BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0049.p (568 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775467.1| hypothetical protein Hsero_2059 [Herbaspiril... 823 0.0 ref|ZP_08272776.1| Flagellar M-ring protein fliF [Oxalobacterace... 659 0.0 ref|YP_001353131.1| flagellar MS-ring protein [Janthinobacterium... 636 e-180 emb|CAL62027.2| Flagellar M-ring protein [Herminiimonas arsenico... 627 e-177 ref|YP_315358.1| flagellar MS-ring protein [Thiobacillus denitri... 626 e-177 >ref|YP_003775467.1| hypothetical protein Hsero_2059 [Herbaspirillum seropedicae SmR1] gb|ADJ63559.1| hypothetical protein Hsero_2059 [Herbaspirillum seropedicae SmR1] Length = 569 Score = 823 bits (2126), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/566 (76%), Positives = 489/566 (86%), Gaps = 33/566 (5%) Query: 35 EPPRNGVVRYAQSPQGRRVVLMVAAAAVIALMIGIWMWSQKTEYRVLFSNFSDRDGGAIV 94 +P +NG++ YA+SPQG+R++L++AAAA +A+M GIW+WSQK EYRVLFSNF+DRDGGAIV Sbjct: 5 QPAQNGMMGYARSPQGKRILLIIAAAATLAVMAGIWLWSQKVEYRVLFSNFNDRDGGAIV 64 Query: 95 ARX------YKYSEGGSAILVPETMVHDARLKLASQGLPKGGNVGFELMENQKLGVSQFL 148 A YKYS+GG+AILVPE MVHDARLKLA+QGLPKGGNVGFELMENQKLG+SQFL Sbjct: 65 ASLQQMNVPYKYSDGGTAILVPENMVHDARLKLAAQGLPKGGNVGFELMENQKLGISQFL 124 Query: 149 EQVNFQRALEGELARSIQSLSAVQAARIHLALPKASVFVRDQQKPTASVILSLYPGRGLD 208 EQVNFQRALEGELARS+ SL++VQ AR+HLALPKASVFVRDQQKPTASV+LSLYPGR LD Sbjct: 125 EQVNFQRALEGELARSVGSLASVQTARVHLALPKASVFVRDQQKPTASVVLSLYPGRYLD 184 Query: 209 PQQVSAIVHLVASSVPELSPKSVTIVDQNGNLLSDTTKQP-ANGLDPTQLKYVQDLQQDI 267 PQQVSAIVHLVASSVPELSPK+VTIVDQNGNLLSDTTKQ N LDPTQLKYVQD+QQDI Sbjct: 185 PQQVSAIVHLVASSVPELSPKAVTIVDQNGNLLSDTTKQAQPNTLDPTQLKYVQDMQQDI 244 Query: 268 IKRVESIIAPIVGTGNVRAEATADVDFSRSEQAAETYKPNQTADTAAVRSKQSSESQNGN 327 +KRVESIIAPIVG GNVRAEATADVDFSRSEQA+E YKPNQT D+AAVRSKQSSE+ + + Sbjct: 245 VKRVESIIAPIVGNGNVRAEATADVDFSRSEQASEAYKPNQTKDSAAVRSKQSSEANSAS 304 Query: 328 SSTSGIPGALTNQPPAXGT-----------------AAAP------ATSSGTSHKDATIN 364 + TSG+PGAL+NQPPA