BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0015.p (346 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_07674486.1| outer membrane porin [Ralstonia sp. 5_7_47FAA... 354 1e-95 ref|YP_001893016.1| porin Gram-negative type [Ralstonia picketti... 350 3e-94 ref|ZP_02406476.1| outer membrane porin [Burkholderia pseudomall... 242 6e-62 ref|ZP_01765609.1| outer membrane porin [Burkholderia pseudomall... 242 9e-62 ref|YP_105955.1| putative outer membrane porin OpcP [Burkholderi... 241 1e-61 >ref|ZP_07674486.1| outer membrane porin [Ralstonia sp. 5_7_47FAA] gb|EFP67166.1| outer membrane porin [Ralstonia sp. 5_7_47FAA] Length = 366 Score = 354 bits (909), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 192/350 (54%), Positives = 238/350 (68%), Gaps = 13/350 (3%) Query: 1 MKKVLFAVAATGFAASAFAQSNVTIYGSLDAGVAYVSNL----GGGSVARVDQGTMQPDR 56 MK LFA+AA A +A AQSNVT+YGS+D GVAY+++L GS R+D GTMQPDR Sbjct: 1 MKTTLFAIAAMSLAGTAAAQSNVTLYGSIDEGVAYINSLKSGASSGSALRMDPGTMQPDR 60 Query: 57 IGFRGTEDLGGNLKANFQLETGFYTDSGAQPSAGKLFNRYSTVGLSGD-FGAVTMGHMPD 115 G RG+EDLGG +A FQLE+GF D+G+ AGKLFNR + VGL+ D G + +GH D Sbjct: 61 FGLRGSEDLGGGTQAIFQLESGFLGDTGSSVVAGKLFNRTAWVGLTNDRLGNIQLGHQAD 120 Query: 116 IVFDYVGKLSNGYQLTNWYLFHPGNLDSLANTYQFDNAVRYTSPTFAGLQLSGMYGFGEV 175 +FDY+G+LSNG+QLTN+YLFHPGN D+LAN +Q DNAVRY SP F GLQL GMYGFGEV Sbjct: 121 FMFDYLGRLSNGFQLTNFYLFHPGNFDNLANQFQIDNAVRYVSPIFGGLQLGGMYGFGEV 180 Query: 176 AGDNSNGRNISAGATYTNGPLRAALAYSKLNNRAAGYGGAFLQSLGLGT-----AATVFN 230 G S R+ S GA YTNG RAA AY+ N+RA G + LGT T + Sbjct: 181 PGSPSKSRSYSLGAYYTNGGFRAAAAYTASNDRALDVAGRLGITNTLGTTLVPGVMTPMS 240 Query: 231 SLSTTAAGVGYTIG--PVRLNADYTQVKISLPTGVTPKQKNFDLGAAWRYAAADTLNFGY 288 S+ + AG Y P+++NA YTQ +I+L G + +N DLG AW Y+AA+TLN GY Sbjct: 241 SVKSFGAGTLYQFSGLPLQINAVYTQTRITLG-GANARAQNVDLGTAWHYSAANTLNVGY 299 Query: 289 GLSKLESARWNTFSLSHVHAFSKRTEFYVQAAYQRAGGSARFAVMNGTGI 338 SK E ARWN FSL +V+AFSKRT+ YVQ YQRA G A+ A +NG G+ Sbjct: 300 TFSKYEGARWNQFSLGNVYAFSKRTQVYVQGTYQRASGDAQSAAINGVGV 349 >ref|YP_001893016.1| porin Gram-negative type [Ralstonia pickettii 12J] ref|YP_002984542.1| porin [Ralstonia pickettii 12D] gb|ACD29589.1| porin Gram-negative type [Ralstonia pickettii 12J] gb|ACS65870.1| porin Gram-negative type [Ralstonia pickettii 12D] Length = 366 Score = 350 bits (897), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 