BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0008.p         (336 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776426.1| transcription regulator protein [Herbaspiril...   328   6e-88
ref|YP_004753069.1| LysR family transcriptional regulator [Colli...   316   3e-84
ref|ZP_08273444.1| Transcriptional regulator, LysR family [Oxalo...   286   4e-75
gb|AAZ39216.1| putative bacterial transcriptional regulator [Jan...   278   8e-73
ref|YP_001896108.1| LysR family transcriptional regulator [Burkh...   249   4e-64

>ref|YP_003776426.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ64518.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 302

 Score =  328 bits (842), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 169/217 (77%), Positives = 185/217 (85%), Gaps = 10/217 (4%)

Query: 1   MDQFKQISTFVDVAAKGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTN 60
           MDQFKQISTF +VAA+GSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTN
Sbjct: 1   MDQFKQISTFAEVAARGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTN 60

Query: 61  EGAAFLEDCQRILTDLEDAESSVSERSARASGNLLISAPAGFGRQHVAPLVPSFLTEHRD 120
           EGAAFLEDCQRIL DLEDAES+VSERSARASG LLISAPAGFGRQHVAPL+PSFL EHRD
Sbjct: 61  EGAAFLEDCQRILADLEDAESAVSERSARASGQLLISAPAGFGRQHVAPLLPSFLAEHRD 120

Query: 121 VTLTLNLNDRIVDLIGEGVDVAIRIAALTDSNLISVKLADNHRVVVAAPSYLRRHGIPXR 180
           VTLTLNLNDRI D+IGEG+DVAIRIA LTDSNL+SVKLA+NHRV+VAAP+YLRRH     
Sbjct: 121 VTLTLNLNDRIADVIGEGIDVAIRIATLTDSNLVSVKLAENHRVIVAAPAYLRRH----- 175

Query: 181 RPGAPQLPGHQQRRQPARLDAQAARQGQRLQGRRQYG 217
             G PQ P    R     + ++ +++G  L   RQ G
Sbjct: 176 --GTPQSPDELMRHNCLAMSSEGSQRGWTL---RQSG 207


>ref|YP_004753069.1| LysR family transcriptional regulator [Collimonas fungivorans
           Ter331]
 gb|AEK62246.1| Transcriptional regulator, LysR family [Collimonas fungivorans
           Ter331]
          Length = 301

 Score =  316 bits (810), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 154/178 (86%), Positives = 171/178 (96%)

Query: 1   MDQFKQISTFVDVAAKGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTN 60
           MDQFKQISTFV+VAAKGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKI LTN
Sbjct: 1   MDQFKQISTFVEVAAKGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIALTN 60

Query: 61  EGAAFLEDCQRILTDLEDAESSVSERSARASGNLLISAPAGFGRQHVAPLVPSFLTEHRD 120
           EG AFLEDCQRIL+DLE+AES+VSERSA ASG+LLISAPAGFGRQHVAPL+PSFLTEHRD
Sbjct: 61  EGEAFLEDCQRILSDLENAESAVSERSAHASGHLLISAPAGFGRQHVAPLMPSFLTEHRD 120

Query: 121 VTLTLNLNDRIVDLIGEGVDVAIRIAALTDSNLISVKLADNHRVVVAAPSYLRRHGIP 178
           VTLTLNLNDR+VDLIGEG+DVAIRIA+L+DS+L+  KLADN R+VVA+P+Y++RHG P
Sbjct: 121 VTLTLNLNDRVVDLIGEGIDVAIRIASLSDSSLVGAKLADNKRIVVASPAYIKRHGKP 178


>ref|ZP_08273444.1| Transcriptional regulator, LysR family [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF33107.1| Transcriptional regulator, LysR family [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 305

 Score =  286 bits (731), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 143/191 (74%), Positives = 164/191 (85%), Gaps = 3/191 (1%)

Query: 1   MDQFKQISTFVDVAAKGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTN 60
           MDQFKQ+STFV++ AKGS SAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKI LT 
Sbjct: 1   MDQFKQLSTFVEIIAKGSFSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIALTA 60

