BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0025.p (305 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775494.1| methionyl-tRNA formyltransferase [Herbaspiri... 552 e-155 ref|ZP_02883468.1| formyl transferase domain protein [Burkholder... 413 e-113 ref|YP_004228330.1| formyl transferase domain-containing protein... 411 e-113 ref|ZP_06840571.1| formyl transferase domain protein [Burkholder... 410 e-112 ref|YP_004753114.1| polymyxin resistance protein ArnA_FT, UDP-4-... 409 e-112 >ref|YP_003775494.1| methionyl-tRNA formyltransferase [Herbaspirillum seropedicae SmR1] gb|ADJ63586.1| methionyl-tRNA formyltransferase protein [Herbaspirillum seropedicae SmR1] Length = 305 Score = 552 bits (1422), Expect = e-155, Method: Compositional matrix adjust. Identities = 262/304 (86%), Positives = 278/304 (91%) Query: 1 MNAVVFAYHDVGVRCLKVLLARGVRVALVVTHEDSATENIWFNSVAGVCREYGIPYITPE 60 MNAVVFAYHDVGVRCLKVLLARGV+V+LVVTHEDSATENIWF SVAGVCRE+GI ITP Sbjct: 1 MNAVVFAYHDVGVRCLKVLLARGVQVSLVVTHEDSATENIWFGSVAGVCREHGIACITPA 60 Query: 61 DPKSPQLLTQVQAAQPDFIFSFYYRHMLPVNLLALAKHGAYNMHGSLLPKYRGRVPINWA 120 DPKSPQLL QVQAAQPDFIFSFYYRHMLPV +LA AK GAYNMHGSLLPKYRGRVPINWA Sbjct: 61 DPKSPQLLAQVQAAQPDFIFSFYYRHMLPVEVLAAAKRGAYNMHGSLLPKYRGRVPINWA 120 Query: 121 VLHGETETGATLHEMAAKPDAGAIVAQTSVPILPDDTAFEVFGKVVVAAEQTLWRVLPLM 180 VLHGETETGATLHEM KPDAGAIVAQTSVPILPDDTA EVFGKVVVAAE TLW VLP M Sbjct: 121 VLHGETETGATLHEMTVKPDAGAIVAQTSVPILPDDTAHEVFGKVVVAAELTLWNVLPAM 180 Query: 181 LAGRTPKLPNDLSKGSYFGGRKPEDGRIDWKKPAQHVHNLVRTVAPPYPGAFEEIAGDKI 240 L+GRTP +PNDLSKGSY+GGRKPEDGRIDW++ A+ VHNLVR VAPPYPGAFEEIA DKI Sbjct: 181 LSGRTPSMPNDLSKGSYYGGRKPEDGRIDWRRTAREVHNLVRAVAPPYPGAFEEIADDKI 240 Query: 241 TLVKTRLVSASARPTLERSHGAQDKFFEGGRLYARCGDGNYLQILGIQINDQDVSLNNYL 300 T+ +TRLV SA P L+R+HG QDKFFEGG+LYARCGDGN+LQILGIQINDQD SLNNYL Sbjct: 241 TVTRTRLVPPSAHPALQRAHGMQDKFFEGGKLYARCGDGNFLQILGIQINDQDASLNNYL 300 Query: 301 KYMA 304 KYMA Sbjct: 301 KYMA 304 >ref|ZP_02883468.1| formyl transferase domain protein [Burkholderia graminis C4D1M] gb|EDT10900.1| formyl transferase domain protein [Burkholderia graminis C4D1M] Length = 311 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 203/283 (71%), Positives = 226/283 (79%), Gaps = 6/283 (2%) Query: 3 AVVFAYHDVGVRCLKVLLARGVRVALVVTHEDSATENIWFNSVAGVCREYGIPYITPEDP 62 AVVFAYH+VGVRCL+VLLARGV VALVVTHEDS TENIWF SVA V E+GIP +TP DP Sbjct: 5 AVVFAYHNVGVRCLQVLLARGVDVALVVTHEDSPTENIWFGSVASVAAEHGIPVVTPADP 