191/350 (54%), Positives = 239/350 (68%), Gaps = 13/350 (3%) Query: 1 MKKVLFAVAATGFAASAFAQSNVTIYGSLDAGVAYVSNLGGGSVA----RVDQGTMQPDR 56 MK LFA+AA A +A AQSNVT+YGS+D GVAY+++L + + R+D GTMQPDR Sbjct: 1 MKTTLFAIAAMSLAGTAAAQSNVTLYGSIDEGVAYINSLKSSASSGSALRMDPGTMQPDR 60 Query: 57 IGFRGTEDLGGNLKANFQLETGFYTDSGAQPSAGKLFNRYSTVGLSGD-FGAVTMGHMPD 115 G RG+EDLGG +A FQLE+GF D+G+ AGKLFNR + VGL+ D G + +GH D Sbjct: 61 FGLRGSEDLGGGTQAIFQLESGFLGDTGSSVVAGKLFNRTAWVGLTNDRLGNIQLGHQAD 120 Query: 116 IVFDYVGKLSNGYQLTNWYLFHPGNLDSLANTYQFDNAVRYTSPTFAGLQLSGMYGFGEV 175 +FDY+G+LSNG+QLTN+YLFHPGN D+LAN +Q DNAVRY SP F GLQL GMYGFGEV Sbjct: 121 FMFDYLGRLSNGFQLTNFYLFHPGNFDNLANQFQIDNAVRYVSPIFGGLQLGGMYGFGEV 180 Query: 176 AGDNSNGRNISAGATYTNGPLRAALAYSKLNNRAAGYGGAFLQSLGLGT-----AATVFN 230 G S R+ S GA YTNG RAA AY+ N+RA G + LGT T + Sbjct: 181 PGSPSKSRSYSLGAYYTNGGFRAAAAYTASNDRALDIAGRLGITNTLGTTLVPGVMTPMS 240 Query: 231 SLSTTAAGVGYTIG--PVRLNADYTQVKISLPTGVTPKQKNFDLGAAWRYAAADTLNFGY 288 S+ + AG Y PV++NA YTQ +I+L +G + +N DLG AW Y+AA+TLN GY Sbjct: 241 SVKSFGAGTLYQFSNLPVQINAVYTQTRITL-SGANARAQNVDLGTAWHYSAANTLNVGY 299 Query: 289 GLSKLESARWNTFSLSHVHAFSKRTEFYVQAAYQRAGGSARFAVMNGTGI 338 SK E ARWN FSL +V+AFSKRT+ YVQ YQRA G A+ A +NG G+ Sbjct: 300 TFSKYEGARWNQFSLGNVYAFSKRTQVYVQGTYQRASGDAQSAAINGVGV 349 >ref|ZP_02406476.1| outer membrane porin [Burkholderia pseudomallei DM98] Length = 362 Score = 242 bits (618), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 142/329 (43%), Positives = 198/329 (60%), Gaps = 17/329 (5%) Query: 15 ASAFAQSNVTIYGSLDAGVAYVSNLGGGSVARVDQGTMQPDRIGFRGTEDLGGNLKANFQ 74 A A+AQS+VT+YGSLDAGVAYV+N+GGG+ + QG QPDR G +G EDLGG LKA FQ Sbjct: 16 AGAWAQSSVTLYGSLDAGVAYVNNVGGGAKWSMIQGNTQPDRWGLKGVEDLGGGLKAIFQ 75 Query: 75 LETGFYTDSGAQPSAGKLFNRYSTVGLSGD-FGAVTMGHMPDIVFDYVGKLSNGYQLTNW 133 LE GFYT++G +AG ++NR + VGL+ D GA+T+GH FD++ LS+ + +W Sbjct: 76 LENGFYTNNGQMAAAGTMWNRQAFVGLNSDRLGALTLGHQTPFNFDWLDPLSSAFLAQSW 135 Query: 134 YLFHPGNLDSLAN--TYQFDNAVRYTSPTFAGLQLSGMYGFGEVAGDNSNGRNISAGATY 191 Y FHPGNLD LA+ T F+N+V+Y SP FAG + M GFG + S GR +S G Y Sbjct: 136 YAFHPGNLDQLADTSTVPFNNSVKYRSPVFAGFTVGAMLGFGNTT-NFSTGRTMSFGVNY 194 Query: 192 TNGPLRAALAYSKLNNRA---------AGYGGAFLQSLGLGTAATVFNSLSTTAAGVGYT 242 NGP +AA YS +++A AG GG F G+ A+ V AG+ Y Sbjct: 195 ANGPFKAAAVYSNEHDQAFPMATVGGIAGPGGTF---QGMPVASYVAKKAQNMGAGLSYR 251 Query: 243 