BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0059.p (268 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775457.1| flagellar biosynthetic protein FliP [Herbasp... 372 e-101 ref|ZP_08272766.1| Flagellar biosynthesis protein fliP [Oxalobac... 366 2e-99 ref|YP_001353121.1| flagellar biosynthesis protein FliP [Janthin... 360 1e-97 gb|AAV68366.1| FliP [Herminiimonas arsenicoxydans] 357 1e-96 ref|YP_001100162.1| flagellar biosynthesis protein FliP [Hermini... 357 1e-96 >ref|YP_003775457.1| flagellar biosynthetic protein FliP [Herbaspirillum seropedicae SmR1] gb|ADJ63549.1| flagellar biosynthetic protein FliP precursor protein [Herbaspirillum seropedicae SmR1] Length = 244 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 195/225 (86%), Positives = 210/225 (93%) Query: 44 QQGLPAFTSTPAPGGGQTYNLSIQTMLLLTSLSFIPAALLMMTCFTRIVIVLSLLRQALG 103 QQG+PA S PAPGGG Y+L IQTMLLLTSLSF+PAALLMMTCFTRIVIVLSLLRQALG Sbjct: 20 QQGIPALNSMPAPGGGTNYSLPIQTMLLLTSLSFLPAALLMMTCFTRIVIVLSLLRQALG 79 Query: 104 TQSTPPTQVLVGLSLFLTLFVMGPVFDKIYVDAYQPFADNKISMIDAMEKGAAPLKEFML 163 TQSTPPTQVLVGLSLFLT FVM PVFD+IY DAYQPFA+NKI M++A++KGA PLKEFML Sbjct: 80 TQSTPPTQVLVGLSLFLTFFVMSPVFDRIYTDAYQPFAENKIQMMEALDKGAQPLKEFML 139 Query: 164 KQTRQSDLALYVKLSHSPDLQGPEDVPLRLLIPAFITSELKTAFQISFAIFIPFLIIDMV 223 KQTR+SDLALYVKLS P LQGPEDVPLRLL+PAF+TSELKTAFQI FAIF+PFLIIDMV Sbjct: 140 KQTRESDLALYVKLSRGPALQGPEDVPLRLLVPAFVTSELKTAFQIGFAIFLPFLIIDMV 199 Query: 224 VASILMSMGMMMMSPAIVSLPFKLMLFVLVDGWQLLIGSLAESFY 268 VASILMSMGMMMMSPA+VSLPFKLMLFVLVDGWQLLIGSLA+SFY Sbjct: 200 VASILMSMGMMMMSPALVSLPFKLMLFVLVDGWQLLIGSLAQSFY 244 >ref|ZP_08272766.1| Flagellar biosynthesis protein fliP [Oxalobacteraceae bacterium IMCC9480] gb|EGF33765.1| Flagellar biosynthesis protein fliP [Oxalobacteraceae bacterium IMCC9480] Length = 251 Score = 366 bits (940), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 199/246 (80%), Positives = 221/246 (89%), Gaps = 1/246 (0%) Query: 24 SRWLRLLPVFLLCLPLAAAAQQ-GLPAFTSTPAPGGGQTYNLSIQTMLLLTSLSFIPAAL 82 S LR V L+ LPLAA AQQ GLPA TSTP GGGQ Y LS+QT+LLLT+LSF+PAAL Sbjct: 6 STCLRWSAVALVVLPLAAYAQQAGLPALTSTPTAGGGQNYTLSLQTLLLLTALSFLPAAL 65 Query: 83 LMMTCFTRIVIVLSLLRQALGTQSTPPTQVLVGLSLFLTLFVMGPVFDKIYVDAYQPFAD 142 LMMT FTRI+IVLSLLRQALGTQS PP QV+VGL+LFLTLFVMGPVFDKIY DAY P + Sbjct: 66 LMMTSFTRIIIVLSLLRQALGTQSAPPNQVMVGLALFLTLFVMGPVFDKIYADAYLPLQE 125 Query: 143 NKISMIDAMEKGAAPLKEFMLKQTRQSDLALYVKLSHSPDLQGPEDVPLRLLIPAFITSE 202 NKI+M AME+GAAPLK FM+KQTRQ+DLALYVK+S+SP LQGP+DVPLR+L+PAFITSE Sbjct: 126 NKINMTQAMERGAAPLKAFMMKQTRQADLALYVKMSNSPALQGPDDVPLRILVPAFITSE 185 Query: 203 LKTAFQISFAIFIPFLIIDMVVASILMSMGMMMMSPAIVSLPFKLMLFVLVDGWQLLIGS 262 LKTAFQISFAIFIPFLIIDMVVAS+LMSMGMMM+SP+IVSLPFKLMLFVLVDGWQLLIGS Sbjct: 186 LKTAFQISFAIFIPFLIIDMVVASVLMSMGMMMVSPSIVSLPFKLMLFVLVDGWQLLIGS 245 Query: 263 LAESFY 268 LA+SFY Sbjct: 246 LAQSFY 251 >ref|YP_001353121.1| flagellar biosynthesis protein FliP [Janthinobacterium sp. Marseille] gb|ABR88433.1| Flip component of flagellar biosynthesis pathway [Janthinobacterium sp. Marseille] Length = 252 Score = 360 bits (925), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 