BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0021.0001.p (273 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004751574.1| DNA polymerase II [Collimonas fungivorans Te... 338 6e-91 ref|ZP_06192197.1| DNA polymerase II [Serratia odorifera 4Rx13] ... 338 6e-91 ref|YP_001476965.1| DNA polymerase II [Serratia proteamaculans 5... 336 2e-90 ref|YP_001859839.1| DNA-directed DNA polymerase [Burkholderia ph... 335 4e-90 ref|YP_004499129.1| DNA polymerase B region [Serratia sp. AS12] ... 334 8e-90 >ref|YP_004751574.1| DNA polymerase II [Collimonas fungivorans Ter331] gb|AEK60751.1| DNA polymerase II [Collimonas fungivorans Ter331] Length = 786 Score = 338 bits (866), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 159/189 (84%), Positives = 174/189 (92%) Query: 1 LLSFLLERASVTGLPADRNGGSVAAFGHLYMPHMHRLGFVAPNLGDTPGEPSPGGFVMDS 60 LL FLLERA+VTGLPADR+GGSVAAF HLY+PHMHR G+VAPNLG+ G+ SPGGFVMDS Sbjct: 349 LLEFLLERAAVTGLPADRSGGSVAAFSHLYLPHMHRQGYVAPNLGEVAGDSSPGGFVMDS 408 Query: 61 QSGLFDSVLVLDYKSLYPSIIRTFLIDPVGLIEGLAHPGDADSVPGFRGARFSRSKHSLP 120 QSGL+DSVLVLDYKSLYPSIIRTFLIDPVGLIEG+ HPGD+DSVPGFRG RFSRSKH LP Sbjct: 409 QSGLYDSVLVLDYKSLYPSIIRTFLIDPVGLIEGMQHPGDSDSVPGFRGGRFSRSKHCLP 468 Query: 121 AIVEKIWQGREVAKRQQNKPLSQALKIIMNSLYGVLGSTGCRFFDARLASSITMRGHEIM 180 IV +IWQGRE AKRQ+N+PLSQALKIIMN+ GVLGSTGCRFFD RLASS+TMRGHEIM Sbjct: 469 GIVSQIWQGRETAKRQRNQPLSQALKIIMNAFCGVLGSTGCRFFDPRLASSVTMRGHEIM 528 Query: 181 HRTRELIEA 189 H+TRELIEA Sbjct: 529 HKTRELIEA 537 >ref|ZP_06192197.1| DNA polymerase II [Serratia odorifera 4Rx13] gb|EFA15218.1| DNA polymerase II [Serratia odorifera 4Rx13] Length = 787 Score = 338 bits (866), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 162/189 (85%), Positives = 175/189 (92%) Query: 1 LLSFLLERASVTGLPADRNGGSVAAFGHLYMPHMHRLGFVAPNLGDTPGEPSPGGFVMDS 60 LL+FLLERA+VTGL ADR+GGSVAAF +LYMP MHRLGFVAPNLG+ P E SPGGFVMDS Sbjct: 350 LLTFLLERATVTGLAADRSGGSVAAFSNLYMPRMHRLGFVAPNLGEQPEEHSPGGFVMDS 409 Query: 61 QSGLFDSVLVLDYKSLYPSIIRTFLIDPVGLIEGLAHPGDADSVPGFRGARFSRSKHSLP 120 Q GL+DSVLVLDYKSLYPSIIRTFLIDPVGL+EG+ HPGDADSVPGFR ARFSR KH LP Sbjct: 410 QPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGMQHPGDADSVPGFRHARFSRGKHCLP 469 Query: 121 AIVEKIWQGREVAKRQQNKPLSQALKIIMNSLYGVLGSTGCRFFDARLASSITMRGHEIM 180 AIVE+IWQGRE AKRQQNKPLSQALKIIMN+LYGVLGS+GCRFFD RLASSIT+RGHEIM Sbjct: 470 AIVEQIWQGREAAKRQQNKPLSQALKIIMNALYGVLGSSGCRFFDPRLASSITLRGHEIM 529 Query: 181 HRTRELIEA 189 +TRELIEA Sbjct: 530 RQTRELIEA 538 >ref|YP_001476965.1| DNA polymerase II [Serratia proteamaculans 568] gb|ABV39837.1| DNA-directed DNA polymerase [Serratia proteamaculans 568] Length = 787 Score = 336 bits (862), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 162/189 (85%), Positives = 175/189 (92%) Query: 1 LLSFLLERASVTGLPADRNGGSVAAFGHLYMPHMHRLGFVAPNLGDTPGEPSPGGFVMDS 60 