BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0075.p         (140 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775441.1| Flagellar basal-body rod protein FlgB [Herba...   207   4e-52
ref|ZP_08272752.1| Flagellar basal-body rod protein FlgB [Oxalob...   185   2e-45
ref|YP_001353108.1| FlgB flagellar basal body protein [Janthinob...   181   5e-44
ref|YP_001100175.1| basal-body rod protein [Herminiimonas arseni...   164   5e-39
ref|YP_003523192.1| flagellar basal-body rod protein FlgB [Sider...   155   2e-36

>ref|YP_003775441.1| Flagellar basal-body rod protein FlgB [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ63533.1| Flagellar basal-body rod FlgB protein [Herbaspirillum seropedicae
           SmR1]
          Length = 142

 Score =  207 bits (527), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 97/142 (68%), Positives = 117/142 (82%), Gaps = 2/142 (1%)

Query: 1   MAAKLDDYLRFNETALNLRAQRQQLLASNIANADTPNYKARDIDFAKTLQGAMAGKSSTV 60
           M +KLDD+ RFNE A+NLRAQRQQ+LASNIANADTPNYKARD++FA  L+ A+  K++ +
Sbjct: 1   MVSKLDDFFRFNEMAMNLRAQRQQVLASNIANADTPNYKARDVNFADALKNALDNKATAM 60

Query: 61  PPVELARTSSAHISGKA--TGDGGIGGSPLLYRKETQSSVDGNTVDMDVERNQFTDNAVR 118
           PP+ELART++ H+ G A   G G IGGSPLLYR  TQ SVDGNTVD+DVERN+F DN +R
Sbjct: 61  PPLELARTAATHVPGTAPENGPGSIGGSPLLYRTVTQGSVDGNTVDLDVERNEFVDNGLR 120

Query: 119 YEAGITAVNAQIKGLLAAIQPG 140
           YEAG+TAVN QIK +L AIQPG
Sbjct: 121 YEAGVTAVNGQIKAMLNAIQPG 142


>ref|ZP_08272752.1| Flagellar basal-body rod protein FlgB [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF33751.1| Flagellar basal-body rod protein FlgB [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 150

 Score =  185 bits (469), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 93/149 (62%), Positives = 110/149 (73%), Gaps = 11/149 (7%)

Query: 1   MAAKLDDYLRFNETALNLRAQRQQLLASNIANADTPNYKARDIDFAKTLQGAMA------ 54
           M  KLDDYLRFNETALNLR QRQQL+ASNIANADTPNYKARDIDF   ++ A+A      
Sbjct: 1   MIGKLDDYLRFNETALNLRGQRQQLIASNIANADTPNYKARDIDFNSAMKSALARSGTAT 60

Query: 55  ---GKSSTVPPVELARTSSAHISGKA--TGDGGIGGSPLLYRKETQSSVDGNTVDMDVER 109
                ++ V P ELARTS+ H+S K+   G+ G+ G PLLYR   Q +VDGNTVDMD ER
Sbjct: 61  GATMATAAVQPAELARTSTTHLSAKSGHGGNSGVNGVPLLYRNIQQGAVDGNTVDMDAER 120

Query: 110 NQFTDNAVRYEAGITAVNAQIKGLLAAIQ 138
           N F DNA+RYEAGIT ++ QIK +L+AIQ
Sbjct: 121 NAFADNAIRYEAGITMISGQIKSMLSAIQ 149


>ref|YP_001353108.1| FlgB flagellar basal body protein [Janthinobacterium sp. Marseille]
 gb|ABR88754.1| FlgB flagellar basal body protein [Janthinobacterium sp. Marseille]
          Length = 139

 Score =  181 bits (458), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 88/139 (63%), Positives = 107/139 (76%), Gaps = 3/139 (2%)

