BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0073.p (239 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775443.1| flagellar basal-body rod modification protei... 329 2e-88 ref|ZP_08272754.1| Flagellar basal-body rod modification protein... 214 9e-54 ref|YP_001353110.1| flagellar basal body rod modification protei... 211 9e-53 ref|YP_001100173.1| flagellar basal body rod modification protei... 209 4e-52 ref|YP_004039222.1| flagellar hook capping protein [Methylovorus... 205 4e-51 >ref|YP_003775443.1| flagellar basal-body rod modification protein [Herbaspirillum seropedicae SmR1] gb|ADJ63535.1| flagellar basal-body rod modification protein [Herbaspirillum seropedicae SmR1] Length = 240 Score = 329 bits (843), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 176/241 (73%), Positives = 209/241 (86%), Gaps = 3/241 (1%) Query: 1 MTTVSNDLLSSMNGTSTSTSNTSS--LNDNSPEAIQNRFLKLLTVQMQNQDPTNPMDNSQ 58 M TVSNDLL++MNGTS+S+S ++S L DNSP+AIQNRFL LL QM+NQDP NPMDNSQ Sbjct: 1 MATVSNDLLTAMNGTSSSSSTSNSSGLTDNSPDAIQNRFLTLLMAQMKNQDPNNPMDNSQ 60 Query: 59 LTTQLAQLSTVSGISQLNTTLASLMSNLGSAQSLQAANMIGHSVLAPGNNLTLTSDTTKA 118 LT+Q+AQLSTVSGISQLN+TLA+LM NL S+Q+L +ANMIGHSVLAPGN++ LTS+TTK Sbjct: 61 LTSQMAQLSTVSGISQLNSTLATLMGNLNSSQALSSANMIGHSVLAPGNSVQLTSETTKD 120 Query: 119 ADGTETTTQKAVFGVQLGANADSIKVTIRDATTGAVVRQMDLGSQAAGTVPVIWDGTNDA 178 A G + T Q AV GV L NA S+ VT++D +TGAVVR MDLG+QA+G VPVIWDGTNDA Sbjct: 121 ASGNDVTKQHAVMGVNLATNASSVVVTVKD-STGAVVRTMDLGTQASGVVPVIWDGTNDA 179 Query: 179 GTKAADGQYTFTVAATSAGTAVDAAALSFGTVASVSTGADGVKLNVSNIGTIKPTDVIQI 238 G+KAADG YTF+VAA++ GTAV+A AL+FGTVASVST ADG+KLNVSNIGTIKPTDV+QI Sbjct: 180 GSKAADGNYTFSVAASNNGTAVNATALAFGTVASVSTAADGIKLNVSNIGTIKPTDVVQI 239 Query: 239 L 239 L Sbjct: 240 L 240 >ref|ZP_08272754.1| Flagellar basal-body rod modification protein FlgD [Oxalobacteraceae bacterium IMCC9480] gb|EGF33753.1| Flagellar basal-body rod modification protein FlgD [Oxalobacteraceae bacterium IMCC9480] Length = 224 Score = 214 bits (545), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 129/245 (52%), Positives = 172/245 (70%), Gaps = 27/245 (11%) Query: 1 MTTVSND-----LLSSMNGTSTSTSNTSSLNDNSPEAIQNRFLKLLTVQMQNQDPTNPMD 55 MTT++N+ LL++MN ++T+++++S+ A Q+RF+KLL QM+NQDP NP+D Sbjct: 1 MTTITNNVASPALLATMNPSATASASSSA------SATQDRFMKLLVTQMKNQDPLNPLD 54 Query: 56 NSQLTTQLAQLSTVSGISQLNTTLASLMSNLGSAQSLQAANMIGHSVLAPGNNLTLTSDT 115 N+Q+T+QLAQLSTVSGI ++NTTL S++++ S ++QAA MIGH VLAPG + L S Sbjct: 55 NAQVTSQLAQLSTVSGIDKMNTTLESMIASQQSGSAVQAAGMIGHGVLAPGKQMALASG- 113 Query: 116 TKAADGTETTTQKAVFGVQLGANADSIKVTIRDATTGAVVRQMDLGSQAAGTVPVIWDGT 175 AVFGV L A+A+ +KVT+RD G V +DLG++ AGT+ + WDG Sbjct: 114 ------------NAVFGVDLAASAEKVKVTVRD-VNGVAVHTIDLGAKDAGTLALAWDGV 160 Query: 176 NDAGTKAADGQYTFTVAATSAGTA-VDAAALSFGTVASVSTGADGVKLNVSNIGTIKPTD 234 D G+KAADG YTF VAA SAGTA V A AL+FG V+SVST A GVKLNV+N+G I TD Sbjct: 161 KDDGSKAADGTYTFDVAA-SAGTAPVSATALAFGQVSSVSTSATGVKLNVTNLGAIGMTD 219 Query: 235 VIQIL 239 V QIL Sbjct: 220 VRQIL 224 >ref|YP_001353110.1| flagellar basal body rod modification protein [Janthinobacterium sp. Marseille] gb|ABR88480.1| FlgD flagellar hook capping protein [Janthinobacterium sp. Marseille] Length = 225 Score = 211 bits (536), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 117/238 (49%), Positives = 154/238 (64%), Gaps = 21/238 (8%) Query: 2 TTVSNDLLSSMNGTSTSTSNTSSLNDNSPEAIQNRFLKLLTVQMQNQDPTNPMDNSQLTT 61 T + LL MNG + S +T+ E Q+RFLKLL QMQNQDP NP+DN+Q+T+ Sbjct: 9 TVLPQSLLDQMNGAAASKKSTA-------EEAQDRFLKLLVTQMQNQDPLNPLDNAQVTS 61 Query: 62 QLAQLSTVSGISQLNTTLASLMSNLGSAQSLQAANMIGHSVLAPGNNLTLTSDTTKAADG 121 QLAQLSTV+GI +LN TL SLM N SAQ LQA+NMI H VLAPG+ L L A+G Sbjct: 62 QLAQLSTVTGIDKLNGTLESLMGNYQSAQLLQASNMIDHGVLAPGSQLAL-------AEG 114 Query: 122 TETTTQKAVFGVQLGANADSIKVTIRDATTGAVVRQMDLGSQAAGTVPVIWDGTNDAGTK 181 KA+FGV+ ++ D+ ++ I+D + G VV+ +D+ +Q AG P++WDGT GTK Sbjct: 115 ------KAIFGVEFPSDVDAGQIVIKD-SAGVVVQTIDMPAQKAGATPLLWDGTKADGTK 167 Query: 182 AADGQYTFTVAATSAGTAVDAAALSFGTVASVSTGADGVKLNVSNIGTIKPTDVIQIL 239 AADG YTF V + G V A AL FG V +VS+ A+GV LNV +G + D+ Q+L Sbjct: 168 AADGNYTFEVKGSLGGKDVKATALQFGVVTTVSSSANGVLLNVPGLGGLTLADIRQVL 225 >ref|YP_001100173.1| flagellar basal body rod modification protein [Herminiimonas arsenicoxydans] emb|CAL62049.1| Basal-body rod modification protein FlgD [Herminiimonas arsenicoxydans] Length = 225 Score = 209 bits (531), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 116/246 (47%), Positives = 157/246 (63%), Gaps = 28/246 (11%) Query: 1 MTTVSND-------LLSSMNGTSTSTSNTSSLNDNSPEAIQNRFLKLLTVQMQNQDPTNP 53 MT V+N+ LL MNGTS + +T+ E Q+RFL LL QM+NQDP NP Sbjct: 1 MTAVNNNTTVLPQALLDQMNGTSAAKKSTA-------EEAQDRFLTLLVTQMKNQDPLNP 53 Query: 54 MDNSQLTTQLAQLSTVSGISQLNTTLASLMSNLGSAQSLQAANMIGHSVLAPGNNLTLTS 113 +DN+Q+T+QLAQLSTV+GI +LN TL S+M + S Q+LQAANMIGH VLAPG+N++LT Sbjct: 54 LDNAQVTSQLAQLSTVTGIDKLNGTLESMMGSYQSNQALQAANMIGHGVLAPGSNISLTE 113 Query: 114 DTTKAADGTETTTQKAVFGVQLGANADSIKVTIRDATTGAVVRQMDLGSQAAGTVPVIWD 173 + K + GV+ + D+ ++ ++DA G V+ +DLG+ AGTVP++WD Sbjct: 114 N-------------KGLMGVEFPQDVDAAEILVKDA-AGNVIHTIDLGAHPAGTVPLLWD 159 Query: 174 GTNDAGTKAADGQYTFTVAATSAGTAVDAAALSFGTVASVSTGADGVKLNVSNIGTIKPT 233 GT G+KA DG Y F V A+ AG V A AL FG V +VST GV++NV +G + Sbjct: 160 GTLADGSKAEDGSYQFEVKASLAGKPVSANALQFGIVTTVSTSPGGVQINVPGLGALNLA 219 Query: 234 DVIQIL 239 D+ QIL Sbjct: 220 DIRQIL 225 >ref|YP_004039222.1| flagellar hook capping protein [Methylovorus sp. MP688] gb|ADQ83986.1| flagellar hook capping protein [Methylovorus sp. MP688] Length = 218 Score = 205 bits (522), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 112/239 (46%), Positives = 160/239 (66%), Gaps = 21/239 (8%) Query: 1 MTTVSNDLLSSMNGTSTSTSNTSSLNDNSPEAIQNRFLKLLTVQMQNQDPTNPMDNSQLT 60 MTT+SNDLL++MN +S+ +++S +Q+RF+ LL QM++QDP NPMDN+Q+T Sbjct: 1 MTTISNDLLTTMNTRKSSSGSSAS-------DVQDRFMTLLITQMKSQDPLNPMDNAQVT 53 Query: 61 TQLAQLSTVSGISQLNTTLASLMSNLGSAQSLQAANMIGHSVLAPGNNLTLTSDTTKAAD 120 +QLAQLSTV+GI +LNTT+ S++SN+ S+Q+ QA+NMIG VL G++LTLT Sbjct: 54 SQLAQLSTVTGIDKLNTTMESMISNVQSSQTYQASNMIGRYVLTKGDSLTLTE------- 106 Query: 121 GTETTTQKAVFGVQLGANADSIKVTIRDATTGAVVRQMDLGSQAAGTVPVIWDGTNDAGT 180 K+ G+ L AD + VTI+D+ G +RQ+ LG Q AG +P+ WDG D G+ Sbjct: 107 ------SKSYLGINLPVGADKVTVTIKDS-AGNQMRQLTLGKQEAGVLPLSWDGYKDDGS 159 Query: 181 KAADGQYTFTVAATSAGTAVDAAALSFGTVASVSTGADGVKLNVSNIGTIKPTDVIQIL 239 KAADG Y F VAAT+A T+V A LS+ V SVS + G+KLN+ + +I DV+++ Sbjct: 160 KAADGNYKFEVAATTANTSVTATPLSYDQVMSVSNSSSGIKLNLGKLDSIGIDDVVEVF 218