BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0017.p         (140 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003280644.1| endoribonuclease L-PSP [Comamonas testostero...   161   3e-38
gb|AAT49568.1| PA3499 [synthetic construct]                           161   3e-38
ref|NP_252189.1| hypothetical protein PA3499 [Pseudomonas aerugi...   161   3e-38
ref|ZP_06594666.1| conserved hypothetical protein [Streptomyces ...    98   4e-19
ref|ZP_06574651.1| predicted protein [Streptomyces ghanaensis AT...    97   7e-19

>ref|YP_003280644.1| endoribonuclease L-PSP [Comamonas testosteroni CNB-2]
 gb|ACY35348.1| Endoribonuclease L-PSP [Comamonas testosteroni CNB-2]
          Length = 130

 Score =  161 bits (408), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 82/130 (63%), Positives = 100/130 (76%), Gaps = 8/130 (6%)

Query: 14  ELAAATWSNCLVIGKEISMSGMTAHPASRNSV-----LSTYEQTLVVLGKVRDLVEAAGG 68
           +L  ATWSN LV+G E+ +SG TAHPASR++      LS Y+QTLVVL K++ L+EAAGG
Sbjct: 3   DLPHATWSNALVVGNEVVLSGQTAHPASRDASEAGTPLSAYDQTLVVLRKIQALLEAAGG 62

Query: 69  TLGSIYKLVIYVKDIADKDEVGRARRDFFTAPQPCPYPCSTLVEVSGLVFPELTVEIDAF 128
            + +I KLV+YV DI+DKD VGRARRDFF +    P+P STLV V  LVFPEL VEIDAF
Sbjct: 63  GVHNITKLVVYVTDISDKDGVGRARRDFFGS---TPWPASTLVAVQALVFPELKVEIDAF 119

Query: 129 ARLDIDLQQA 138
           ARLD+DL+QA
Sbjct: 120 ARLDVDLRQA 129


>gb|AAT49568.1| PA3499 [synthetic construct]
          Length = 145

 Score =  161 bits (407), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 81/140 (57%), Positives = 103/140 (73%), Gaps = 7/140 (5%)

Query: 1   MQTVRHIKTDKVAELAAATWSNCLVIGKEISMSGMTAHPASR-----NSVLSTYEQTLVV 55
           M  VR I+   + +L  A+WSN L++G+E+ MSGMTAHPA+R      + L  + Q LVV
Sbjct: 1   MTAVRRIRAAALPDLPDASWSNALLVGEELVMSGMTAHPATRQAAERGAALDAHAQALVV 60

Query: 56  LGKVRDLVEAAGGTLGSIYKLVIYVKDIADKDEVGRARRDFFTAPQPCPYPCSTLVEVSG 115
           LGKV+ L+EAAGG +G++YKL +YV  IADKD +GRAR++FF       +P STLVEVSG
Sbjct: 61  LGKVKALLEAAGGHVGNLYKLNVYVTRIADKDAIGRARQEFFAG--QGTFPASTLVEVSG 118

Query: 116 LVFPELTVEIDAFARLDIDL 135
           LVFPEL VEIDA+ARLDIDL
Sbjct: 119 LVFPELLVEIDAWARLDIDL 138


>ref|NP_252189.1| hypothetical protein PA3499 [Pseudomonas aeruginosa PAO1]
 pdb|2IG8|A Chain A, Crystal Structure Of A Protein Of Unknown Function Pa3499
           From Pseudomonas Aeruginosa
 pdb|2IG8|B Chain B, Crystal Structure Of A Protein Of Unknown Function Pa3499
           From Pseudomonas Aeruginosa
 pdb|2IG8|C Chain C, Crystal Structure Of A Protein Of Unknown Function Pa3499
           From Pseudomonas Aeruginosa
 gb|AAG06887.1|AE004770_12 hypothetical protein PA3499 [Pseudomonas aeruginosa PAO1]
          Length = 144