T AA P T++G S KD TIN Sbjct: 305 NGTSGVPGALSNQPPAPATAPIVNPAVANGAANQTGAATPNGALPTPTATGNSRKDETIN 364 Query: 365 YEVDKTVRYVQQPMGGVKRLTVAVVVNYKRTTDQTGKVVMKPLTEAERNQISDLVKEAMG 424 YEVDKTVRY QQPMGGV+RLTVAVVVNYKRT D TGK+VM+PLTEAERNQI+DLVKEAMG Sbjct: 365 YEVDKTVRYTQQPMGGVRRLTVAVVVNYKRTMDNTGKIVMRPLTEAERNQITDLVKEAMG 424 Query: 425 FNKDRGDSLNVVNTQFSSEMEPELPLWKQPDMIQLAKEIGKYVLLAAVLLYLYFGVLRPI 484 +NKDRGDSLNVVNTQFS++MEPE+PLWKQP MI LAKEIGKYVL+AAVLL+LYF VLRPI Sbjct: 425 YNKDRGDSLNVVNTQFSTDMEPEVPLWKQPGMIDLAKEIGKYVLVAAVLLFLYFRVLRPI 484 Query: 485 IWKLSGREERE--AKERAEAEAKAAAEAAAAMYDPDNPDAIVELSPEAAEADARSEYKKN 542 +WKLSGREERE AKE+AEAEA AAA A AA +DPD+PDAIV LS E +E D R++YK N Sbjct: 485 VWKLSGREERERLAKEKAEAEAAAAAAAVAAGFDPDDPDAIVNLSGE-SEVDERAQYKAN 543 Query: 543 LESVKQLAKSDPKLVASIIKAWVNNE 568 LE+ KQ AK+DPKLVASIIK+WVNNE Sbjct: 544 LETAKQWAKNDPKLVASIIKSWVNNE 569 >ref|ZP_08272776.1| Flagellar M-ring protein fliF [Oxalobacteraceae bacterium IMCC9480] gb|EGF33775.1| Flagellar M-ring protein fliF [Oxalobacteraceae bacterium IMCC9480] Length = 564 Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/557 (60%), Positives = 422/557 (75%), Gaps = 36/557 (6%) Query: 39 NGVVRYAQSPQGRRVVLMVAAAAVIALMIGIWMWSQKTEYRVLFSNFSDRDGGAIVARX- 97 N ++ +A+S GR ++LM+ AA VIA+M G+WMWSQ+ +YRVLFSNF+DRDGGAIV + Sbjct: 12 NPLISFAESQGGRNLLLMLGAAIVIAVMAGVWMWSQQPDYRVLFSNFTDRDGGAIVTQLQ 71 Query: 98 -----YKYSEGGSAILVPETMVHDARLKLASQGLPKGGNVGFELMENQKLGVSQFLEQVN 152 YK++EGG AILVP VHDARL++A+ GLPKGGNVGFELMENQKLGVSQFLEQVN Sbjct: 72 QMNVPYKFAEGGGAILVPADQVHDARLRIAAMGLPKGGNVGFELMENQKLGVSQFLEQVN 131 Query: 153 FQRALEGELARSIQSLSAVQAARIHLALPKASVFVRDQQKPTASVILSLYPGRGLDPQQV 212 FQRALEGELARS+QS+ AV++AR+HLA+PKASVFVRDQQKPTASV+L+L PGR L QQV Sbjct: 132 FQRALEGELARSVQSIGAVESARVHLAMPKASVFVRDQQKPTASVVLNLNPGRSLSEQQV 191 Query: 213 SAIVHLVASSVPELSPKSVTIVDQNGNLLSDTTK-QPANGLDPTQLKYVQDLQQDIIKRV 271 SAIVHLVASSVP+L P +++++DQNGNLLSDT+K A GLDPTQLKY+Q++QQ+I++R+ Sbjct: 192 SAIVHLVASSVPDLPPGNISVIDQNGNLLSDTSKAAKATGLDPTQLKYIQEVQQNIVRRI 