BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0042.p (285 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_252202.1| ABC transporter permease [Pseudomonas aeruginos... 371 e-101 ref|YP_673379.1| binding-protein-dependent transport systems inn... 264 1e-68 ref|YP_004543146.1| ABC-type transporter, integral membrane subu... 176 3e-42 ref|YP_118967.1| putative transporter [Nocardia farcinica IFM 10... 174 1e-41 ref|YP_003319755.1| binding-protein-dependent transport systems ... 171 2e-40 >ref|NP_252202.1| ABC transporter permease [Pseudomonas aeruginosa PAO1] gb|AAG06900.1|AE004771_9 probable permease of ABC transporter [Pseudomonas aeruginosa PAO1] Length = 258 Score = 371 bits (952), Expect = e-101, Method: Compositional matrix adjust. Identities = 181/237 (76%), Positives = 206/237 (86%) Query: 49 WQWGPGWLGMPEYILPNLSHVLRESVVMWNNNDLLTHFGITAMEVVFGFLFGALLGLAVG 108 WQWGPG LGMPE++LP LS V E V MW+ LL H IT++E+V GF GALLG+++G Sbjct: 22 WQWGPGLLGMPEFVLPGLSRVAAEGVAMWHGAGLLEHTAITSLEIVVGFALGALLGVSIG 81 Query: 109 VALGLSPRAEAMLSPYILALQIAPKVAFAPLFVMWLGYTIYPKIIVAVLIVFFPIMINVL 168 VALGLSP EAMLSPYILALQIAPKVAFAPLFVMWLGYT+YPKI++AVLIVFFP+MINVL Sbjct: 82 VALGLSPTTEAMLSPYILALQIAPKVAFAPLFVMWLGYTVYPKILIAVLIVFFPVMINVL 141 Query: 169 SAVRTVDPDMVNLVRTLNAGRWQIFHLVEFRSALPALFSGLRIASTLSVIGVTVGELVGG 228 SA+RTVDPDM+NLVR ++A RWQIF LVEF SA+ ALFSGLRIASTL+VIGVTVGELVGG Sbjct: 142 SAIRTVDPDMINLVRAMSASRWQIFRLVEFPSAMAALFSGLRIASTLAVIGVTVGELVGG 201 Query: 229 NQGLGYLLVDGEGQGNTAAVFVAICALTLIGIVTYGAVVWAERRVLHYLPKVHTSTV 285 N+GLG+LLVD EGQGNTA VFVAI LTLIG++ YGAVVWAE+RVLHYLPK + TV Sbjct: 202 NKGLGFLLVDAEGQGNTAGVFVAIVMLTLIGVLAYGAVVWAEKRVLHYLPKANLGTV 258 >ref|YP_673379.1| binding-protein-dependent transport systems inner membrane component [Mesorhizobium sp. BNC1] gb|ABG62214.1| binding-protein-dependent transport systems inner membrane component [Chelativorans sp. BNC1] Length = 270 Score = 264 bits (674), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 137/245 (55%), Positives = 174/245 (71%) Query: 39 LVVLVLFLASWQWGPGWLGMPEYILPNLSHVLRESVVMWNNNDLLTHFGITAMEVVFGFL 98 L++L L W++ P LG+P +I+P +S + E M+ +L+ + TA+ V GF Sbjct: 26 LLILSAVLLIWEFLPPALGVPRFIIPTISDMAGELGRMYRRENLIPNILSTALYTVLGFA 85 Query: 99 FGALLGLAVGVALGLSPRAEAMLSPYILALQIAPKVAFAPLFVMWLGYTIYPKIIVAVLI 158 G++LG +G LGLS E +LSPYILALQIAPKVAFAPLF+MW GY PK++V VLI Sbjct: 86 IGSMLGAIIGYLLGLSRFWEKVLSPYILALQIAPKVAFAPLFIMWFGYNATPKLLVTVLI 145 Query: 159 VFFPIMINVLSAVRTVDPDMVNLVRTLNAGRWQIFHLVEFRSALPALFSGLRIASTLSVI 218 VFFP+++NVL+A++TVD DMVNL R N RWQIF V+F S LP L +GLRI+STL+VI Sbjct: 146 VFFPVLVNVLAAMKTVDRDMVNLARAYNLSRWQIFLKVQFPSTLPNLLAGLRISSTLAVI 205 Query: 219 GVTVGELVGGNQGLGYLLVDGEGQGNTAAVFVAICALTLIGIVTYGAVVWAERRVLHYLP 278 GVTVGELVGGN GLG+L+ G GQ N A VF AI LT+IGI Y + WAE R+LHY+P Sbjct: 206 GVTVGELVGGNTGLGFLIAYGGGQANAAMVFNAIILLTIIGIALYSVLAWAEERLLHYIP 265 Query: 279 KVHTS 283 K H S Sbjct: 266 KSHIS 270 >ref|YP_004543146.1| ABC-type transporter, integral membrane subunit [Isoptericola variabilis 225] gb|AEG45252.1| ABC-type transporter, integral membrane subunit [Isoptericola variabilis 225] Length = 295 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 102/255 (40%), Positives = 150/255 (58%), Gaps = 7/255 (2%) Query: 21 AKVKRPLLNERARTVCGS---LVVLVLFLASWQWGPGWLGM-PEYILPNLSHVLRESVVM 76 A+ PLL A V S L+VLV A W W W + P Y++P V V Sbjct: 26 ARTSTPLLTRAANLVAVSWRPLLVLVALFAVW-WFVAWRELVPAYLIPAPGAVWETMVDD 84 Query: 77 WNNNDLLTHFGITAMEVVFGFLFGALLGLAVGVALGLSPRAEAMLSPYILALQIAPKVAF 136 W LL H +T +E + GFL ++G+A V L S AE L P IL Q+ PK+A Sbjct: 85 WAM--LLEHTWVTTLETIIGFLLATVIGVATAVVLVYSKTAEKALYPLILFAQVIPKIAI 142 Query: 137 APLFVMWLGYTIYPKIIVAVLIVFFPIMINVLSAVRTVDPDMVNLVRTLNAGRWQIFHLV 196 AP+ V+W G+ + PKI++AVLI FFP++++ ++ +R+VDP+++ L T+ A RW+ F + Sbjct: 143 APILVVWFGFGLTPKIVLAVLIAFFPVVVSAVAGLRSVDPELLELSATMGASRWKTFRKI 202 Query: 197 EFRSALPALFSGLRIASTLSVIGVTVGELVGGNQGLGYLLVDGEGQGNTAAVFVAICALT 256 F ALP L SGL++A TL+V+G VGE VG ++GLGY+L+ G N +F + ++ Sbjct: 203 RFPGALPHLMSGLKVAVTLAVVGAVVGEFVGADRGLGYVLLLASGNLNAPLLFADLILMS 262 Query: 257 LIGIVTYGAVVWAER 271 LIG+V + V +ER Sbjct: 263 LIGVVLFVVVELSER 277 >ref|YP_118967.1| putative transporter [Nocardia farcinica IFM 10152] dbj|BAD57603.1| putative transporter [Nocardia farcinica IFM 10152] Length = 290 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 91/211 (43%), Positives = 139/211 (65%), Gaps = 2/211 (0%) Query: 61 YILPNLSHVLRESVVMWNNNDLLTHFGITAMEVVFGFLFGALLGLAVGVALGLSPRAEAM 120 YILP+ + R +V N+ LL + +T E V GF+ AL+G AV + + S E Sbjct: 63 YILPSPAETWRTTVD--NSAYLLENTWVTTYETVVGFVIAALIGEAVALVMIYSRSVERT 120 Query: 121 LSPYILALQIAPKVAFAPLFVMWLGYTIYPKIIVAVLIVFFPIMINVLSAVRTVDPDMVN 180 + P IL Q+ PK+A APLF++WLG+ PKI+VAVL+ FFPI+I+ ++ +R+VDP+++ Sbjct: 121 MYPLILFAQVIPKIAIAPLFIVWLGFGTSPKILVAVLMAFFPIVISGMAGLRSVDPEILE 180 Query: 181 LVRTLNAGRWQIFHLVEFRSALPALFSGLRIASTLSVIGVTVGELVGGNQGLGYLLVDGE 240 L T+ AG W+ F V F ++LP L SGL+IA+TL+V G VGE VG N+GLGY+++ Sbjct: 181 LTSTMGAGNWKTFVKVRFPASLPQLMSGLKIAATLAVTGAVVGEFVGANEGLGYVILQAN 240 Query: 241 GQGNTAAVFVAICALTLIGIVTYGAVVWAER 271 G +TA +F A+ ++L+GI+ + + AE+ Sbjct: 241 GNIDTAMLFAALIIMSLLGIILFAIIEIAEQ 271 >ref|YP_003319755.1| binding-protein-dependent transport systems inner membrane component [Sphaerobacter thermophilus DSM 20745] gb|ACZ38933.1| binding-protein-dependent transport systems inner membrane component [Sphaerobacter thermophilus DSM 20745] Length = 279 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 97/272 (35%), Positives = 149/272 (54%), Gaps = 1/272 (0%) Query: 14 APETGTIAKVKRPLLNERARTVCGSLVVLVLFLASWQWGPGWLGMPEYILPNLSHVLRES 73 A + A ++R +L R + + VL +A W+ L +P YILP + + R Sbjct: 7 AEQPRRAASLRRYMLRNRPEILLVP-TIFVLIVAVWELLVKLLAVPIYILPPPTEIWRAF 65 Query: 74 VVMWNNNDLLTHFGITAMEVVFGFLFGALLGLAVGVALGLSPRAEAMLSPYILALQIAPK 133 + L+ H +T EV+ GF G++ GL VGV + E + PY++A Q PK Sbjct: 66 RDGLGSGSLVEHTWVTLQEVLLGFAVGSVAGLVVGVIVTRFRLVERTVYPYVVAFQTVPK 125 Query: 134 VAFAPLFVMWLGYTIYPKIIVAVLIVFFPIMINVLSAVRTVDPDMVNLVRTLNAGRWQIF 193 VA APL V W G+ + K++ LI FFP+++NV++ +++VD D ++L+R++NA WQIF Sbjct: 126 VALAPLIVTWFGFGMTSKVVTTALIAFFPLLVNVIAGLQSVDQDRIDLLRSVNASEWQIF 185 Query: 194 HLVEFRSALPALFSGLRIASTLSVIGVTVGELVGGNQGLGYLLVDGEGQGNTAAVFVAIC 253 +V F SALP +F+GL +A SVIG V E VG GLGYL+ N + F + Sbjct: 186 RMVRFPSALPFIFAGLDVAIVFSVIGAIVSEFVGARAGLGYLIQVNNYNLNVSGTFAVLV 245 Query: 254 ALTLIGIVTYGAVVWAERRVLHYLPKVHTSTV 285 L+++G+ + V W RRV+ + S V Sbjct: 246 VLSVMGLTLHLVVQWVNRRVVFWQRDDRGSVV 277