IGPVRLNADYTQVKISLPTGVTPKQKNFDLGAAWRYAAADTLNFGYGLSKLESARWNTFS 302 GP+ ++ YT+VK+ G + +++D GA ++ + + + G S L RW F Sbjct: 252 FGPLLVHGLYTRVKLQ-ANGHSDTFQSYDAGANYQSSPFNVIAGGAATSTLAGRRWTQFE 310 Query: 303 LSHVHAFSKRTEFYVQAAYQRAGGSARFA 331 L ++ SKRT+ YV Y+ A G+A+ A Sbjct: 311 LGDTYSLSKRTQLYVNVLYEHASGNAKAA 339 >ref|ZP_01765609.1| outer membrane porin [Burkholderia pseudomallei 305] gb|EBA49396.1| outer membrane porin [Burkholderia pseudomallei 305] Length = 397 Score = 242 bits (617), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 141/327 (43%), Positives = 198/327 (60%), Gaps = 17/327 (5%) Query: 17 AFAQSNVTIYGSLDAGVAYVSNLGGGSVARVDQGTMQPDRIGFRGTEDLGGNLKANFQLE 76 A+AQS+VT+YGSLDAGVAYV+N+GGG+ + QG QPDR G +G EDLGG LKA FQLE Sbjct: 53 AWAQSSVTLYGSLDAGVAYVNNVGGGAKWSMIQGNTQPDRWGLKGVEDLGGGLKAIFQLE 112 Query: 77 TGFYTDSGAQPSAGKLFNRYSTVGLSGD-FGAVTMGHMPDIVFDYVGKLSNGYQLTNWYL 135 GFYT++G +AG ++NR + VGL+ D GA+T+GH + FD++ LS+ + +WY Sbjct: 113 NGFYTNNGQMAAAGTMWNRQAFVGLNSDRLGALTLGHQTPLNFDWLDPLSSAFLAQSWYA 172 Query: 136 FHPGNLDSLAN--TYQFDNAVRYTSPTFAGLQLSGMYGFGEVAGDNSNGRNISAGATYTN 193 FHPGNLD LA+ T F+N+V+Y SP FAG + M GFG + S GR +S G Y N Sbjct: 173 FHPGNLDQLADTSTVPFNNSVKYRSPAFAGFTVGAMLGFGNTT-NFSTGRTMSFGVNYAN 231 Query: 194 GPLRAALAYSKLNNRA---------AGYGGAFLQSLGLGTAATVFNSLSTTAAGVGYTIG 244 GP +AA YS +++A AG GG F G+ A+ V AG+ Y G Sbjct: 232 GPFKAAAVYSNEHDQAFPMATVGGIAGPGGTF---QGMPVASYVAKKAQNMGAGLSYRFG 288 Query: 245 PVRLNADYTQVKISLPTGVTPKQKNFDLGAAWRYAAADTLNFGYGLSKLESARWNTFSLS 304 P+ ++ YT+VK+ G + +++D GA ++ + + + G S L RW F L Sbjct: 289 PLLVHGLYTRVKLQ-ANGHSDTFQSYDAGANYQSSPFNVIAGGAATSTLAGRRWTQFELG 347 Query: 305 HVHAFSKRTEFYVQAAYQRAGGSARFA 331 ++ SKRT+ YV Y+ A G+A+ A Sbjct: 348 DTYSLSKRTQLYVNVLYEHASGNAKAA 374 >ref|YP_105955.1| putative outer membrane porin OpcP [Burkholderia mallei ATCC 23344] ref|YP_337641.1| outer membrane porin protein [Burkholderia pseudomallei 1710b] ref|ZP_02414985.1| outer membrane porin [Burkholderia pseudomallei 14] ref|ZP_02474742.1| outer membrane porin [Burkholderia pseudomallei B7210] ref|ZP_02485234.1| outer membrane porin [Burkholderia pseudomallei 7894] ref|ZP_02509488.1| outer membrane porin [Burkholderia pseudomallei BCC215] ref|ZP_04880790.1| putative outer membrane porin [Burkholderia mallei ATCC 10399] ref|ZP_04899232.1| outer membrane porin [Burkholderia pseudomallei