BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0004.p         (174 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003778110.1| two component sensor histidine kinase [Herba...   143   1e-32
ref|YP_285019.1| sensor histidine kinase [Dechloromonas aromatic...    92   3e-17
ref|YP_983592.1| integral membrane sensor signal transduction hi...    89   3e-16
ref|YP_004620572.1| histidine kinase [Ramlibacter tataouinensis ...    82   4e-14
ref|YP_969246.1| integral membrane sensor signal transduction hi...    82   4e-14

>ref|YP_003778110.1| two component sensor histidine kinase [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ66202.1| two component sensor histidine kinase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 492

 Score =  143 bits (360), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/123 (72%), Positives = 101/123 (82%)

Query: 4   GLSFRQLLLAAFLLIAALLSGTSVHALFTLERMSVHSRETAGQAVRLTEQAQRLAERTVA 63
           GLSFRQLLLAAFLLIAALLSGTS+HALFTL+RMS +SRETA QAV+LTE AQRLAERTVA
Sbjct: 23  GLSFRQLLLAAFLLIAALLSGTSIHALFTLDRMSANSRETARQAVQLTEAAQRLAERTVA 82

Query: 64  MERSARQYLVLDDPAFRDRYAEAWQQAKTALTELQEALPQTLADTFNSWNSYGEAAWTVL 123
           MERSARQYLVLDDPAF DR+ EA  QA+ AL EL ++LP+   + F  W+ Y + A  VL
Sbjct: 83  MERSARQYLVLDDPAFHDRFNEARDQARQALGELADSLPKAPREMFGQWSVYVDEAAGVL 142

Query: 124 QAD 126
            AD
Sbjct: 143 DAD 145


>ref|YP_285019.1| sensor histidine kinase [Dechloromonas aromatica RCB]
 gb|AAZ46549.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A, N-terminal [Dechloromonas
           aromatica RCB]
          Length = 482

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 72/132 (54%), Gaps = 1/132 (0%)

Query: 5   LSFRQLLLAAFLLIAALLSGTSVHALFTLERMSVHSRETAGQAVRLTEQAQRLAERTVAM 64
           +SFRQ +L  F LI  LL G +V +   +ER+   SR  + QA++LT   Q L ERTV +
Sbjct: 19  ISFRQGMLLGFALIVLLLGGAAVQSWLVVERLVEQSRRGSEQAIQLTAAIQELGERTVDI 78

Query: 65  ERSARQYLVLDDPAFRDRYAEAWQQAKTALTELQEALPQTLADTFNSWNSYGEAAWTVLQ 124
           ERSARQYLVLD+P FR R+ E   Q+   +  L     + L      W    EA  + L+
Sbjct: 79  ERSARQYLVLDNPVFRQRFDEHLAQSLAVIDRLDGMAAEPLLPLLGGWRMVAEALRSGLE 138

Query: 125 ADQTPAVAIVPV 136
            +  P   I+P+
Sbjct: 139 QN-IPQAEIIPL 149


>ref|YP_983592.1| integral membrane sensor signal transduction histidine kinase
           [Polaromonas naphthalenivorans CJ2]
 gb|ABM38671.1| integral membrane sensor signal transduction histidine kinase
           [Polaromonas naphthalenivorans CJ2]
          Length = 487

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/103 (48%), Positives = 70/103 (67%), Gaps = 1/103 (0%)

Query: 1   MLPGLSFRQLLLAAFLLIAALLSGTSVHALFTLERMSVHSRETAGQAVRLTEQAQRLAER 60
           ML   SFRQLL+ AFLLIA LL   S+ ALF L+ ++V SR+ A +A+ L+  AQ L ER
Sbjct: 15  MLQRFSFRQLLVIAFLLIAVLLGAASLRALFALQDLTVQSRDNAARALDLSGAAQSLRER 74

Query: 61  TVAMERSARQYLVLDDPAFRDRYAEAWQQAKTALTEL-QEALP 102
           +++MERS+RQ +VLDD   R R+ +  + A + LT L +E +P
Sbjct: 75  SLSMERSSRQSVVLDDRVLRQRFRDEARDATSILTRLAREDIP 117


>ref|YP_004620572.1| histidine kinase [Ramlibacter tataouinensis TTB310]
 gb|AEG94553.1| candidate histidine kinase, classic [Ramlibacter tataouinensis
           TTB310]
          Length = 479

 Score = 81.6 bits (200), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/98 (47%), Positives = 61/98 (62%), Gaps = 1/98 (1%)

Query: 3   PGL-SFRQLLLAAFLLIAALLSGTSVHALFTLERMSVHSRETAGQAVRLTEQAQRLAERT 61
           PGL SFRQLLL AFLLI  LL GT++ A+  L+R+   S +   +A+ L   AQ L  RT
Sbjct: 10  PGLVSFRQLLLVAFLLIGVLLGGTALRAVVILDRLMAQSGDETTRALELNASAQALTART 69

Query: 62  VAMERSARQYLVLDDPAFRDRYAEAWQQAKTALTELQE 99
           V MER+ARQ L+ +D   R R+ EA   A+ AL  + E
Sbjct: 70  VDMERAARQSLIFNDRLLRRRFEEATDGARDALRRMTE 107


>ref|YP_969246.1| integral membrane sensor signal transduction histidine kinase
           [Acidovorax citrulli AAC00-1]
 ref|YP_004233296.1| integral membrane sensor signal transduction histidine kinase
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gb|ABM31472.1| integral membrane sensor signal transduction histidine kinase
           [Acidovorax citrulli AAC00-1]
 gb|ADX44729.1| integral membrane sensor signal transduction histidine kinase
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 486

 Score = 81.6 bits (200), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/106 (46%), Positives = 68/106 (64%), Gaps = 1/106 (0%)

Query: 2   LPGLSFRQLLLAAFLLIAALLSGTSVHALFTLERMSVHSRETAGQAVRLTEQAQRLAERT 61
           L GLSF+Q+LL AFLLIA L   +S+ A+FTLE++ V SR  A +A++L   AQ L  R 
Sbjct: 17  LGGLSFQQMLLLAFLLIAGLQGASSLRAIFTLEQLMVQSRNGAAEAIQLNAAAQSLNARG 76

Query: 62  VAMERSARQYLVLDDPAFRDRYAEAWQQAKTALTELQ-EALPQTLA 106
             +ER+ARQ LVL D + R R+ +  ++A   L  L+ + LP  LA
Sbjct: 77  QTLERAARQSLVLADRSLRRRFDDISREAHEILQRLETKGLPPELA 122