LL+FLLERA+VTGL ADR+GGSVAAF +LYMP MHRLGFVAPNLG+ P E SPGGFVMDS Sbjct: 350 LLTFLLERATVTGLAADRSGGSVAAFSNLYMPRMHRLGFVAPNLGEQPEEHSPGGFVMDS 409 Query: 61 QSGLFDSVLVLDYKSLYPSIIRTFLIDPVGLIEGLAHPGDADSVPGFRGARFSRSKHSLP 120 Q GL+DSVLVLDYKSLYPSIIRTFLIDPVGL+EG+ HPGDADSVPGFR ARFSRSKH LP Sbjct: 410 QPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGMQHPGDADSVPGFRHARFSRSKHCLP 469 Query: 121 AIVEKIWQGREVAKRQQNKPLSQALKIIMNSLYGVLGSTGCRFFDARLASSITMRGHEIM 180 AIVE+IWQGRE AKRQQNK LSQALKIIMN+LYGVLGS+GCRFFD RLASSIT+RGHEIM Sbjct: 470 AIVEQIWQGREAAKRQQNKALSQALKIIMNALYGVLGSSGCRFFDPRLASSITLRGHEIM 529 Query: 181 HRTRELIEA 189 +TRELIEA Sbjct: 530 RQTRELIEA 538 >ref|YP_001859839.1| DNA-directed DNA polymerase [Burkholderia phymatum STM815] gb|ACC72793.1| DNA-directed DNA polymerase [Burkholderia phymatum STM815] Length = 792 Score = 335 bits (860), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 161/193 (83%), Positives = 175/193 (90%) Query: 1 LLSFLLERASVTGLPADRNGGSVAAFGHLYMPHMHRLGFVAPNLGDTPGEPSPGGFVMDS 60 LLSFLLERA+VTGLPADR+GGSVAAF HLYMP MHRLGFVAPNLGD G SPGGFVMDS Sbjct: 355 LLSFLLERATVTGLPADRSGGSVAAFTHLYMPRMHRLGFVAPNLGDVAGAASPGGFVMDS 414 Query: 61 QSGLFDSVLVLDYKSLYPSIIRTFLIDPVGLIEGLAHPGDADSVPGFRGARFSRSKHSLP 120 + GL+DSVLVLDYKSLYPSIIR+FLIDPVGLI+GL HP DADSVPGF GARFSR++H LP Sbjct: 415 KPGLYDSVLVLDYKSLYPSIIRSFLIDPVGLIDGLRHPDDADSVPGFLGARFSRAQHCLP 474 Query: 121 AIVEKIWQGREVAKRQQNKPLSQALKIIMNSLYGVLGSTGCRFFDARLASSITMRGHEIM 180 +IV ++W+GRE AKR+QNKPLSQALKIIMN+ YGVLGSTGCRFFD RLASSITMRGHEIM Sbjct: 475 SIVAQVWEGREAAKREQNKPLSQALKIIMNAFYGVLGSTGCRFFDPRLASSITMRGHEIM 534 Query: 181 HRTRELIEAXAPT 193 HRTRELIEA T Sbjct: 535 HRTRELIEASGYT 547 >ref|YP_004499129.1| DNA polymerase B region [Serratia sp. AS12] ref|YP_004504081.1| DNA polymerase B region [Serratia sp. AS9] gb|AEF43820.1| DNA polymerase B region [Serratia sp. AS9] gb|AEF48772.1| DNA polymerase B region [Serratia sp. AS12] gb|AEG26480.1| DNA polymerase B region [Serratia sp. AS13] Length = 787 Score = 334 bits (857), Expect = 8e-90, Method: Compositional matrix adjust. Identities = 160/189 (84%), Positives = 174/189 (92%) Query: 1 LLSFLLERASVTGLPADRNGGSVAAFGHLYMPHMHRLGFVAPNLGDTPGEPSPGGFVMDS 60 LL+FLLERA+VTGL ADR+GGSVAAF +LY+P MHR GFVAPNLG+ P E SPGGFVMDS Sbjct: 350 LLTFLLERATVTGLAADRSGGSVAAFSNLYIPRMHRQGFVAPNLGEQPEEHSPGGFVMDS 409 Query: 61 QSGLFDSVLVLDYKSLYPSIIRTFLIDPVGLIEGLAHPGDADSVPGFRGARFSRSKHSLP 120 Q GL+DSVLVLDYKSLYPSIIRTFLIDPVGL+EG+ HPGDADSVPGFR ARFSR KH LP Sbjct: 410 QPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGMQHPGDADSVPGFRHARFSRGKHCLP 469 Query: 121 AIVEKIWQGREVAKRQQNKPLSQALKIIMNSLYGVLGSTGCRFFDARLASSITMRGHEIM 180 AIVE+IWQGRE AKRQQNKPLSQALKIIMN+LYGVLGS+GCRFFD RLASSIT+RGHEIM Sbjct: 470 AIVEQIWQGREAAKRQQNKPLSQALKIIMNALYGVLGSSGCRFFDPRLASSITLRGHEIM 529 Query: 181 HRTRELIEA 189 +TRELIEA Sbjct: 530 RQTRELIEA 538