251 Query: 272 ESIIAPIVGTGNVRAEATADVDFSRSEQAAETYKPNQTADTAAVRSKQSSESQNGNSSTS 331 ESII PIVG NVRAEATAD+DFS SEQAAETYKPN + + +RS+QSSESQ N Sbjct: 252 ESIITPIVGPNNVRAEATADIDFSTSEQAAETYKPNSPPNQSTMRSQQSSESQGSNPGAG 311 Query: 332 GIPGALTNQPPAXG-------------------TAAAPATSSGTSHKDATINYEVDKTVR 372 G+PGAL+NQP A + A AT++ S KD T+NYEVDKTVR Sbjct: 312 GVPGALSNQPAANATAPINPPAPAPAPAAGQGVSTGATATAAVPSQKDMTVNYEVDKTVR 371 Query: 373 YVQQPMGGVKRLTVAVVVNYKRTTDQTGKVVMKPLTEAERNQISDLVKEAMGFNKDRGDS 432 YVQQPMGGVKR++VAVVVNYK+ TD+ GKV PLTEAER QI+DLVKEAMGFNKDRGD+ Sbjct: 372 YVQQPMGGVKRISVAVVVNYKQVTDKAGKVTATPLTEAERVQITDLVKEAMGFNKDRGDT 431 Query: 433 LNVVNTQFSS---EMEPELPLWKQPDMIQLAKEIGKYVLLAAVLLYLYFGVLRPIIWKLS 489 LNVVN+ F+ E+ PE+P+WK+P+MIQLAKE+GKY+L LLYL+FGVLRP++ K + Sbjct: 432 LNVVNSAFAGVPKEVFPEVPIWKRPEMIQLAKELGKYLLGGIALLYLFFGVLRPMLKKFN 491 Query: 490 GREEREAKERAEAEAKAAAEAAAAMYDPDNPDAIVELSPEAAEADARSEYKKNLESVKQL 549 + + + + +A AM+ E + E A Y++NL+ KQL Sbjct: 492 TPQPKIRAVVDDEDDEAETPEMRAMH-------AAERTTEVPAESASMAYQQNLDLAKQL 544 Query: 550 AKSDPKLVASIIKAWVN 566 AK DPK+VA+I+K WV+ Sbjct: 545 AKDDPKVVANIVKNWVS 561 >ref|YP_001353131.1| flagellar MS-ring protein [Janthinobacterium sp. Marseille] gb|ABR88807.1| flagellar basal-body M-ring protein [Janthinobacterium sp. Marseille] Length = 585 Score = 636 bits (1640), Expect = e-180, Method: Compositional matrix adjust. Identities = 334/576 (57%), Positives = 415/576 (72%), Gaps = 61/576 (10%) Query: 38 RNGVVRYAQSPQGRRVVLMVAAAAVIALMIGIWMWSQKTEYRVLFSNFSDRDGGAIVARX 97 +N + A+SP GR+V+LM+ +AAVIA+MI + +WSQK EY+VLFSNFSDRDGGAI++ Sbjct: 26 QNSFMDMAKSPNGRKVMLMLGSAAVIAIMIALVLWSQKPEYKVLFSNFSDRDGGAIMSSL 85 Query: 98 ------YKYSEGGSAILVPETMVHDARLKLASQGLPKGGNVGFELMENQKLGVSQFLEQV 151 YK++EGG AILVP VH+ RLKLA++GLPKGG VGFELMENQKLGVSQFLEQV Sbjct: 86 QASNVPYKFAEGGGAILVPADKVHEIRLKLAAEGLPKGGGVGFELMENQKLGVSQFLEQV 145 Query: 152 NFQRALEGELARSIQSLSAVQAARIHLALPKASVFVRDQQKPTASVILSLYPGRGLDPQQ 211 NFQRALEGELARSIQS+ AVQAAR+HLA+PKASVFVRDQQKPTASV+L+L GR LD QQ Sbjct: 146 NFQRALEGELARSIQSVGAVQAARVHLAMPKASVFVRDQQKPTASVLLNLRQGRALDQQQ 205 Query: 212 VSAIVHLVASSVPELSPKSVTIVDQNGNLLSDTTKQPA--NGLDPTQLKYVQDLQQDIIK 269 VSAIVHLVASSVPELSPK+VTIVDQ+GNLLS+T K PA N LDP+QLKYVQ+LQQ I K Sbjct: 206 VSAIVHLVASSVPELSPKNVTIVDQSGNLLSETNK-PAGSNTLDPSQLKYVQELQQSITK 264 Query: 270 RVESIIAPIVGTGNVRAEATADVDFSRSEQAAETYKPNQTADTAAVRSKQSSESQNGNSS 329 R+ESII PIVG N+RAEATADVDFS SEQAAE YKPNQ ++A VRS Q+SES+ + Sbjct: 265 RIESIITPIVGASNIRAEATADVDFSTSEQAAEIYKPNQVPNSATVRSLQTSESRGNGTG 324 Query: 330 TSGIPGALTNQPPAXGTA---AAPATSSGT------------------------------ 356 SG+PGALTNQP TA A P + GT Sbjct: 325 ASGVPGALTNQPAPNATAPLTAPPLAADGTPSTATNPPAPGTPAAAAAAAAAATAAANAT 384 Query: 357 -SHKDATINYEVDKTVRYVQQPMGGVKRLTVAVVVNYKRTTDQTGKVVMKPLTEAERNQI 415 + KD T N+EVDKTVRYVQQPMGG+KRL+VAVVVNYKR + GKV + PL+E E+NQI Sbjct: 385 PTQKDTTTNFEVDKTVRYVQQPMGGLKRLSVAVVVNYKRVVAKDGKVTIAPLSETEKNQI 444 Query: 416 SDLVKEAMGFNKDRGDSLNVVNTQFSSEMEPEL---PLWKQPDMIQLAKEIGKYVLLAAV 472 +DLVKEAMG+NKDRGD+LNVVN+ F+ + E+ PLW++P++I++A + KY+ + V Sbjct: 445 TDLVKEAMGYNKDRGDTLNVVNSPFAGVEKDEIVQPPLWERPEIIEMAIQAAKYLAIGIV 504 Query: 473 LLYLYFGVLRPIIWKLSGREEREAKERAEAEAKAAAEAAAAMYDPDNPDAIVELSPEAAE 532 L LY +L+P++ KL+ E +AEA M+ L + Sbjct: 505 LFLLYRKLLKPMLNKLNPPPPEPLALEDE-----SAEALEKMH----------LEEDGKP 549 Query: 533 ADARSEYKKNLESVKQLAKSDPKLVASIIKAWVNNE 568 ++ Y++NLE+ K+LA+ DPK+VA+I+K+WV N+ Sbjct: 550 MGIQNTYQQNLEAAKELARKDPKVVANIVKSWVGND 585 >emb|CAL62027.2| Flagellar M-ring protein [Herminiimonas arsenicoxydans] Length = 562 Score = 627 bits (1617), Expect = e-177, Method: Compositional matrix adjust. Identities = 339/566 (59%), Positives = 406/566 (71%), Gaps = 56/566 (9%) Query: 41 VVRYAQSPQGRRVVLMVAAAAVIALMIGIWMWSQKTEYRVLFSNFSDRDGGAIVARX--- 97 ++ A+SP GR+ +LMV AAVIA+MIG+ +W QK EYRVLFSNFSDRDGGAI+ Sbjct: 15 ILNMAKSPNGRKFLLMVGVAAVIAVMIGLVLWGQKPEYRVLFSNFSDRDGGAIMTSLQAA 74 Query: 98 ---YKYSEGGSAILVPETMVHDARLKLASQGLPKGGNVGFELMENQKLGVSQFLEQVNFQ 