S13] ref|ZP_04907163.1| putative outer membrane porin [Burkholderia mallei FMH] ref|ZP_04911122.1| putative outer membrane porin [Burkholderia mallei JHU] ref|ZP_04956075.1| outer membrane porin [Burkholderia pseudomallei 1710a] ref|ZP_04967693.1| outer membrane porin [Burkholderia pseudomallei 406e] ref|ZP_04973293.1| putative outer membrane porin [Burkholderia mallei 2002721280] gb|AAU46687.1| putative outer membrane porin OpcP [Burkholderia mallei ATCC 23344] gb|ABA51782.1| outer membrane porin protein [Burkholderia pseudomallei 1710b] gb|EDK55485.1| putative outer membrane porin [Burkholderia mallei FMH] gb|EDK61419.1| putative outer membrane porin [Burkholderia mallei JHU] gb|EDK84168.1| putative outer membrane porin [Burkholderia mallei 2002721280] gb|EDO87332.1| outer membrane porin [Burkholderia pseudomallei 406e] gb|EDP85144.1| putative outer membrane porin [Burkholderia mallei ATCC 10399] gb|EDS82244.1| outer membrane porin [Burkholderia pseudomallei S13] gb|EET05597.1| outer membrane porin [Burkholderia pseudomallei 1710a] Length = 362 Score = 241 bits (615), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 141/327 (43%), Positives = 198/327 (60%), Gaps = 17/327 (5%) Query: 17 AFAQSNVTIYGSLDAGVAYVSNLGGGSVARVDQGTMQPDRIGFRGTEDLGGNLKANFQLE 76 A+AQS+VT+YGSLDAGVAYV+N+GGG+ + QG QPDR G +G EDLGG LKA FQLE Sbjct: 18 AWAQSSVTLYGSLDAGVAYVNNVGGGAKWSMIQGNTQPDRWGLKGVEDLGGGLKAIFQLE 77 Query: 77 TGFYTDSGAQPSAGKLFNRYSTVGLSGD-FGAVTMGHMPDIVFDYVGKLSNGYQLTNWYL 135 GFYT++G +AG ++NR + VGL+ D GA+T+GH FD++ LS+ + +WY Sbjct: 78 NGFYTNNGQMAAAGTMWNRQAFVGLNSDRLGALTLGHQTPFNFDWLDPLSSAFLAQSWYA 137 Query: 136 FHPGNLDSLAN--TYQFDNAVRYTSPTFAGLQLSGMYGFGEVAGDNSNGRNISAGATYTN 193 FHPGNLD LA+ T F+N+V+Y SP FAG + M GFG + S GR +S G Y N Sbjct: 138 FHPGNLDQLADTSTVPFNNSVKYRSPVFAGFTVGAMLGFGNTT-NFSTGRTMSFGVNYAN 196 Query: 194 GPLRAALAYSKLNNRA---------AGYGGAFLQSLGLGTAATVFNSLSTTAAGVGYTIG 244 GP +AA YS +++A AG GG F G+ A+ V AG+ Y G Sbjct: 197 GPFKAAAVYSNEHDQAFPMATVGGIAGPGGTF---QGMPVASYVAKKAQNMGAGLSYRFG 253 Query: 245 PVRLNADYTQVKISLPTGVTPKQKNFDLGAAWRYAAADTLNFGYGLSKLESARWNTFSLS 304 P+ ++ YT+VK+ G + +++D GA ++ + + + G S L RW+ F L Sbjct: 254 PLLVHGLYTRVKLQ-ANGHSDTFQSYDAGANYQSSPFNVIAGGAATSTLAGRRWSQFELG 312 Query: 305 HVHAFSKRTEFYVQAAYQRAGGSARFA 331 ++ SKRT+ YV Y+ A G+A+ A Sbjct: 313 DTYSLSKRTQLYVNVLYEHASGNAKAA 339