BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0065.p         (126 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775450.1| flagellar hook-associated FlgK protein [Herb...   195   2e-48
ref|YP_315386.1| flagellar hook-associated protein FlgK [Thiobac...   158   3e-37
ref|YP_003048377.1| flagellar hook-associated protein FlgK [Meth...   145   2e-33
ref|ZP_08272761.1| Flagellar hook-associated protein flgK [Oxalo...   142   1e-32
ref|YP_001353117.1| flagellar hook-associated protein FlgK [Jant...   138   3e-31

>ref|YP_003775450.1| flagellar hook-associated FlgK protein [Herbaspirillum seropedicae
           SmR1]
 emb|CAP19667.1| flagellar hook-filament junction protein 1 [Herbaspirillum
           seropedicae]
 gb|ADJ63542.1| flagellar hook-associated FlgK protein [Herbaspirillum seropedicae
           SmR1]
          Length = 778

 Score =  195 bits (496), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 105/123 (85%), Positives = 113/123 (91%)

Query: 1   MATNIFSIGQSALAAAQAAQATTSHNISNATTPGYNRQVVVQSTAGGINYGYGFVGQGTQ 60
           MATNIFSIGQSAL AA AAQATTSHNISN  TPGYNRQ VVQS+AGGINYGYGFVGQGTQ
Sbjct: 1   MATNIFSIGQSALQAAMAAQATTSHNISNGKTPGYNRQEVVQSSAGGINYGYGFVGQGTQ 60

Query: 61  VAEIKRVYNDFLNKQVMASQTTASSLDSYLSQISQLNNLVADTSAGLSPALQDFFKSMQN 120
           V EIKRVYNDFLNKQ +ASQT+ASSLDSY S+ISQ+NN+VADT AGLSPALQDFF ++QN
Sbjct: 61  VNEIKRVYNDFLNKQALASQTSASSLDSYYSEISQINNMVADTKAGLSPALQDFFSAVQN 120

Query: 121 LAS 123
           LAS
Sbjct: 121 LAS 123


>ref|YP_315386.1| flagellar hook-associated protein FlgK [Thiobacillus denitrificans
           ATCC 25259]
 gb|AAZ97581.1| Flagellar hook-associated protein [Thiobacillus denitrificans ATCC
           25259]
          Length = 629

 Score =  158 bits (399), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 75/123 (60%), Positives = 98/123 (79%)

Query: 1   MATNIFSIGQSALAAAQAAQATTSHNISNATTPGYNRQVVVQSTAGGINYGYGFVGQGTQ 60
           MAT+I  IGQSALAAAQA  +TT HNI+NA+TPGY+RQVVVQ  A   N+G+GF+GQGTQ
Sbjct: 1   MATSILGIGQSALAAAQAGLSTTGHNIANASTPGYSRQVVVQGAALPQNFGFGFMGQGTQ 60

Query: 61  VAEIKRVYNDFLNKQVMASQTTASSLDSYLSQISQLNNLVADTSAGLSPALQDFFKSMQN 120
           +  +KRVYN++L  QV  +Q + S LDSY +QI Q++NL+AD ++GLSP+LQDFF  +Q 
Sbjct: 61  IETVKRVYNEYLGVQVQTAQASKSGLDSYYAQIKQIDNLLADPASGLSPSLQDFFSGIQE 120

Query: 121 LAS 123
           LA+
Sbjct: 121 LAA 123


>ref|YP_003048377.1| flagellar hook-associated protein FlgK [Methylotenera mobilis JLW8]
 gb|ACT47850.1| flagellar hook-associated protein FlgK [Methylotenera mobilis JLW8]
          Length = 657

 Score =  145 bits (366), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/123 (53%), Positives = 101/123 (82%)

Query: 1   MATNIFSIGQSALAAAQAAQATTSHNISNATTPGYNRQVVVQSTAGGINYGYGFVGQGTQ 60
           MA+NI +IG+SALAAAQ   +TT HNI+NA+TPGY+RQVVVQ+ A   N+GYGFVGQGT+
Sbjct: 1   MASNILNIGKSALAAAQVGISTTGHNIANASTPGYSRQVVVQAAAQSQNFGYGFVGQGTE 60

Query: 61  VAEIKRVYNDFLNKQVMASQTTASSLDSYLSQISQLNNLVADTSAGLSPALQDFFKSMQN 120
           +A + R++ND L  Q + SQ+ +SS ++YLSQ++ +N+++++++AGL+PA+ DFF ++Q 
Sbjct: 61  IASVTRIFNDILAAQAVRSQSNSSSANTYLSQMTSINDMLSNSTAGLNPAMSDFFGAVQK 120

Query: 121 LAS 123
           L++
Sbjct: 121 LSA 123


>ref|ZP_08272761.1| Flagellar hook-associated protein flgK [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF33760.1| Flagellar hook-associated protein flgK [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 644

 Score =  142 bits (359), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 69/120 (57%), Positives = 94/120 (78%)

Query: 4   NIFSIGQSALAAAQAAQATTSHNISNATTPGYNRQVVVQSTAGGINYGYGFVGQGTQVAE 63
           NI S+GQS L AAQ    TT HNI+NA TPGY+RQVV+Q++AGG + G GFVGQGT VA 
Sbjct: 3   NILSVGQSGLLAAQLGVTTTGHNIANAATPGYSRQVVIQTSAGGQSSGDGFVGQGTTVAS 62

Query: 64  IKRVYNDFLNKQVMASQTTASSLDSYLSQISQLNNLVADTSAGLSPALQDFFKSMQNLAS 123
           I+R+Y+ +   +V A+QT+ +SLD+Y +Q+SQ+NNL+AD+S GLSP L +FF ++Q LA+
Sbjct: 63  IQRIYDAYTATRVNAAQTSKASLDAYSTQVSQINNLLADSSTGLSPTLSNFFNNVQGLAA 122


>ref|YP_001353117.1| flagellar hook-associated protein FlgK [Janthinobacterium sp.
           Marseille]
 gb|ABR88628.1| FlgK flagellar hook-associated protein [Janthinobacterium sp.
           Marseille]
          Length = 647

 Score =  138 bits (347), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 64/120 (53%), Positives = 94/120 (78%), Gaps = 1/120 (0%)

Query: 3   TNIFSIGQSALAAAQAAQATTSHNISNATTPGYNRQVVVQSTAGGINY-GYGFVGQGTQV 61
           +N+ SI +S LAAAQA  ATT HNI+N  TPGY+RQ+V+QS+ GG N  G G++G GT V
Sbjct: 2   SNLLSIAKSGLAAAQAGVATTGHNIANEKTPGYSRQLVIQSSLGGQNLTGGGYIGNGTNV 61

Query: 62  AEIKRVYNDFLNKQVMASQTTASSLDSYLSQISQLNNLVADTSAGLSPALQDFFKSMQNL 121
             +KR++NDFL  QV+A+Q++ S LD+Y +Q++++NN++AD+S GL+P +Q FFK +Q+L
Sbjct: 62  DSVKRIFNDFLAAQVVAAQSSTSQLDTYYAQMNKVNNMLADSSVGLAPVIQSFFKGIQDL 121