154 YK++EGG AILVP VH+ RLKLA++GLPKGG+VGFELMENQKLGVSQFLEQVNFQ Sbjct: 75 NVPYKFAEGGGAILVPADKVHEIRLKLAAEGLPKGGSVGFELMENQKLGVSQFLEQVNFQ 134 Query: 155 RALEGELARSIQSLSAVQAARIHLALPKASVFVRDQQKPTASVILSLYPGRGLDPQQVSA 214 RALEGELARSIQS+ AVQAAR+HLALPKASVFVRDQQKPTASV+L+L+ GR LD QQVSA Sbjct: 135 RALEGELARSIQSVGAVQAARVHLALPKASVFVRDQQKPTASVLLNLHAGRFLDQQQVSA 194 Query: 215 IVHLVASSVPELSPKSVTIVDQNGNLLSDTTKQPA--NGLDPTQLKYVQDLQQDIIKRVE 272 IVHLVASSVPELSPK+VTIVDQ GNLLS+ K PA N LDP+QLKYVQ+LQQ+I KR+E Sbjct: 195 IVHLVASSVPELSPKNVTIVDQAGNLLSENNK-PAGTNTLDPSQLKYVQELQQNIAKRIE 253 Query: 273 SIIAPIVGTGNVRAEATADVDFSRSEQAAETYKPNQTADTAAVRSKQSSESQNGNSSTSG 332 SII PIVG NVRAEATADVDFS SEQAAE YKPNQ +A VRS+Q+SES NG+++ +G Sbjct: 254 SIITPIVGLNNVRAEATADVDFSTSEQAAEIYKPNQVPSSATVRSQQTSESTNGSNNATG 313 Query: 333 IPGALTNQPPAXGTAAAPATSSGTS--------------------------HKDATINYE 366 +PGALTNQP TA T T+ +D T NYE Sbjct: 314 VPGALTNQPAPAATAPLNTTPQTTAAPGTPGAPGTPGAPAATATAPQATPIQRDTTTNYE 373 Query: 367 VDKTVRYVQQPMGGVKRLTVAVVVNYKRTTDQTGKVVMKPLTEAERNQISDLVKEAMGFN 426 VDKT+RYVQQPMGG+KRL+VAVVVNYKR + GKV PLTE E+ QI+DLV+EAMG+N Sbjct: 374 VDKTIRYVQQPMGGLKRLSVAVVVNYKRVVGKDGKVSFLPLTEIEKTQITDLVREAMGYN 433 Query: 427 KDRGDSLNVVNTQFSS---EMEPELPLWKQPDMIQLAKEIGKYVLLAAVLLYLYFGVLRP 483 KDRGD+LNVVN+ F+ E P+LPLW++P+ I + + KY+LL VLL LYF VL+P Sbjct: 434 KDRGDTLNVVNSPFAGSNKEEAPKLPLWERPEAIDMGMQGAKYLLLGIVLLILYFKVLKP 493 Query: 484 IIWKLSGREEREAKERAEAEAKAAAEAAAAMYDPDNPDAIVELSPEAAEADAR-SEYKKN 542 ++ KL+ E + A EL E Y++N Sbjct: 494 LLNKLNPPPLALTDESGQPVGMAQ-----------------ELEEEVGPMGIHMHSYQQN 536 Query: 543 LESVKQLAKSDPKLVASIIKAWVNNE 568 LE+ K+LA+ DPK+VA+I+KAWV NE Sbjct: 537 LEAAKELARQDPKVVANIVKAWVGNE 562 >ref|YP_315358.1| flagellar MS-ring protein [Thiobacillus denitrificans ATCC 25259] gb|AAZ97553.1| flagellar M-ring protein FliF [Thiobacillus denitrificans ATCC 25259] Length = 548 Score = 626 bits (1614), Expect = e-177, Method: Compositional matrix adjust. Identities = 327/556 (58%), Positives = 