BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0018.p (305 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_252190.1| hypothetical protein PA3500 [Pseudomonas aerugi... 447 e-123 gb|AAT51469.1| PA3500 [synthetic construct] 447 e-123 ref|YP_003280645.1| Rieske iron-sulfur protein [Comamonas testos... 445 e-123 ref|YP_004155878.1| rieske (2fe-2S) iron-sulfur domain [Variovor... 432 e-119 ref|YP_002945044.1| Rieske (2Fe-2S) domain-containing protein [V... 427 e-118 >ref|NP_252190.1| hypothetical protein PA3500 [Pseudomonas aeruginosa PAO1] gb|AAG06888.1|AE004770_13 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] Length = 339 Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust. Identities = 202/276 (73%), Positives = 237/276 (85%) Query: 22 GWPLSMGIAMGDRIACGYHGVQVRFDGVVMSVPGSPGCKLEGAKATRSYHVTEACGAIFL 81 G PLS G+ +GDR+ C YHGV+VR DGV VPGSPGCKLEG++ATR +H+TEA GA++L Sbjct: 63 GAPLSRGVNLGDRLQCPYHGVEVRCDGVTARVPGSPGCKLEGSQATRFFHITEAAGAVWL 122 Query: 82 FNAGSDIAEPPPLRLPEELTSPEYSNFLCYTEWKGDYRYVLDNVMDPMHGTFLHKQSHSM 141 +N+ ++ E PPL LPE+LT PE+S+FLCYTEW+GDYRYVLDNVMDPMHGT+LHKQSHSM Sbjct: 123 YNSAGNVEEAPPLVLPEQLTDPEFSHFLCYTEWRGDYRYVLDNVMDPMHGTYLHKQSHSM 182 Query: 142 AEGDNTASFGIRETDIGFIFEKEGQRDVNFDWTEWADTDLHWMRLAIPYPKTGGPGGSFY 201 +EG++ A F R+TD GFIFEK+GQR VNFDWTEWADT +HWMRL IPYPKTGGPGG+F+ Sbjct: 183 SEGESQARFVTRDTDTGFIFEKDGQRGVNFDWTEWADTGMHWMRLEIPYPKTGGPGGNFH 242 Query: 202 IVGSYTPIVDNIAAVFHWRCRKLTGWQKDTWRFLYRNRLEARHWNVLEQDRAVLEVMEPD 261 IVGSYTPI ++ AVFHWRCR LTGWQ+DTWRFLYRNRLEARHW VLEQDR +LE MEPD Sbjct: 243 IVGSYTPIARDLCAVFHWRCRPLTGWQRDTWRFLYRNRLEARHWAVLEQDREMLEFMEPD 302 Query: 262 ANQREMLYQHDMGIVRLRRHMRNLAKEQLAKEAAAQ 297 ANQRE LYQHD+G+VRLRRH++NLAK QL A Q Sbjct: 303 ANQRENLYQHDLGLVRLRRHLKNLAKAQLELIEARQ 338 >gb|AAT51469.1| PA3500 [synthetic construct] Length = 340 Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust. Identities = 202/276 (73%), Positives = 237/276 (85%) Query: 22 GWPLSMGIAMGDRIACGYHGVQVRFDGVVMSVPGSPGCKLEGAKATRSYHVTEACGAIFL 81 G PLS G+ +GDR+ C YHGV+VR DGV VPGSPGCKLEG++ATR +H+TEA GA++L Sbjct: 63 GAPLSRGVNLGDRLQCPYHGVEVRCDGVTARVPGSPGCKLEGSQATRFFHITEAAGAVWL 122 Query: 82 FNAGSDIAEPPPLRLPEELTSPEYSNFLCYTEWKGDYRYVLDNVMDPMHGTFLHKQSHSM 141 +N+ ++ E PPL LPE+LT PE+S+FLCYTEW+GDYRYVLDNVMDPMHGT+LHKQSHSM