BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0001.p (224 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_524029.1| Fis family two component sigma-54 specific tran... 272 3e-71 ref|YP_983594.1| Fis family two component sigma-54 specific tran... 263 1e-68 ref|YP_969244.1| Fis family two component sigma-54 specific tran... 262 3e-68 ref|YP_547967.1| Fis family two component sigma-54 specific tran... 261 4e-68 ref|YP_004233294.1| putative two component, sigma54 specific, tr... 261 4e-68 >ref|YP_524029.1| Fis family two component sigma-54 specific transcriptional regulator [Rhodoferax ferrireducens T118] gb|ABD70498.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhodoferax ferrireducens T118] Length = 477 Score = 272 bits (695), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 136/195 (69%), Positives = 164/195 (84%), Gaps = 3/195 (1%) Query: 6 HLLLVDDDADLLQLLSLRLTANGYRVTGVASTEAAQAQLAMDLPALVISDIRLPGKDGLA 65 HLL+VDDDAD+L+LL++RLTA GYRVT V S EAA QL ++ P LV+SD+RLPG+DGLA Sbjct: 22 HLLVVDDDADMLRLLTIRLTAAGYRVTAVTSAEAAMTQLHIERPQLVLSDVRLPGRDGLA 81 Query: 66 LFDEIRAQYPALPVILLTAHGTIPDAVEATTRGAFAYLTKPYDPKILLAKIEQALSLTA- 124 LFD+IRAQ+P+LPVILLTAHGTIPDAV+AT RG F+YLTKP+D K LL KI QALSL+A Sbjct: 82 LFDDIRAQHPSLPVILLTAHGTIPDAVQATERGVFSYLTKPFDGKSLLDKIAQALSLSAP 141 Query: 125 --SVDGNADEAWREELISRSPRMAEVLSEARLVAVSDASILIRGESGTGKELLARAIHRA 182 SV + +AW+ +++SRS RMAEVL+EA +VA SDAS+L+RGESGTGKELLARAIH+A Sbjct: 142 AHSVKPGSPQAWQNQIVSRSSRMAEVLAEAHMVAQSDASVLLRGESGTGKELLARAIHQA 201 Query: 183 SRRAKAPFIAVNCAA 197 RA PFIAVNC A Sbjct: 202 GSRAGKPFIAVNCGA 216 >ref|YP_983594.1| Fis family two component sigma-54 specific transcriptional regulator [Polaromonas naphthalenivorans CJ2] gb|ABM38673.1| two component, sigma54 specific, transcriptional regulator, Fis family [Polaromonas naphthalenivorans CJ2] Length = 462 Score = 263 bits (672), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 134/194 (69%), Positives = 160/194 (82%), Gaps = 3/194 (1%) Query: 7 LLLVDDDADLLQLLSLRLTANGYRVTGVASTEAAQAQLAMDLPALVISDIRLPGKDGLAL 66 LL+VDDDAD+L+LL++RLTA GYRVT V S EAA +L + P LV+SD+RLPGKDGLAL Sbjct: 12 LLVVDDDADMLRLLTMRLTAAGYRVTAVTSAEAALTELQLHRPQLVLSDVRLPGKDGLAL 71 Query: 67 FDEIRAQYPALPVILLTAHGTIPDAVEATTRGAFAYLTKPYDPKILLAKIEQALSLTASV 126 FD+IRA++P+LPVILLTAHGTIPDAVEAT RG F YLTKP+D K L KI +AL L+A V Sbjct: 72 FDDIRARHPSLPVILLTAHGTIPDAVEATERGVFTYLTKPFDGKALEGKIAEALLLSAPV 131 Query: 127 D---GNADEAWREELISRSPRMAEVLSEARLVAVSDASILIRGESGTGKELLARAIHRAS 183 + + EAW+ +ISRS RMAEVL+EAR+VA SDAS+L+RGESGTGKELLA+AIH+AS Sbjct: 132 NPARQGSPEAWQTRIISRSSRMAEVLAEARMVATSDASVLLRGESGTGKELLAQAIHQAS 191 Query: 184 RRAKAPFIAVNCAA 197 RA PFIAVNC A Sbjct: 192 ARAAKPFIAVNCGA 205 >ref|YP_969244.1| Fis family two component sigma-54 specific transcriptional regulator [Acidovorax citrulli AAC00-1] gb|ABM31470.1| two component, sigma54 specific, transcriptional regulator, Fis family [Acidovorax citrulli AAC00-1] Length = 471 Score = 262 bits (669), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 