BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0078.p         (134 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775438.1| flagellar biosynthesis/type III secretory pa...   142   2e-32
ref|YP_001353105.1| flagella synthesis protein [Janthinobacteriu...    94   7e-18
ref|ZP_08272749.1| Flagellar biosynthesis protein flgN [Oxalobac...    90   1e-16
ref|YP_001100178.1| putative flagella synthesis protein FlgN [He...    90   1e-16
ref|YP_003048389.1| FlgN family protein [Methylotenera mobilis J...    84   8e-15

>ref|YP_003775438.1| flagellar biosynthesis/type III secretory pathway chaperone protein
           [Herbaspirillum seropedicae SmR1]
 gb|ADJ63530.1| flagellar biosynthesis/type III secretory pathway chaperone protein
           [Herbaspirillum seropedicae SmR1]
          Length = 152

 Score =  142 bits (357), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 72/135 (53%), Positives = 102/135 (75%), Gaps = 3/135 (2%)

Query: 1   VAALQQEQDLLSGNGDADKIPEIINDKANIVANMATLADQRHKALAALGFTAGENGMQSW 60
           V  L+QEQ LL+ +   + + E+I++KA IVA+MATLA  RH  L  LG++  E GMQ W
Sbjct: 18  VEKLRQEQALLA-DATPEGLTEVISEKATIVADMATLAGNRHALLGQLGYSEDEAGMQKW 76

Query: 61  IEQHGSAEDKQVWEELFALAQ-SRELNRLNGLLIGKQMAINQNAMNILQGKSN-GSFYGP 118
           + +HGS  D++ W  LF LAQ ++ELNR+NGLLIGK++++NQ+A+ ILQGK+  G+FYGP
Sbjct: 77  MNEHGSETDREHWAALFELAQDAKELNRVNGLLIGKKISLNQSALTILQGKTGAGNFYGP 136

Query: 119 DGQSSLRSSGRPLGI 133
           DGQ+S+ +SGR LG+
Sbjct: 137 DGQNSISASGRRLGV 151


>ref|YP_001353105.1| flagella synthesis protein [Janthinobacterium sp. Marseille]
 gb|ABR88357.1| flagella synthesis protein [Janthinobacterium sp. Marseille]
          Length = 158

 Score = 94.0 bits (232), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 60/134 (44%), Positives = 81/134 (60%), Gaps = 4/134 (2%)

Query: 4   LQQEQDLLSGNGDADKIPEIINDKANIVANMATLADQRHKALAALGFTAGENGMQSWIEQ 63
           LQ EQ+ L    D + I  +   KA   A MA LA+ RH ALAA GF   E+ M+ W+E 
Sbjct: 26  LQLEQEHLIA-ADVEGITALTEAKAKAAARMAELANWRHNALAAAGFEPTESSMKLWLES 84

Query: 64  HGSAEDKQVWEELFALAQ-SRELNRLNGLLIGKQMAINQNAMNILQ-GKSNG-SFYGPDG 120
             S   ++ W EL  L + ++ELNR+NG+LI KQM  NQN +NILQ G   G + YGP+G
Sbjct: 85  SQSKTARKSWNELVELVEVAKELNRVNGILINKQMVRNQNVLNILQHGTVQGNNVYGPNG 144

Query: 121 QSSLRSSGRPLGIG 134
           Q++ +S GR +  G
Sbjct: 145 QTASKSVGRHIVAG 158


>ref|ZP_08272749.1| Flagellar biosynthesis protein flgN [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF33748.1| Flagellar biosynthesis protein flgN [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 155

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/117 (45%), Positives = 73/117 (62%), Gaps = 4/117 (3%)

Query: 20  IPEIINDKANIVANMATLADQRHKALAALGFTAGENGMQSWIEQHGSAEDKQVWEELFAL 79
           +PE+I  KA  V  +  L   RH  LAA GF A E+GM+ W+  H  ++ +  W  L AL
Sbjct: 41  LPELIQAKAEAVTRLTALTKARHALLAAAGFAASESGMRDWVAAHQPSDTR--WTALLAL 98

Query: 80  -AQSRELNRLNGLLIGKQMAINQNAMNILQGKS-NGSFYGPDGQSSLRSSGRPLGIG 134
            A++RE+NR+NG+LIG+ M  NQ  +NILQGK+   + YG DGQS+    GR L +G
Sbjct: 99  GAEAREMNRINGMLIGRHMMRNQTELNILQGKTQRNNLYGADGQSTGMGRGRGLAVG 155


>ref|YP_001100178.1| putative flagella synthesis protein FlgN [Herminiimonas
           arsenicoxydans]
 emb|CAL62054.1| putative flagella synthesis protein FlgN-like [Herminiimonas
           arsenicoxydans]
          Length = 159

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/116 (44%), Positives = 68/116 (58%), Gaps = 4/116 (3%)

Query: 23  IINDKANIVANMATLADQRHKALAALGFTAGENGMQSWI-EQHGSAEDKQVWEELFALAQ 81
           +   KA    +MA LA +RH  L   GF A E GMQ+W+     SA     W EL ALA+
Sbjct: 44  LTEPKAKAALHMAELAAKRHALLGTAGFEANETGMQAWLGSPAASATANTSWHELIALAE 103

Query: 82  S-RELNRLNGLLIGKQMAINQNAMNILQGKS--NGSFYGPDGQSSLRSSGRPLGIG 134
           + +ELNR+NG LI KQM  NQN +NILQ  S    + YGPDGQ++ ++  R +  G
Sbjct: 104 AGKELNRVNGTLINKQMVRNQNVLNILQHGSVQGNNVYGPDGQTASKTMSRHIVAG 159


>ref|YP_003048389.1| FlgN family protein [Methylotenera mobilis JLW8]
 gb|ACT47862.1| FlgN family protein [Methylotenera mobilis JLW8]
          Length = 157

 Score = 84.0 bits (206), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 74/131 (56%), Gaps = 3/131 (2%)

Query: 1   VAALQQEQDLLSGNGDADKIPEIINDKANIVANMATLADQRHKALAALGFTAGENGMQSW 60
           VA L++EQ  L    D   I  ++ +K+ ++  +   A  R++ L A GF + E GM +W
Sbjct: 23  VALLEREQAHLV-KADVAAIEAVLEEKSLLLQRLNLAAKSRYQQLQAHGFQSNEAGMTAW 81

Query: 61  IEQHGSAEDKQVWEEL-FALAQSRELNRLNGLLIGKQMAINQNAMNILQGKSNG-SFYGP 118
           +E     E K  W +   +LAQ++ELNRLNG+LI K    NQ  +N LQG ++  S YGP
Sbjct: 82  VETQAKKEIKAAWMQFQKSLAQAKELNRLNGVLISKHFNRNQELLNHLQGNNDANSVYGP 141

Query: 119 DGQSSLRSSGR 129
           DGQ+  +   R
Sbjct: 142 DGQAKPKGPSR 152