Query: 61  EGAAFLEDCQRILTDLEDAESSVSERSARASGNLLISAPAGFGRQHVAPLVPSFLTEHRD 120
           EG++FLEDCQRIL +LE AE +VS  +  ASG+L ISAPAGFGRQHVAPL+PSFL EHR+
Sbjct: 61  EGSSFLEDCQRILAELEQAELAVSAGARAASGHLTISAPAGFGRQHVAPLLPSFLAEHRE 120

Query: 121 VTLTLNLNDRIVDLIGEGVDVAIRIAALTDSNLISVKLADNHRVVVAAPSYLRRHGIPXR 180
           V+LTL+LNDRI DL+GEG+DVAIRIAALTDS+++ VKLA+N RVVVA P+YL+RHG P  
Sbjct: 121 VSLTLSLNDRIADLLGEGIDVAIRIAALTDSSMVGVKLAENKRVVVATPAYLKRHGTPQ- 179

Query: 181 RPGAPQLPGHQ 191
                QL GH 
Sbjct: 180 --ALDQLTGHN 188


>gb|AAZ39216.1| putative bacterial transcriptional regulator [Janthinobacterium
           lividum]
          Length = 303

 Score =  278 bits (711), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 142/178 (79%), Positives = 167/178 (93%)

Query: 1   MDQFKQISTFVDVAAKGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTN 60
           M QF+QISTFV+V AKGSLSAAARAEGIAPAMIGRRLDALE+RLGVKLLQRTTRK+ LTN
Sbjct: 1   MGQFRQISTFVEVVAKGSLSAAARAEGIAPAMIGRRLDALEQRLGVKLLQRTTRKLALTN 60

Query: 61  EGAAFLEDCQRILTDLEDAESSVSERSARASGNLLISAPAGFGRQHVAPLVPSFLTEHRD 120
           EGAAFLEDCQRIL +LE+AE++V+ERS +ASG+LLISAPAGFGRQHVAPL+PSF+ EHRD
Sbjct: 61  EGAAFLEDCQRILGELEEAEAAVAERSVKASGHLLISAPAGFGRQHVAPLIPSFVAEHRD 120

Query: 121 VTLTLNLNDRIVDLIGEGVDVAIRIAALTDSNLISVKLADNHRVVVAAPSYLRRHGIP 178
           VT++LNLNDR+VDLIGEG+DVAIRIA+L+DS+L+S KLADN RV+V +P+YL+R G P
Sbjct: 121 VTVSLNLNDRLVDLIGEGIDVAIRIASLSDSSLVSTKLADNQRVLVGSPAYLKRAGTP 178


>ref|YP_001896108.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gb|ACD16884.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 300

 Score =  249 bits (636), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 122/178 (68%), Positives = 150/178 (84%)

Query: 1   MDQFKQISTFVDVAAKGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTN 60
           MD+FKQI TFV VAAKGSLSAAA AEG+APA+IGRR+DALEERLGVKLL RTTRKI LT 
Sbjct: 1   MDRFKQIETFVTVAAKGSLSAAASAEGVAPAIIGRRIDALEERLGVKLLVRTTRKITLTF 60

Query: 61  EGAAFLEDCQRILTDLEDAESSVSERSARASGNLLISAPAGFGRQHVAPLVPSFLTEHRD 120
           EG+AFLEDCQRI+ D+++AE+SVS    +ASG+L +SAPAGFGR+HVAPLVP+F   H D
Sbjct: 61  EGSAFLEDCQRIIHDMQNAEASVSAGGVKASGHLRLSAPAGFGRRHVAPLVPAFTVAHPD 120

Query: 121 VTLTLNLNDRIVDLIGEGVDVAIRIAALTDSNLISVKLADNHRVVVAAPSYLRRHGIP 178
           V++TL+L+DR+VDL+ EG D A+R+  L DS+L+S+KL +N RV VA+PSYL R G P
Sbjct: 121 VSITLDLSDRLVDLVNEGFDCAVRLGELPDSSLVSLKLGENRRVCVASPSYLSRRGAP 178