135/199 (67%), Positives = 161/199 (80%), Gaps = 3/199 (1%) Query: 2 STPR-HLLLVDDDADLLQLLSLRLTANGYRVTGVASTEAAQAQLAMDLPALVISDIRLPG 60 S PR +L+VDDDAD+L+LLSLRL A GY +T V S EAA AQL P LV+SD+RLPG Sbjct: 10 SAPRPRILVVDDDADMLRLLSLRLNAAGYEITAVPSAEAALAQLETSRPQLVLSDVRLPG 69 Query: 61 KDGLALFDEIRAQYPALPVILLTAHGTIPDAVEATTRGAFAYLTKPYDPKILLAKIEQAL 120 +DGLALFDE+R+++P+LPVILLTAHGTIPDAVEAT RG F YLTKPYD K LL KI QAL Sbjct: 70 RDGLALFDEVRSRHPSLPVILLTAHGTIPDAVEATARGVFTYLTKPYDAKDLLDKIAQAL 129 Query: 121 SLT--ASVDGNADEAWREELISRSPRMAEVLSEARLVAVSDASILIRGESGTGKELLARA 178 +L+ A+ AD WR E++SRS RMA++L+EAR+VA SDAS+L+ G+SGTGKELLARA Sbjct: 130 ALSAPATQTPQADSTWRAEIVSRSNRMADLLAEARMVAQSDASVLLLGDSGTGKELLARA 189 Query: 179 IHRASRRAKAPFIAVNCAA 197 IHRAS RA PF+AVNC A Sbjct: 190 IHRASPRAARPFVAVNCGA 208 >ref|YP_547967.1| Fis family two component sigma-54 specific transcriptional regulator [Polaromonas sp. JS666] gb|ABE43069.1| two component, sigma54 specific, transcriptional regulator, Fis family [Polaromonas sp. JS666] Length = 466 Score = 261 bits (668), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 131/195 (67%), Positives = 161/195 (82%), Gaps = 3/195 (1%) Query: 6 HLLLVDDDADLLQLLSLRLTANGYRVTGVASTEAAQAQLAMDLPALVISDIRLPGKDGLA 65 HLL+VDDD D+L+LL++RLTA GYRVT V S EAA QL ++ P LV+SD++LPG+DGLA Sbjct: 17 HLLVVDDDPDMLRLLTIRLTAAGYRVTAVTSAEAAMTQLHIERPQLVLSDVQLPGRDGLA 76 Query: 66 LFDEIRAQYPALPVILLTAHGTIPDAVEATTRGAFAYLTKPYDPKILLAKIEQALSLTA- 124 LFD+IRA++P+LPVILLTAHGTIPDAVEAT RG F YLTKP+D K LL KI QAL+L+A Sbjct: 77 LFDDIRARHPSLPVILLTAHGTIPDAVEATERGVFTYLTKPFDGKGLLDKIAQALALSAP 136 Query: 125 --SVDGNADEAWREELISRSPRMAEVLSEARLVAVSDASILIRGESGTGKELLARAIHRA 182 + EAW+ ++ISRS RMAE L+EAR+++ SDAS+L+RGESGTGKELLA+AIH+A Sbjct: 137 SHPAKRGSPEAWQHQIISRSSRMAEALAEARMISQSDASVLLRGESGTGKELLAQAIHQA 196 Query: 183 SRRAKAPFIAVNCAA 197 S RA PFIAVNC A Sbjct: 197 SPRAGKPFIAVNCGA 211 >ref|YP_004233294.1| putative two component, sigma54 specific, transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX44727.1| putative two component, sigma54 specific, transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] Length = 471 Score = 261 bits (668), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 135/199 (67%), Positives = 161/199 (80%), Gaps = 3/199 (1%) Query: 2 STPR-HLLLVDDDADLLQLLSLRLTANGYRVTGVASTEAAQAQLAMDLPALVISDIRLPG 60 S PR +L+VDDDAD+L+LLSLRL A GY +T V S EAA AQL P LV+SD+RLPG Sbjct: 10 SAPRPRILVVDDDADMLRLLSLRLNAAGYEITAVPSAEAALAQLETSRPQLVLSDVRLPG 69 Query: 61 KDGLALFDEIRAQYPALPVILLTAHGTIPDAVEATTRGAFAYLTKPYDPKILLAKIEQAL 120 +DGLALFDE+R+++P+LPVILLTAHGTIPDAVEAT RG F YLTKPYD K LL KI QAL Sbjct: 70 RDGLALFDEVRSRHPSLPVILLTAHGTIPDAVEATARGVFTYLTKPYDAKDLLDKIAQAL 129 Query: 121 SLT--ASVDGNADEAWREELISRSPRMAEVLSEARLVAVSDASILIRGESGTGKELLARA 178 +L+ A+ AD WR E++SRS RMA++L+EAR+VA SDAS+L+ G+SGTGKELLARA Sbjct: 130 ALSAPATRTPQADSTWRAEIVSRSNRMADLLAEARMVAQSDASVLLLGDSGTGKELLARA 189 Query: 179 IHRASRRAKAPFIAVNCAA 197 IHRAS RA PF+AVNC A Sbjct: 190 IHRASPRAARPFVAVNCGA 208