419/556 (75%), Gaps = 51/556 (9%) Query: 41 VVRYAQSPQGRRVVLMVAAAAVIALMIGIWMWSQKTEYRVLFSNFSDRDGGAIVARX--- 97 V+ + ++ GR+++LM+ AA +A+M +WMW Q+ EYRVLFSNFSDRDGGAIVA Sbjct: 13 VMEFTRTAGGRKILLMLGVAASVAVMAAVWMWGQQPEYRVLFSNFSDRDGGAIVAELEKM 72 Query: 98 ---YKYSEGGSAILVPETMVHDARLKLASQGLPKGGNVGFELMENQKLGVSQFLEQVNFQ 154 YKY+EGG A+LVP VHDARLKLASQGLPKGGNVGFELMENQ+LG SQF+EQVNFQ Sbjct: 73 NVPYKYAEGGGAVLVPADRVHDARLKLASQGLPKGGNVGFELMENQRLGASQFVEQVNFQ 132 Query: 155 RALEGELARSIQSLSAVQAARIHLALPKASVFVRDQQKPTASVILSLYPGRGLDPQQVSA 214 RA+EGELARSI+S+SAVQAAR+HLALPK S+FV +Q++PTASV+L+L+PGR LDPQQVSA Sbjct: 133 RAMEGELARSIESVSAVQAARVHLALPKDSIFVSEQKQPTASVLLNLHPGRALDPQQVSA 192 Query: 215 IVHLVASSVPELSPKSVTIVDQNGNLLSDTTKQP-ANGLDPTQLKYVQDLQQDIIKRVES 273 IVHLVASSVPEL+ K+VT+VDQNGNLLSD K P NG+DP+Q+KYVQ+LQQD+++R+ES Sbjct: 193 IVHLVASSVPELATKNVTVVDQNGNLLSDAGKAPRVNGMDPSQIKYVQELQQDVVQRIES 252 Query: 274 IIAPIVGTGNVRAEATADVDFSRSEQAAETYKPNQTADTAAVRSKQSSESQNGNSSTSGI 333 II PIVG GNVRAEATADVDFSRSEQA E+YKPNQT D A+RS+Q+SES NG+++ +G+ Sbjct: 253 IITPIVGPGNVRAEATADVDFSRSEQAVESYKPNQTPDAMAIRSQQTSESLNGSANPAGV 312 Query: 334 PGALTNQPPAXGTAAAPATSSG---------------TSHKDATINYEVDKTVRYVQQPM 378 PGAL NQPPA T AP T G ++ KDAT+NYEVDKT++YVQQ Sbjct: 313 PGALINQPPAPAT--APITVPGQATPAPAAAAAQPATSTRKDATVNYEVDKTIQYVQQAG 370 Query: 379 GGVKRLTVAVVVNYKRTTDQTGKVVMKPLTEAERNQISDLVKEAMGFNKDRGDSLNVVNT 438 GG+KRL+V VVVNYK+T D+ GKV MKPL+EAE+ QI++LVKEAMG+N+ RGD++NVVN+ Sbjct: 371 GGLKRLSVGVVVNYKKTVDKAGKVAMKPLSEAEKTQITNLVKEAMGYNQARGDTVNVVNS 430 Query: 439 QFSSEME---PELPLWKQP---DMIQLAKEIGKYVLLAAVLLYLYFGVLRPIIWKLSGRE 492 F+S E P+ P WKQP + +A+ +GKY+L+ LL LY V +P++ K+S Sbjct: 431 PFASAQEEDLPQPPFWKQPEYAEYFDIARNVGKYLLMGIALLLLYLKVAKPLLKKMS--- 487 Query: 493 EREAKERAEAEAKAAAEAAAAMYDPDNPDAIVEL-SPEAAEADARSEYKKNLESVKQLAK 551 E +A AA P++P + +L + E A + Y++NL ++LA Sbjct: 488 --------EQQALAA---------PNHPLHLEQLATDERAALPGQRNYQENLSRAQRLAN 530 Query: 552 SDPKLVASIIKAWVNN 567 DP++VA+I+K WV N Sbjct: 531 EDPRVVANIVKTWVAN 546