64 Query: 63 KSPQLLTQVQAAQPDFIFSFYYRHMLPVNLLALAKHGAYNMHGSLLPKYRGRVPINWAVL 122 KSP+L V AA+PDFIFSFYYRHMLPV++LALA GAYNMHGSLLPKYRGRVP NWAVL Sbjct: 65 KSPELRAAVSAARPDFIFSFYYRHMLPVDVLALAARGAYNMHGSLLPKYRGRVPTNWAVL 124 Query: 123 HGETETGATLHEMAAKPDAGAIVAQTSVPILPDDTAFEVFGKVVVAAEQTLWRVLPLMLA 182 HGETETGATLHEMAAKPDAGAIVAQT VPILPDDTA +VF KV VAAEQTLWRVLP +LA Sbjct: 125 HGETETGATLHEMAAKPDAGAIVAQTPVPILPDDTAAQVFDKVTVAAEQTLWRVLPALLA 184 Query: 183 GRTPKLPNDLSKGSYFGGRKPEDGRIDWKKPAQHVHNLVRTVAPPYPGAFEEIAGDKITL 242 G P LPNDLS GSY+GGRKPEDGRIDW +PAQ V+NL+R VAPPYPGAF ++ G + + Sbjct: 185 GEAPHLPNDLSHGSYYGGRKPEDGRIDWSQPAQQVYNLIRAVAPPYPGAFTDVGGRRFVV 244 Query: 243 VKTRLVSASA-RPTLERSHGAQDKFFEGGRLYARCGDGNYLQI 284 + RL + A RP L D ++A CGDG + I Sbjct: 245 ARARLATPGALRPDLPPGLHVSDN-----AVFAICGDGRAIAI 282 >ref|YP_004228330.1| formyl transferase domain-containing protein [Burkholderia sp. CCGE1001] gb|ADX55270.1| formyl transferase domain protein [Burkholderia sp. CCGE1001] Length = 311 Score = 411 bits (1056), Expect = e-113, Method: Compositional matrix adjust. Identities = 202/282 (71%), Positives = 223/282 (79%), Gaps = 4/282 (1%) Query: 3 AVVFAYHDVGVRCLKVLLARGVRVALVVTHEDSATENIWFNSVAGVCREYGIPYITPEDP 62 AVVFAYH+VGVRCL+VLLARGV VALVVTHEDS TENIWF SVA V E+GIP +TP DP Sbjct: 5 AVVFAYHNVGVRCLQVLLARGVDVALVVTHEDSPTENIWFGSVASVAAEHGIPVVTPADP 64 Query: 63 KSPQLLTQVQAAQPDFIFSFYYRHMLPVNLLALAKHGAYNMHGSLLPKYRGRVPINWAVL 122 SP+L V AA+PDFIFSFYYRHMLPV+LLALA GAYNMHGSLLPKYRGRVP NWAVL Sbjct: 65 TSPELRAAVSAARPDFIFSFYYRHMLPVDLLALAARGAYNMHGSLLPKYRGRVPTNWAVL 124 Query: 123 HGETETGATLHEMAAKPDAGAIVAQTSVPILPDDTAFEVFGKVVVAAEQTLWRVLPLMLA 182 HGETETGATLHEMAAKPDAGAI+AQT VPILPDDTA +VF KV VAAEQTLWRVLP +LA Sbjct: 125 HGETETGATLHEMAAKPDAGAIIAQTPVPILPDDTAAQVFDKVTVAAEQTLWRVLPALLA 184 Query: 183 GRTPKLPNDLSKGSYFGGRKPEDGRIDWKKPAQHVHNLVRTVAPPYPGAFEEIAGDKITL 242 G P LPNDLS GSY+GGRKPEDGRIDW +PAQ V+NL+R VAPPYPGAF +I G + + Sbjct: 185 GEAPHLPNDLSHGSYYGGRKPEDGRIDWTQPAQQVYNLIRAVAPPYPGAFTDIGGRRFVV 244 Query: 243 VKTRLVSASARPTLERSHGAQDKFFEGGRLYARCGDGNYLQI 284 + RL A P RS ++A CGDG + I Sbjct: 245 ARARL----ATPGALRSDLPPGLHVSDNAVFAICGDGRAIAI 282 >ref|ZP_06840571.1| formyl transferase domain protein [Burkholderia sp. Ch1-1] gb|EFG71767.1| formyl transferase domain protein [Burkholderia sp. Ch1-1] Length = 311 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 201/282 (71%), Positives = 223/282 (79%), Gaps = 