BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0047.p         (113 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775469.1| flagellar hook-basal body protein [Herbaspir...   148   2e-34
ref|YP_001353132.1| flagellar hook-basal body protein FliE [Jant...   132   2e-29
ref|YP_001100149.1| flagellar hook-basal body protein FliE [Herm...   127   5e-28
ref|ZP_08272777.1| Flagellar hook-basal body complex protein Fli...   120   6e-26
ref|YP_003048362.1| flagellar hook-basal body protein FliE [Meth...   118   3e-25

>ref|YP_003775469.1| flagellar hook-basal body protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63561.1| flagellar hook-basal body protein [Herbaspirillum seropedicae SmR1]
          Length = 118

 Score =  148 bits (374), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 81/113 (71%), Positives = 97/113 (85%)

Query: 1   MIDTSRIEAMVSQLKAAAARAQGNVAPVESITGGEKPAQRVDFASVLKNSLDEVSASQEK 60
           +IDTS+IEAMV+QLKAAAARAQG   P +     EK A RVDF+ VLK ++D+V+ SQ+K
Sbjct: 6   VIDTSKIEAMVAQLKAAAARAQGVSEPAQIGLKVEKAAPRVDFSEVLKGAIDQVNDSQQK 65

Query: 61  SKKMSEAFSMGDDNINLSDVMIAMQKSSISFQTSLQVRNKLVSAYRDIMTMQV 113
           + KMS+AF+MGDDN+NLSDVMIA QK+SISFQTS+QVRNKLVSAYRDIMTMQV
Sbjct: 66  ASKMSQAFAMGDDNVNLSDVMIASQKASISFQTSIQVRNKLVSAYRDIMTMQV 118


>ref|YP_001353132.1| flagellar hook-basal body protein FliE [Janthinobacterium sp.
           Marseille]
 gb|ABR88839.1| FliE flagellar hook-basal body protein [Janthinobacterium sp.
           Marseille]
          Length = 122

 Score =  132 bits (331), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 66/113 (58%), Positives = 90/113 (79%), Gaps = 1/113 (0%)

Query: 2   IDTSRIEAMVSQLKAAAARAQG-NVAPVESITGGEKPAQRVDFASVLKNSLDEVSASQEK 60
           ID+S I+AMV+QL+AAAAR+Q  +V P+  +   EK A R DF+  LK SLD V+++Q  
Sbjct: 10  IDSSAIDAMVAQLRAAAARSQAPSVNPLGGMAQPEKTATRADFSQALKASLDNVASAQNS 69

Query: 61  SKKMSEAFSMGDDNINLSDVMIAMQKSSISFQTSLQVRNKLVSAYRDIMTMQV 113
           + +M E FSMGDD++NLSDVM++MQK+SISFQ ++QVRNKLVSAY+++M MQV
Sbjct: 70  ANQMGEKFSMGDDSVNLSDVMVSMQKASISFQATVQVRNKLVSAYQEMMNMQV 122


>ref|YP_001100149.1| flagellar hook-basal body protein FliE [Herminiimonas
           arsenicoxydans]
 emb|CAL62025.1| Flagellar hook-basal body complex protein FliE [Herminiimonas
           arsenicoxydans]
          Length = 119

 Score =  127 bits (320), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 64/116 (55%), Positives = 91/116 (78%), Gaps = 7/116 (6%)

Query: 2   IDTSRIEAMVSQLKAAAARAQGNVAPVESITGG----EKPAQRVDFASVLKNSLDEVSAS 57
           ID++ I+AMV+QLKAAAAR+Q  + P   + GG    EK A +VDF+  LK SLD V+++
Sbjct: 7   IDSTAIDAMVAQLKAAAARSQPAINP---LAGGASPVEKSATKVDFSQALKASLDNVASA 63

Query: 58  QEKSKKMSEAFSMGDDNINLSDVMIAMQKSSISFQTSLQVRNKLVSAYRDIMTMQV 113
           Q  + K+ + F++GDD++NLSDVMI+MQK+SISFQ ++Q+RNK+VSAY++IM MQV
Sbjct: 64  QNHADKLGQKFTLGDDSVNLSDVMISMQKASISFQATVQMRNKVVSAYQEIMNMQV 119


>ref|ZP_08272777.1| Flagellar hook-basal body complex protein FliE [Oxalobacteraceae
           bacterium IMCC9480]
 gb|EGF33776.1| Flagellar hook-basal body complex protein FliE [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 114

 Score =  120 bits (302), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 62/113 (54%), Positives = 82/113 (72%), Gaps = 3/113 (2%)

Query: 1   MIDTSRIEAMVSQLKAAAARAQGNVAPVESITGGEKPAQRVDFASVLKNSLDEVSASQEK 60
           MID+ RIEAM+SQLKAAA R QG V PV  +        +  FA  LK SLD V+ASQ+ 
Sbjct: 5   MIDSGRIEAMISQLKAAATRPQGGV-PV--VAADPTAVAKTGFADALKASLDGVNASQKT 61

Query: 61  SKKMSEAFSMGDDNINLSDVMIAMQKSSISFQTSLQVRNKLVSAYRDIMTMQV 113
           ++ +   F++GDD ++LSDVMI+ QK++I FQ ++QVRNKLVSAY+DIM MQ+
Sbjct: 62  AEGLGSRFALGDDKVSLSDVMISSQKANIGFQATVQVRNKLVSAYQDIMNMQI 114


>ref|YP_003048362.1| flagellar hook-basal body protein FliE [Methylotenera mobilis JLW8]
 gb|ACT47835.1| flagellar hook-basal body complex subunit FliE [Methylotenera
           mobilis JLW8]
          Length = 118

 Score =  118 bits (295), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 59/113 (52%), Positives = 88/113 (77%), Gaps = 1/113 (0%)

Query: 2   IDTSRIEAMVSQLKAAAARAQG-NVAPVESITGGEKPAQRVDFASVLKNSLDEVSASQEK 60
           ID+S IE+M++Q++AAA R Q  ++A + S  G  K   +VDFA  LK SLD+V+  Q+ 
Sbjct: 6   IDSSTIESMLAQMRAAAQRPQAESIANLASPIGANKSTGKVDFADALKASLDQVNQVQKS 65

Query: 61  SKKMSEAFSMGDDNINLSDVMIAMQKSSISFQTSLQVRNKLVSAYRDIMTMQV 113
           ++ + + F++GDD+++LSDVMIA QK++ISFQ ++QVRNKLVSAY+DIM+MQ+
Sbjct: 66  AETLGKNFALGDDSVSLSDVMIAGQKANISFQATIQVRNKLVSAYQDIMSMQI 118