGM ++ V LF+ G+ ++ A+PWISIGFL Sbjct: 584 VGYYAACAISRIHPNEGMKPIVGYMVALFI--GT---VAVAAIPWISIGFL 629 >ref|YP_001632982.1| putative TrapT dctQ-M fusion permease, dicarboxylate transport [Bordetella petrii DSM 12804] emb|CAP44715.1| putative TrapT dctQ-M fusion permease, dicarboxylate transport [Bordetella petrii] Length = 631 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 73/173 (42%), Positives = 101/173 (58%), Gaps = 24/173 (13%) Query: 2 KHLDFRRIYPMLVEAATLSGAILLIIGMATSMAWALTQSGFSAKLVSLMQGVPGGGFGFL 61 + D +R+YP+L++ ATLSGAILLIIG AT MAWALTQSGFSA L LM +PGG F F Sbjct: 465 RKFDVKRLYPILIDTATLSGAILLIIGTATGMAWALTQSGFSADLADLMGSLPGGAFTFF 524 Query: 62 LITIVIFIVLGSILEGXIVIFIVLGSI--PIAFAFGTATMAYLTIA-------------- 105 ++IV FIVLGS+LEG I ++LG + PIA G + Y +A Sbjct: 525 CVSIVTFIVLGSVLEG-IPAVVLLGPLLFPIAEELGINDVHYAMVAILAMGIGLFAPPFG 583 Query: 106 TGAPMMIVVSRM--DEGMSSLILLSVPLFVLLGSLLEISGLAVPWISIGFLEH 156 G + R+ D+G+ ++ +F+ LL ++ A+PW+S GFL+ Sbjct: 584 VGYYAACAIGRVAPDKGIKPIVGYMCSIFI---GLLLVA--AIPWLSTGFLDK 631 Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 36/58 (62%), Positives = 49/58 (84%) Query: 88 IPIAFAFGTATMAYLTIATGAPMMIVVSRMDEGMSSLILLSVPLFVLLGSLLEISGLA 145 +PIAF+FG AT AYL+ +T P+M++V RMDEGMS LILL+VPLFV LG L++++G+A Sbjct: 226 VPIAFSFGIATYAYLSFSTYVPVMVLVGRMDEGMSHLILLAVPLFVFLGLLIDMTGMA 283 >ref|YP_003450537.1| TRAP C4-dicarboxylate transport system permease DctM subunit [Azospirillum sp. B510] dbj|BAI73993.1| TRAP C4-dicarboxylate transport system permease DctM subunit [Azospirillum sp. B510] Length = 630 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 78/175 (44%), Positives = 99/175 (56%), Gaps = 32/175 (18%) Query: 2 KHLDFRRIYPMLVEAATLSGAILLIIGMATSMAWALTQSGFSAKLVSLMQGVPGGGFGFL 61 + D+RRIYPMLVE A LSGAILLIIG AT MAWALTQSGFS L ++M+ +PGG F+ Sbjct: 465 RQFDWRRIYPMLVETAALSGAILLIIGAATGMAWALTQSGFSNTLATVMRELPGGVPVFI 524 Query: 62 LITIVIFIVLGSILEGXIVIFIVLGSI--PIAFAFGTATMAYLTI--------------A 105 ++IV FI+LGS+LEG I ++ G + PIA G + Y I Sbjct: 525 AVSIVAFIILGSVLEGIPAI-VLFGPLLFPIAREIGVHEVHYAMIVILAMGIGLFAPPFG 583 Query: 106 TGAPMMIVVSRM--DEGMSS----LILLSVPLFVLLGSLLEISGLAVPWISIGFL 154 G +SR+ DEGM L L+V L ++ AVPW+SIGFL Sbjct: 584 VGYYAACAISRISPDEGMKPILGYLAALAVGLIIV---------AAVPWVSIGFL 629 Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 37/58 (63%), Positives = 48/58 (82%) Query: 88 IPIAFAFGTATMAYLTIATGAPMMIVVSRMDEGMSSLILLSVPLFVLLGSLLEISGLA 145 +PIAF+FG AT YL++AT P +++V RMDEGMS LILLSVPLFV LG L+E++G+A Sbjct: 226 LPIAFSFGLATFGYLSLATSTPAIVMVGRMDEGMSHLILLSVPLFVFLGQLIEMTGMA 283