4/282 (1%) Query: 3 AVVFAYHDVGVRCLKVLLARGVRVALVVTHEDSATENIWFNSVAGVCREYGIPYITPEDP 62 AVVFAYH+VGVRCL+VLLARGV VALVVTHED+ TENIWF SVA V E+GIP +TP DP Sbjct: 5 AVVFAYHNVGVRCLQVLLARGVDVALVVTHEDNPTENIWFGSVASVAAEHGIPVMTPNDP 64 Query: 63 KSPQLLTQVQAAQPDFIFSFYYRHMLPVNLLALAKHGAYNMHGSLLPKYRGRVPINWAVL 122 KSP+L V AA+PDFIFSFYYRHMLPV LLALA GAYNMHGSLLPKYRGRVP NWAV+ Sbjct: 65 KSPELHAAVSAARPDFIFSFYYRHMLPVELLALAARGAYNMHGSLLPKYRGRVPTNWAVI 124 Query: 123 HGETETGATLHEMAAKPDAGAIVAQTSVPILPDDTAFEVFGKVVVAAEQTLWRVLPLMLA 182 HGETETGATLHEMAAKPDAGAIVAQT VPILPDDTA +VF KV VAAEQTLWRVLP +LA Sbjct: 125 HGETETGATLHEMAAKPDAGAIVAQTPVPILPDDTASQVFDKVTVAAEQTLWRVLPSLLA 184 Query: 183 GRTPKLPNDLSKGSYFGGRKPEDGRIDWKKPAQHVHNLVRTVAPPYPGAFEEIAGDKITL 242 G P LPND+S GSYFGGRKPEDGRIDW +PAQ V+NL+R VAPPYPGAF ++ G + + Sbjct: 185 GEAPHLPNDISHGSYFGGRKPEDGRIDWTQPAQQVYNLIRAVAPPYPGAFTDLGGHRFMV 244 Query: 243 VKTRLVSASARPTLERSHGAQDKFFEGGRLYARCGDGNYLQI 284 + RL A P RS ++A CGDG + I Sbjct: 245 ARARL----AAPGALRSDLPAGLHVSDNAIFAICGDGRTIAI 282 >ref|YP_004753114.1| polymyxin resistance protein ArnA_FT, UDP-4-amino-4-deoxy-L-arabinose formylase [Collimonas fungivorans Ter331] gb|AEK62291.1| Polymyxin resistance protein ArnA_FT, UDP-4-amino-4-deoxy-L-arabinose formylase [Collimonas fungivorans Ter331] Length = 302 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 203/295 (68%), Positives = 231/295 (78%), Gaps = 2/295 (0%) Query: 1 MNAVVFAYHDVGVRCLKVLLARGVRVALVVTHEDSATENIWFNSVAGVCREYGIPYITPE 60 M AVVFAYH+VGVRCLKVLLARGV +ALVVTHED+ E IWF SV+ +CR++GIP I P Sbjct: 1 MKAVVFAYHNVGVRCLKVLLARGVDIALVVTHEDNPQETIWFESVSALCRQHGIPSIAPT 60 Query: 61 DPKSPQLLTQVQAAQPDFIFSFYYRHMLPVNLLALAKHGAYNMHGSLLPKYRGRVPINWA 120 DP +P+LL QV A QPDFIFSFYYRHMLPV LLALA+HGAYNMHGSLLPKYRGRVPINWA Sbjct: 61 DPAAPELLAQVAALQPDFIFSFYYRHMLPVALLALAQHGAYNMHGSLLPKYRGRVPINWA 120 Query: 121 VLHGETETGATLHEMAAKPDAGAIVAQTSVPILPDDTAFEVFGKVVVAAEQTLWRVLPLM 180 VLHGETETGATLHEMAAKPDAGAIVAQTSVPILPDDTA+EVFGKVVVAAEQTLW LP M Sbjct: 121 VLHGETETGATLHEMAAKPDAGAIVAQTSVPILPDDTAYEVFGKVVVAAEQTLWNALPEM 180 Query: 181 LAGRTPKLPNDLSKGSYFGGRKPEDGRIDWKKPAQHVHNLVRTVAPPYPGAFEEIAGDKI 240 L G P+LPNDLS+GSYFGGRKPEDG+IDW +PA V+NL R VAPPYPGA+ I ++ Sbjct: 181 LKGNIPRLPNDLSQGSYFGGRKPEDGKIDWNRPAHEVYNLYRAVAPPYPGAW-TIVKERT 239 Query: 241 TLVKTRLVSASARPTLERSHGAQDKFFEGGRLYARCGDGNYLQILGIQINDQDVS 295 +V +SA L ++ + R+ CGDG L I + + Q V+ Sbjct: 240 FIVGKAYLSAKLLENLP-ANLPRGLAVVDNRIVGVCGDGRALLINELLADGQTVT 293