 Score =  161 bits (407), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 81/140 (57%), Positives = 103/140 (73%), Gaps = 7/140 (5%)

Query: 1   MQTVRHIKTDKVAELAAATWSNCLVIGKEISMSGMTAHPASR-----NSVLSTYEQTLVV 55
           M  VR I+   + +L  A+WSN L++G+E+ MSGMTAHPA+R      + L  + Q LVV
Sbjct: 1   MTAVRRIRAAALPDLPDASWSNALLVGEELVMSGMTAHPATRQAAERGAALDAHAQALVV 60

Query: 56  LGKVRDLVEAAGGTLGSIYKLVIYVKDIADKDEVGRARRDFFTAPQPCPYPCSTLVEVSG 115
           LGKV+ L+EAAGG +G++YKL +YV  IADKD +GRAR++FF       +P STLVEVSG
Sbjct: 61  LGKVKALLEAAGGHVGNLYKLNVYVTRIADKDAIGRARQEFFAG--QGTFPASTLVEVSG 118

Query: 116 LVFPELTVEIDAFARLDIDL 135
           LVFPEL VEIDA+ARLDIDL
Sbjct: 119 LVFPELLVEIDAWARLDIDL 138


>ref|ZP_06594666.1| conserved hypothetical protein [Streptomyces albus J1074]
 gb|EFE85127.1| conserved hypothetical protein [Streptomyces albus J1074]
          Length = 161

 Score = 98.2 bits (243), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/129 (47%), Positives = 78/129 (60%), Gaps = 9/129 (6%)

Query: 3   TVRHIKTDKVAELA-AATWSNCLVIGKEISMSGMTAHPASRNSVL---STYEQTLVVLGK 58
           T R + +++VA       +S+  V+G   S+SGM A    R  VL   S Y+Q    L K
Sbjct: 28  TARAVDSEEVAGPPRPGMFSHAKVVGDRFSLSGMHAGDG-RGGVLGDGSAYDQARRALTK 86

Query: 59  VRDLVEAAGGTLGSIYKLVIYVKDIADKDEVGRARRDFFTAPQPCPYPCSTLVEVSGLVF 118
           V+ LVEAAGG +  +  L +Y+ DI DK EVGRAR +FFT      +PCSTLVEVS LV 
Sbjct: 87  VKALVEAAGGVMDDVQNLRVYLTDIQDKGEVGRARTEFFTG----DFPCSTLVEVSALVE 142

Query: 119 PELTVEIDA 127
           P LTVEI+A
Sbjct: 143 PALTVEIEA 151


>ref|ZP_06574651.1| predicted protein [Streptomyces ghanaensis ATCC 14672]
 gb|EFE65112.1| predicted protein [Streptomyces ghanaensis ATCC 14672]
          Length = 164

 Score = 97.4 bits (241), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 57/131 (43%), Positives = 79/131 (60%), Gaps = 7/131 (5%)

Query: 1   MQTVRHIKTDKVAELAAATWSNCLVIGKEISMSGMTAHPASRNSVL--STYEQTLVVLGK 58
           M+  R I +D V E A   WSNCL I   I +SGMTA      +VL  + +EQ  VV GK
Sbjct: 32  MKKQRFI-SDAVREPADRMWSNCLRIDDLIMISGMTARGQDGETVLGDTAHEQARVVFGK 90

Query: 59  VRDLVEAAGGTLGSIYKLVIYVKDIADKDEVGRARRDFFTAPQPCPYPCSTLVEVSGLVF 118
           +++LVEAAG  +  I K+ I+V D+ D   V +AR++FF+      +P  +LVEVS L  
Sbjct: 91  IKNLVEAAGAVMDDIVKMTIFVTDMRDNAGVWKARQEFFSG----DFPACSLVEVSALAK 146

Query: 119 PELTVEIDAFA 129
           PE+ +EI+A A
Sbjct: 147 PEILLEIEAIA 157