190/231 (82%), Positives = 215/231 (93%), Gaps = 1/231 (0%) Query: 39 LAAAAQQ-GLPAFTSTPAPGGGQTYNLSIQTMLLLTSLSFIPAALLMMTCFTRIVIVLSL 97 +AA AQQ GLPAFTS+PAPGGGQTY+LS+QT+LLLT LSF+PA LLMMT FTRI+IVLSL Sbjct: 22 VAAMAQQAGLPAFTSSPAPGGGQTYSLSLQTLLLLTGLSFLPAVLLMMTSFTRIIIVLSL 81 Query: 98 LRQALGTQSTPPTQVLVGLSLFLTLFVMGPVFDKIYVDAYQPFADNKISMIDAMEKGAAP 157 LRQALGTQS+PP QV++GLSLFLTLFVM PV DKIYVDAYQPF+ NKI M +A++K AP Sbjct: 82 LRQALGTQSSPPNQVIIGLSLFLTLFVMSPVLDKIYVDAYQPFSQNKIQMQEALDKAVAP 141 Query: 158 LKEFMLKQTRQSDLALYVKLSHSPDLQGPEDVPLRLLIPAFITSELKTAFQISFAIFIPF 217 LK FM+KQTR+SDLALYVKLS P+LQGPED+PLR+L+PAF+TSELKTAFQISFAIFIPF Sbjct: 142 LKTFMIKQTRESDLALYVKLSKGPELQGPEDIPLRILVPAFVTSELKTAFQISFAIFIPF 201 Query: 218 LIIDMVVASILMSMGMMMMSPAIVSLPFKLMLFVLVDGWQLLIGSLAESFY 268 LIIDMVVAS+LMSMGMMM+SPAIV+LPFKLMLFVLVDGWQLLIGSLA+SFY Sbjct: 202 LIIDMVVASVLMSMGMMMVSPAIVALPFKLMLFVLVDGWQLLIGSLAQSFY 252 >gb|AAV68366.1| FliP [Herminiimonas arsenicoxydans] Length = 271 Score = 357 bits (916), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 189/231 (81%), Positives = 213/231 (92%), Gaps = 1/231 (0%) Query: 39 LAAAAQQ-GLPAFTSTPAPGGGQTYNLSIQTMLLLTSLSFIPAALLMMTCFTRIVIVLSL 97 +AA AQQ GLPA TSTP PGGGQTY+LS+QT+LLLT LSF+PA LLMMT FTRI+IVLSL Sbjct: 41 MAAMAQQAGLPALTSTPTPGGGQTYSLSLQTLLLLTGLSFLPAVLLMMTSFTRIIIVLSL 100 Query: 98 LRQALGTQSTPPTQVLVGLSLFLTLFVMGPVFDKIYVDAYQPFADNKISMIDAMEKGAAP 157 LRQALGTQS+PP QV++GLSLFLTLFVM PV DKIYVDAYQPF+ NKI M +A++K AP Sbjct: 101 LRQALGTQSSPPNQVIIGLSLFLTLFVMSPVLDKIYVDAYQPFSANKIQMGEALDKAVAP 160 Query: 158 LKEFMLKQTRQSDLALYVKLSHSPDLQGPEDVPLRLLIPAFITSELKTAFQISFAIFIPF 217 LK FM+KQTR+SDLALYVK+S P+LQGPED+PLR+L+PAFITSELKTAFQISFAIFIPF Sbjct: 161 LKTFMIKQTRESDLALYVKMSKGPELQGPEDIPLRILVPAFITSELKTAFQISFAIFIPF 220 Query: 218 LIIDMVVASILMSMGMMMMSPAIVSLPFKLMLFVLVDGWQLLIGSLAESFY 268 LIIDMVVAS+LMSMGMMM+SPAIV+LPFKLMLFVLVDGWQLLIGSLA+SFY Sbjct: 221 LIIDMVVASVLMSMGMMMVSPAIVALPFKLMLFVLVDGWQLLIGSLAQSFY 271 >ref|YP_001100162.1| flagellar biosynthesis protein FliP [Herminiimonas arsenicoxydans] emb|CAL62038.1| Flagellar biosynthetic protein FliP Precursor [Herminiimonas arsenicoxydans] Length = 252 Score = 357 bits (915), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 189/231 (81%), Positives = 213/231 (92%), Gaps = 1/231 (0%) Query: 39 LAAAAQQ-GLPAFTSTPAPGGGQTYNLSIQTMLLLTSLSFIPAALLMMTCFTRIVIVLSL 97 +AA AQQ GLPA TSTP PGGGQTY+LS+QT+LLLT LSF+PA LLMMT FTRI+IVLSL Sbjct: 22 MAAMAQQAGLPALTSTPTPGGGQTYSLSLQTLLLLTGLSFLPAVLLMMTSFTRIIIVLSL 81 Query: 98 LRQALGTQSTPPTQVLVGLSLFLTLFVMGPVFDKIYVDAYQPFADNKISMIDAMEKGAAP 157 LRQALGTQS+PP QV++GLSLFLTLFVM PV DKIYVDAYQPF+ NKI M +A++K AP Sbjct: 82 LRQALGTQSSPPNQVIIGLSLFLTLFVMSPVLDKIYVDAYQPFSANKIQMGEALDKAVAP 141 Query: 158 LKEFMLKQTRQSDLALYVKLSHSPDLQGPEDVPLRLLIPAFITSELKTAFQISFAIFIPF 217 LK FM+KQTR+SDLALYVK+S P+LQGPED+PLR+L+PAFITSELKTAFQISFAIFIPF Sbjct: 142 LKTFMIKQTRESDLALYVKMSKGPELQGPEDIPLRILVPAFITSELKTAFQISFAIFIPF 201 Query: 218 LIIDMVVASILMSMGMMMMSPAIVSLPFKLMLFVLVDGWQLLIGSLAESFY 268 LIIDMVVAS+LMSMGMMM+SPAIV+LPFKLMLFVLVDGWQLLIGSLA+SFY Sbjct: 202 LIIDMVVASVLMSMGMMMVSPAIVALPFKLMLFVLVDGWQLLIGSLAQSFY 252