Query: 1   MAAKLDDYLRFNETALNLRAQRQQLLASNIANADTPNYKARDIDFAKTLQGAMA-GKSST 59
           M  KLDD LRF ETAL+LR QRQQ+LASNIANADTPN+KARD+DF K LQGA+A  KS  
Sbjct: 1   MIGKLDDMLRFQETALSLRGQRQQILASNIANADTPNFKARDVDFNKALQGALARSKSGA 60

Query: 60  VPPVELARTSSAHISGKATGDGGIGGSPLLYRKETQSSVDGNTVDMDVERNQFTDNAVRY 119
             P EL +TS+ H+S K      +GG+PLLY    Q ++DGNTVDMDV+RNQFTDNA+RY
Sbjct: 61  AAPAELVKTSTTHLSSKTLPT--LGGAPLLYANTAQGNIDGNTVDMDVQRNQFTDNALRY 118

Query: 120 EAGITAVNAQIKGLLAAIQ 138
           E G+T V+++IKG+  AIQ
Sbjct: 119 EVGLTLVSSKIKGMFTAIQ 137


>ref|YP_001100175.1| basal-body rod protein [Herminiimonas arsenicoxydans]
 emb|CAL62051.1| Flagellar basal-body rod protein FlgB (Putative proximal rod
           protein) [Herminiimonas arsenicoxydans]
          Length = 139

 Score =  164 bits (414), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 83/139 (59%), Positives = 100/139 (71%), Gaps = 3/139 (2%)

Query: 1   MAAKLDDYLRFNETALNLRAQRQQLLASNIANADTPNYKARDIDFAKTLQ-GAMAGKSST 59
           M  KLDD +RF ETAL+LRAQRQQLLASNIANADTPN+KARDIDF K LQ          
Sbjct: 1   MIGKLDDLMRFQETALSLRAQRQQLLASNIANADTPNFKARDIDFNKALQGAIAKSAGGA 60

Query: 60  VPPVELARTSSAHISGKATGDGGIGGSPLLYRKETQSSVDGNTVDMDVERNQFTDNAVRY 119
             P  L +T++AH+S        IGG+PLLY    Q ++DGNTVDMDV+RNQFTDNA+RY
Sbjct: 61  AAPAALVKTTTAHLSSNT--HATIGGAPLLYSNTQQGNIDGNTVDMDVQRNQFTDNAMRY 118

Query: 120 EAGITAVNAQIKGLLAAIQ 138
           E  +T  +++IKG+L AIQ
Sbjct: 119 EVSVTLASSKIKGMLTAIQ 137


>ref|YP_003523192.1| flagellar basal-body rod protein FlgB [Sideroxydans lithotrophicus
           ES-1]
 gb|ADE10805.1| flagellar basal-body rod protein FlgB [Sideroxydans lithotrophicus
           ES-1]
          Length = 134

 Score =  155 bits (392), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 77/138 (55%), Positives = 105/138 (76%), Gaps = 5/138 (3%)

Query: 1   MAAKLDDYLRFNETALNLRAQRQQLLASNIANADTPNYKARDIDFAKTLQGAMAGKSSTV 60
           M++++D  L+F +TALNLRA RQ+L+ASNIANADTPNYKA+DIDFA  LQGA++G     
Sbjct: 1   MSSRIDQMLQFQQTALNLRAARQELIASNIANADTPNYKAKDIDFASALQGALSGSGEK- 59

Query: 61  PPVELARTSSAHISGKATGDGGIGGSPLLYRKETQSSVDGNTVDMDVERNQFTDNAVRYE 120
             +++A TS  H++G  TG+  + G+P+LYRK  Q S DGNTVDMDVER QF DNA+RYE
Sbjct: 60  --LQVAVTSPLHLAG-TTGE-SVMGAPVLYRKPLQPSADGNTVDMDVERAQFADNALRYE 115

Query: 121 AGITAVNAQIKGLLAAIQ 138
           A +  ++  +K +L+A+Q
Sbjct: 116 ASVKFISDDVKDVLSALQ 133