BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0057.p (149 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775459.1| flagellar motor switch/type III secretion pr... 253 9e-66 ref|YP_001353123.1| FliN flagellar motor switch/type III secreto... 217 5e-55 ref|YP_003673971.1| flagellar motor switch protein FliN [Methylo... 206 1e-51 ref|YP_003050539.1| flagellar motor switch protein FliN [Methylo... 203 6e-51 ref|ZP_08272768.1| Flagellar motor switch protein FliN [Oxalobac... 200 6e-50 >ref|YP_003775459.1| flagellar motor switch/type III secretion protein [Herbaspirillum seropedicae SmR1] gb|ADJ63551.1| flagellar motor switch/type III secretion protein [Herbaspirillum seropedicae SmR1] Length = 151 Score = 253 bits (645), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 128/151 (84%), Positives = 140/151 (92%), Gaps = 2/151 (1%) Query: 1 MAEDNV-DQTAAEDDPWGAALAEQTEAEESQKK-HIPEEEGLTTKPAEATIFKDLSASDI 58 MA++NV AAEDDPWGAA+AEQT+AEE+QKK + +E+G++ PA AT+FKDLSA DI Sbjct: 1 MADENVAGAGAAEDDPWGAAMAEQTQAEEAQKKGEMEDEKGISAAPAMATVFKDLSADDI 60 Query: 59 QTNTPNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLI 118 +TNTPNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLI Sbjct: 61 KTNTPNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLI 120 Query: 119 AQGEVVVVNDKFGIRLTDIITPAERIRKLNR 149 AQGEVVVVNDKFGIRLTDIITPAERIRKLNR Sbjct: 121 AQGEVVVVNDKFGIRLTDIITPAERIRKLNR 151 >ref|YP_001353123.1| FliN flagellar motor switch/type III secretory pathway protein [Janthinobacterium sp. Marseille] gb|ABR88612.1| FliN flagellar motor switch/type III secretory pathway protein [Janthinobacterium sp. Marseille] Length = 139 Score = 217 bits (552), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 112/149 (75%), Positives = 123/149 (82%), Gaps = 10/149 (6%) Query: 1 MAEDNVDQTAAEDDPWGAALAEQTEAEESQKKHIPEEEGLTTKPAEATIFKDLSASDIQT 60 MA++N QT EDD WGAA+AEQ + E + + KPA AT+FKD + D++T Sbjct: 1 MADENEPQTTVEDD-WGAAMAEQEQTEAA---------AIDAKPASATVFKDFAGGDLKT 50 Query: 61 NTPNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQ 120 T NDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDG+AGEPMDVLVNGCLIAQ Sbjct: 51 GTHNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQ 110 Query: 121 GEVVVVNDKFGIRLTDIITPAERIRKLNR 149 GEVVVVNDKFGIRLTDIITPAERIRKLNR Sbjct: 111 GEVVVVNDKFGIRLTDIITPAERIRKLNR 139 >ref|YP_003673971.1| flagellar motor switch protein FliN [Methylotenera versatilis 301] gb|ADI29394.1| flagellar motor switch protein FliN [Methylotenera versatilis 301] Length = 157 Score = 206 bits (523), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 108/157 (68%), Positives = 123/157 (78%), Gaps = 8/157 (5%) Query: 1 MAEDNVDQTAAEDDPWGAALAEQTEAEESQ-------KKHIPEEEGLTTKPAEAT-IFKD 52 MA D + TA +D WGAA+AEQ+ AE + ++ + L +K AE T +F + Sbjct: 1 MANDAAEDTAVAEDDWGAAMAEQSTAEATDDWGAAMAEQEATDTSALQSKNAEQTQVFTE 60 Query: 53 LSASDIQTNTPNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVL 112 +A + +T NDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVL Sbjct: 61 FTAKNKLQDTQNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVL 120 Query: 113 VNGCLIAQGEVVVVNDKFGIRLTDIITPAERIRKLNR 149 VNGCLIAQGEVVVVNDKFGIRLTDIITPAERIRK+NR Sbjct: 121 VNGCLIAQGEVVVVNDKFGIRLTDIITPAERIRKINR 157 >ref|YP_003050539.1| flagellar motor switch protein FliN [Methylovorus glucosetrophus SIP3-4] ref|YP_004039209.1| flagellar motor switch protein flin [Methylovorus sp. MP688] gb|ACT50012.1| flagellar motor switch protein FliN [Methylovorus glucosetrophus SIP3-4] gb|ADQ83973.1| flagellar motor switch protein FliN [Methylovorus sp. MP688] Length = 145 Score = 203 bits (517), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 105/137 (76%), Positives = 116/137 (84%), Gaps = 10/137 (7%) Query: 13 DDPWGAALAEQTEAEESQKKHIPEEEGLTTKPAEATIFKDLSASDIQTNTPNDIDFILDI 72 +D WGAA+AEQ +AE+S L KPA+AT+F +L+ + + T NDIDFILDI Sbjct: 19 EDDWGAAMAEQQQAEDSP---------LQAKPAQATVFTELTGKKM-SETQNDIDFILDI 68 Query: 73 PVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVNDKFGI 132 PVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVNDKFGI Sbjct: 69 PVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVNDKFGI 128 Query: 133 RLTDIITPAERIRKLNR 149 RLTDIITPAERIRK+NR Sbjct: 129 RLTDIITPAERIRKINR 145 >ref|ZP_08272768.1| Flagellar motor switch protein FliN [Oxalobacteraceae bacterium IMCC9480] gb|EGF33767.1| Flagellar motor switch protein FliN [Oxalobacteraceae bacterium IMCC9480] Length = 137 Score = 200 bits (509), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 106/146 (72%), Positives = 120/146 (82%), Gaps = 11/146 (7%) Query: 4 DNVDQTAAEDDPWGAALAEQTEAEESQKKHIPEEEGLTTKPAEATIFKDLSASDIQTNTP 63 DN +Q AAEDD WGAA+AEQ +AE++ L + A T+F++ + S + T Sbjct: 3 DNDEQQAAEDD-WGAAIAEQEQAEKA---------ALNAQQAAPTVFQEFAGSS-KLATH 51 Query: 64 NDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEV 123 NDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDG+AGEPMDVLVNGCLIAQGEV Sbjct: 52 NDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEV 111 Query: 124 VVVNDKFGIRLTDIITPAERIRKLNR 149 VVVNDKFGIRLTDII+PAERI+KLNR Sbjct: 112 VVVNDKFGIRLTDIISPAERIKKLNR 137