BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0081.p (244 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775437.1| flagellar operon RNA polymerase sigma factor... 440 e-121 ref|YP_001353773.1| RNA polymerase sigma factor for flagellar op... 399 e-109 emb|CAL61487.2| RNA polymerase sigma factor for flagellar operon... 392 e-107 ref|ZP_08273913.1| RNA polymerase sigma factor for flagellar ope... 392 e-107 ref|YP_001099614.1| sigma F (sigma 28) factor of RNA polymerase,... 363 9e-99 >ref|YP_003775437.1| flagellar operon RNA polymerase sigma factor [Herbaspirillum seropedicae SmR1] gb|ADJ63529.1| RNA polymerase sigma factor for flagellar operon (sigma-F factor) protein [Herbaspirillum seropedicae SmR1] Length = 244 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 206/244 (84%), Positives = 227/244 (93%) Query: 1 MYNVKGKTAKNDLLQLHAALVKKLAHQMKAKLPPSVEVDDLIQAGMIGLLDAVNRYEETH 60 MYNVKGK KNDLL+ HA LVKKLAHQ+KAKLPPSVEVDDLIQAGM+GLLDAVNRYEETH Sbjct: 1 MYNVKGKKGKNDLLEQHAPLVKKLAHQLKAKLPPSVEVDDLIQAGMMGLLDAVNRYEETH 60 Query: 61 GAQFETYAVQRIRGAMLDELRSSDWLPRSIRQNTRKIEEAIHVLLQQLGRPPQEAEVATQ 120 GAQFETYAVQRIRGAMLDELRSSDWLPRSIRQN RK+EEA+ LLQQLGR P+EAE+A Sbjct: 61 GAQFETYAVQRIRGAMLDELRSSDWLPRSIRQNARKVEEAMQTLLQQLGRQPKEAELAQH 120 Query: 121 LKLSLPEYQDMLTECGGHQLIYYEDFHDADGGHEHFLDRYQTRDTDDPLQNLINGGFRDA 180 +++SL +YQ +L+ECGGHQLIYYEDFHD DGGHEHFLDR+QT D+DDPLQNLINGGFR+A Sbjct: 121 MQISLEDYQSLLSECGGHQLIYYEDFHDDDGGHEHFLDRHQTSDSDDPLQNLINGGFREA 180 Query: 181 VIDSIKALPEREKILMGLYYEQEMNLKEIGAVMGVSESRVCQLHSQAIARMRSTLREQAW 240 V+DSIKALPERE+ILM LYYEQEMNLKEIGAVMGVSESRVCQLHSQAI+RMRS LRE +W Sbjct: 181 VVDSIKALPEREQILMALYYEQEMNLKEIGAVMGVSESRVCQLHSQAISRMRSYLREHSW 240 Query: 241 TGVA 244 +GVA Sbjct: 241 SGVA 244 >ref|YP_001353773.1| RNA polymerase sigma factor for flagellar operon [Janthinobacterium sp. Marseille] gb|ABR88873.1| RNA polymerase sigma factor for flagellar operon [Janthinobacterium sp. Marseille] Length = 243 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 193/244 (79%), Positives = 219/244 (89%), Gaps = 1/244 (0%) Query: 1 MYNVKGKTAKNDLLQLHAALVKKLAHQMKAKLPPSVEVDDLIQAGMIGLLDAVNRYEETH 60 MY