Sbjct: 123 YNSAGNVEEAPPLVLPEQLTDPEFSHFLCYTEWRGDYRYVLDNVMDPMHGTYLHKQSHSM 182 Query: 142 AEGDNTASFGIRETDIGFIFEKEGQRDVNFDWTEWADTDLHWMRLAIPYPKTGGPGGSFY 201 +EG++ A F R+TD GFIFEK+GQR VNFDWTEWADT +HWMRL IPYPKTGGPGG+F+ Sbjct: 183 SEGESQARFVTRDTDTGFIFEKDGQRGVNFDWTEWADTGMHWMRLEIPYPKTGGPGGNFH 242 Query: 202 IVGSYTPIVDNIAAVFHWRCRKLTGWQKDTWRFLYRNRLEARHWNVLEQDRAVLEVMEPD 261 IVGSYTPI ++ AVFHWRCR LTGWQ+DTWRFLYRNRLEARHW VLEQDR +LE MEPD Sbjct: 243 IVGSYTPIARDLCAVFHWRCRPLTGWQRDTWRFLYRNRLEARHWAVLEQDREMLEFMEPD 302 Query: 262 ANQREMLYQHDMGIVRLRRHMRNLAKEQLAKEAAAQ 297 ANQRE LYQHD+G+VRLRRH++NLAK QL A Q Sbjct: 303 ANQRENLYQHDLGLVRLRRHLKNLAKAQLELIEARQ 338 >ref|YP_003280645.1| Rieske iron-sulfur protein [Comamonas testosteroni CNB-2] gb|ACY35349.1| Rieske iron-sulfur protein [Comamonas testosteroni CNB-2] Length = 347 Score = 445 bits (1144), Expect = e-123, Method: Compositional matrix adjust. Identities = 205/277 (74%), Positives = 236/277 (85%), Gaps = 2/277 (0%) Query: 22 GWPLSMGIAMGDRIACGYHGVQVRFDGVVMSVPGSPGCKLEGAKATRSYHVTEACGAIFL 81 G PLS G+ +GDR++C YHGV+VR DG V VPGSPGCKLEG++ T +HV EA GA+FL Sbjct: 67 GAPLSQGVILGDRLSCPYHGVEVRCDGTVTRVPGSPGCKLEGSRPTFHFHVKEAAGAVFL 126 Query: 82 FNAGSDIAEPPPLRLPEELTS-PEYSNFLCYTEWKGDYRYVLDNVMDPMHGTFLHKQSHS 140 +N+ + EPPPL LPE+LT+ EYS+FLCYTEWKGDYRYVLDNVMDPMHGTFLHKQSHS Sbjct: 127 YNSSVPVDEPPPLVLPEQLTNDEEYSHFLCYTEWKGDYRYVLDNVMDPMHGTFLHKQSHS 186 Query: 141 MAEGDNTASFGIRETDIGFIFEKEGQRDVNFDWTEWADTDLHWMRLAIPYPKTGGPGGSF 200 MAEGD A FG+R TD GF+FEKEGQR+VNFDWTEWADT +HWMRL IPYPKTGGPGG+F Sbjct: 187 MAEGDAEAKFGVRSTDTGFVFEKEGQRNVNFDWTEWADTGIHWMRLEIPYPKTGGPGGNF 246 Query: 201 YIVGSYTPIVDNIAAVFHWRCRKL-TGWQKDTWRFLYRNRLEARHWNVLEQDRAVLEVME 259 I GSYTPI N+AAVFHWRCRKL GW++DTWRFLY+NRLEARHW+VLEQDR +LE ME Sbjct: 247 IICGSYTPIASNMAAVFHWRCRKLPKGWERDTWRFLYQNRLEARHWHVLEQDRTMLEDME 306 Query: 260 PDANQREMLYQHDMGIVRLRRHMRNLAKEQLAKEAAA 296 PDANQ E LYQHD+GIVRLRRH++NLA+EQ+ AA Sbjct: 307 PDANQHENLYQHDLGIVRLRRHLKNLAQEQIDARQAA 343 >ref|YP_004155878.1| rieske (2fe-2S) iron-sulfur domain [Variovorax paradoxus EPS] gb|ADU37767.1| Rieske (2Fe-2S) iron-sulfur domain [Variovorax paradoxus EPS] Length = 348 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 198/271 (73%), Positives = 232/271 (85%), Gaps = 2/271 (0%) Query: 22 GWPLSMGIAMGDRIACGYHGVQVRFDGVVMSVPGSPGCKLEGAKATRSYHVTEACGAIFL 81 G PLS G+ +GDR++C YHGV+VR DGVV VPGSPGCKLEG++ATR +HV E GA+FL Sbjct: 69 GAPLSQGVILGDRLSCPYHGVEVRHDGVVTRVPGSPGCKLEGSQATRHFHVQERAGAVFL 128 Query: 82 FNAGSDIAEPPPLRLPEELTS-PEYSNFLCYTEWKGDYRYVLDNVMDPMHGTFLHKQSHS 140 +N+ + PP L LPE+LT EYS+FLCYTEWKGDYRYVLDNVMDPMHGT+LHKQSHS Sbjct: 129 YNSKEPVDIPPSLVLPEQLTDEAEYSSFLCYTEWKGDYRYVLDNVMDPMHGTYLHKQSHS 188 Query: 141 MAEGDNTASFGIRETDIGFIFEKEGQRDVNFDWTEWADTDLHWMRLAIPYPKTGGPGGSF 200 MAEGD++A FGIR+TDIGF+FEKEGQR+VNFDWTEWADT +HWMRL IPYPKTGGPGG+F Sbjct: 189 MAEGDSSAKFGIRQTDIGFVFEKEGQRNVNFDWTEWADTGIHWMRLEIPYPKTGGPGGNF 248 Query: 201 YIVGSYTPIVDNIAAVFHWRCRKLT-GWQKDTWRFLYRNRLEARHWNVLEQDRAVLEVME 259 I+G+++P+ D + A F WR RKL GW++DTWRFLY+NRLEARHW+VLEQDR +LE ME Sbjct: 249 IIIGAFSPMADGMTATFFWRVRKLAKGWERDTWRFLYKNRLEARHWHVLEQDRVMLEEME 308 Query: 260 PDANQREMLYQHDMGIVRLRRHMRNLAKEQL 290 PDANQ E LYQHD+GIVRLRRHMRNLA QL Sbjct: 309 PDANQHENLYQHDLGIVRLRRHMRNLAVAQL 339 >ref|YP_002945044.1| Rieske (2Fe-2S) domain-containing protein [Variovorax paradoxus S110] gb|ACS19778.1| Rieske (2Fe-2S) domain protein [Variovorax paradoxus S110] Length = 347 Score = 427 bits (1099), Expect = e-118, Method: Compositional matrix adjust. Identities = 196/265 (73%), Positives = 227/265 (85%), Gaps = 2/265 (0%) Query: 22 GWPLSMGIAMGDRIACGYHGVQVRFDGVVMSVPGSPGCKLEGAKATRSYHVTEACGAIFL 81 G PLS G+ +GDR++C YHGV+VR DGVV VPGSPGCKLEG++ATR +HV E GA+FL Sbjct: 69 GAPLSQGVVLGDRLSCPYHGVEVRHDGVVTRVPGSPGCKLEGSQATRHFHVQERAGAVFL 128 Query: 82 FNAGSDIAEPPPLRLPEELTS-PEYSNFLCYTEWKGDYRYVLDNVMDPMHGTFLHKQSHS 140 +N + PPPL LPE+LT EYS+FLCYTEWKGDYRYVLDNVMDPMHGT+LHKQSHS Sbjct: 129 YNGKEPVDVPPPLVLPEQLTDDAEYSSFLCYTEWKGDYRYVLDNVMDPMHGTYLHKQSHS 188 Query: 141 MAEGDNTASFGIRETDIGFIFEKEGQRDVNFDWTEWADTDLHWMRLAIPYPKTGGPGGSF 200 MAEGD+TA FGIR+TD GF+FEKEGQR+VNFDWTEWADT +HWMRL IPYPKTGGPGG+F Sbjct: 189 MAEGDSTAKFGIRQTDAGFVFEKEGQRNVNFDWTEWADTGIHWMRLEIPYPKTGGPGGNF 248 Query: 201 YIVGSYTPIVDNIAAVFHWRCRKLT-GWQKDTWRFLYRNRLEARHWNVLEQDRAVLEVME 259 I+G+++PIV + A F WR RKL GW++DTWRFLY+NRLEARHW+VLEQDR +LE ME Sbjct: 249 IIIGAFSPIVKGMTATFFWRVRKLPRGWERDTWRFLYKNRLEARHWHVLEQDRVMLEEME 308 Query: 260 PDANQREMLYQHDMGIVRLRRHMRN 284 PDANQ E LYQHD+GIVRLRRHMRN Sbjct: 309 PDANQHENLYQHDLGIVRLRRHMRN 333