GK+ KN L+ HA LVKKLAHQMKAKLPPSVEVDDLIQAGMIGLLDAV+RYEETH Sbjct: 1 MYTAAGKSDKNHLVGEHAPLVKKLAHQMKAKLPPSVEVDDLIQAGMIGLLDAVSRYEETH 60 Query: 61 GAQFETYAVQRIRGAMLDELRSSDWLPRSIRQNTRKIEEAIHVLLQQLGRPPQEAEVATQ 120 GAQFETYAVQRIRGAMLDELRSSDW+PRS+RQN RKIE A++ L Q+LGRPP E+EVA Q Sbjct: 61 GAQFETYAVQRIRGAMLDELRSSDWMPRSMRQNMRKIEVAMNTLQQRLGRPPNESEVAKQ 120 Query: 121 LKLSLPEYQDMLTECGGHQLIYYEDFHDADGGHEHFLDRYQTRDTDDPLQNLINGGFRDA 180 LKLSL +YQD+L++ GGHQL+YYEDFHD++ +EHFLDRY T ++ DPLQNL+N GFR A Sbjct: 121 LKLSLADYQDLLSDGGGHQLVYYEDFHDSE-DNEHFLDRYCTDESPDPLQNLMNTGFRAA 179 Query: 181 VIDSIKALPEREKILMGLYYEQEMNLKEIGAVMGVSESRVCQLHSQAIARMRSTLREQAW 240 VI++I+ALPEREKILMGLYYEQEMNLKEIGAVMGV+ESRV QLHSQAIARMR+ LRE+AW Sbjct: 180 VIEAIQALPEREKILMGLYYEQEMNLKEIGAVMGVTESRVSQLHSQAIARMRANLREKAW 239 Query: 241 TGVA 244 TGVA Sbjct: 240 TGVA 243 >emb|CAL61487.2| RNA polymerase sigma factor for flagellar operon (Sigma-F factor) (Sigma-27) (Sigma-28) [Herminiimonas arsenicoxydans] Length = 243 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 189/244 (77%), Positives = 216/244 (88%), Gaps = 1/244 (0%) Query: 1 MYNVKGKTAKNDLLQLHAALVKKLAHQMKAKLPPSVEVDDLIQAGMIGLLDAVNRYEETH 60 MY G++ ++ L+ HA LVKKLAHQMKAKLPPSVEVDDLIQAGMIGLLDAV RYEETH Sbjct: 1 MYTAAGRSDRDHLVSEHAPLVKKLAHQMKAKLPPSVEVDDLIQAGMIGLLDAVGRYEETH 60 Query: 61 GAQFETYAVQRIRGAMLDELRSSDWLPRSIRQNTRKIEEAIHVLLQQLGRPPQEAEVATQ 120 GAQFETYAVQRIRGAMLDELRSSDW+PRS+RQN RKIE A++ L Q+LGRPP E+EVA Q Sbjct: 61 GAQFETYAVQRIRGAMLDELRSSDWMPRSMRQNMRKIEVAMNSLQQKLGRPPNESEVAKQ 120 Query: 121 LKLSLPEYQDMLTECGGHQLIYYEDFHDADGGHEHFLDRYQTRDTDDPLQNLINGGFRDA 180 LKLSL +YQD+L++ GGHQL+YYEDFHD++ +EHFLDRY T ++ DPLQNL+N GFR A Sbjct: 121 LKLSLADYQDLLSDGGGHQLVYYEDFHDSE-DNEHFLDRYCTDESPDPLQNLMNTGFRSA 179 Query: 181 VIDSIKALPEREKILMGLYYEQEMNLKEIGAVMGVSESRVCQLHSQAIARMRSTLREQAW 240 VI +I+ALPEREKILM LYYEQEMNLKEIGAVMGV+ESRV QLHSQAIARMR+ LRE+AW Sbjct: 180 VIAAIEALPEREKILMSLYYEQEMNLKEIGAVMGVTESRVSQLHSQAIARMRANLREKAW 239 Query: 241 TGVA 244 TGVA Sbjct: 240 TGVA 243 >ref|ZP_08273913.1| RNA polymerase sigma factor for flagellar operon [Oxalobacteraceae bacterium IMCC9480] gb|EGF32614.1| RNA polymerase sigma factor for flagellar operon [Oxalobacteraceae bacterium IMCC9480] Length = 244 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 188/244 (77%), Positives = 213/244 (87%) Query: 1 MYNVKGKTAKNDLLQLHAALVKKLAHQMKAKLPPSVEVDDLIQAGMIGLLDAVNRYEETH 60 MY GK+ KN LL HA LVK+LAHQMKAKLPPSVEVDDLIQAGMIGL DA+NRYE+TH Sbjct: 1 MYTPSGKSDKNHLLVQHAPLVKRLAHQMKAKLPPSVEVDDLIQAGMIGLFDAINRYEDTH 60 Query: 61 GAQFETYAVQRIRGAMLDELRSSDWLPRSIRQNTRKIEEAIHVLLQQLGRPPQEAEVATQ 120 GAQFETYAVQRIRG+MLDELRSSDWLPRS+RQN RKIE A+ L Q+LGR P EAEVA Sbjct: 61 GAQFETYAVQRIRGSMLDELRSSDWLPRSMRQNMRKIEVAMQALQQKLGRAPLEAEVAKH 120 Query: 121 LKLSLPEYQDMLTECGGHQLIYYEDFHDADGGHEHFLDRYQTRDTDDPLQNLINGGFRDA 180 +KLSL EYQ++L E GGHQL+YYEDFHD+ G+EHFLDRY T +D+PLQ+L+N GFRDA Sbjct: 121 MKLSLAEYQNLLGEGGGHQLVYYEDFHDSSEGNEHFLDRYCTDLSDNPLQSLLNAGFRDA 180 Query: 181 VIDSIKALPEREKILMGLYYEQEMNLKEIGAVMGVSESRVCQLHSQAIARMRSTLREQAW 240 VI +I+ALPEREKILMGLYYEQEMNLKEIGAV+GV+ESR+ QLHSQAIARMR+ LRE+ W Sbjct: 181 VIRAIEALPEREKILMGLYYEQEMNLKEIGAVLGVTESRISQLHSQAIARMRAFLREKTW 240 Query: 241 TGVA 244 TGVA Sbjct: 241 TGVA 244 >ref|YP_001099614.1| sigma F (sigma 28) factor of RNA polymerase, transcription of late flagellar genes (class 3a and 3b operons) [Herminiimonas arsenicoxydans] Length = 216 Score = 363 bits (933), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 175/217 (80%), Positives = 197/217 (90%), Gaps = 1/217 (0%) Query: 28 MKAKLPPSVEVDDLIQAGMIGLLDAVNRYEETHGAQFETYAVQRIRGAMLDELRSSDWLP 87 MKAKLPPSVEVDDLIQAGMIGLLDAV RYEETHGAQFETYAVQRIRGAMLDELRSSDW+P Sbjct: 1 MKAKLPPSVEVDDLIQAGMIGLLDAVGRYEETHGAQFETYAVQRIRGAMLDELRSSDWMP 60 Query: 88 RSIRQNTRKIEEAIHVLLQQLGRPPQEAEVATQLKLSLPEYQDMLTECGGHQLIYYEDFH 147 RS+RQN RKIE A++ L Q+LGRPP E+EVA QLKLSL +YQD+L++ GGHQL+YYEDFH Sbjct: 61 RSMRQNMRKIEVAMNSLQQKLGRPPNESEVAKQLKLSLADYQDLLSDGGGHQLVYYEDFH 120 Query: 148 DADGGHEHFLDRYQTRDTDDPLQNLINGGFRDAVIDSIKALPEREKILMGLYYEQEMNLK 207 D++ +EHFLDRY T ++ DPLQNL+N GFR AVI +I+ALPEREKILM LYYEQEMNLK Sbjct: 121 DSE-DNEHFLDRYCTDESPDPLQNLMNTGFRSAVIAAIEALPEREKILMSLYYEQEMNLK 179 Query: 208 EIGAVMGVSESRVCQLHSQAIARMRSTLREQAWTGVA 244 EIGAVMGV+ESRV QLHSQAIARMR+ LRE+AWTGVA Sbjct: 180 EIGAVMGVTESRVSQLHSQAIARMRANLREKAWTGVA 216