BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0006.p         (67 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776424.1| cold shock-like transcription regulator prot...   133   8e-30
gb|AAZ39217.1| cold shock transcription regulator [Janthinobacte...   130   8e-29
ref|YP_001100047.1| RNA chaperone [Herminiimonas arsenicoxydans]...   128   2e-28
ref|YP_004693688.1| cold-shock DNA-binding domain-containing pro...   125   2e-27
ref|YP_004752459.1| cold shock protein [Collimonas fungivorans T...   124   4e-27

>ref|YP_003776424.1| cold shock-like transcription regulator protein [Herbaspirillum
          seropedicae SmR1]
 gb|ADJ64516.1| cold shock-like transcription regulator protein [Herbaspirillum
          seropedicae SmR1]
          Length = 68

 Score =  133 bits (335), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 64/66 (96%), Positives = 65/66 (98%)

Query: 1  MATGIVKWFNDSKGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQ 60
          MATG VKWFND+KGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQ
Sbjct: 1  MATGTVKWFNDAKGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQ 60

Query: 61 ASNIVP 66
          ASNIVP
Sbjct: 61 ASNIVP 66


>gb|AAZ39217.1| cold shock transcription regulator [Janthinobacterium lividum]
 gb|ADX95748.1| cold shock-like protein CspD [Janthinobacterium sp. Ant5-2]
          Length = 67

 Score =  130 bits (326), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 63/66 (95%), Positives = 64/66 (96%)

Query: 1  MATGIVKWFNDSKGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQ 60
          MATGIVKWFNDSKGFGFITPDEGGEDLFAHFSAIQSNGFKSL+ENQRVSFEVT GPKGKQ
Sbjct: 1  MATGIVKWFNDSKGFGFITPDEGGEDLFAHFSAIQSNGFKSLQENQRVSFEVTAGPKGKQ 60

Query: 61 ASNIVP 66
          ASNI P
Sbjct: 61 ASNIQP 66


>ref|YP_001100047.1| RNA chaperone [Herminiimonas arsenicoxydans]
 ref|YP_001353208.1| cold shock transcription regulator protein [Janthinobacterium sp.
          Marseille]
 ref|ZP_08273438.1| Cold shock protein CspA [Oxalobacteraceae bacterium IMCC9480]
 emb|CAL61922.1| Cold shock-like protein cspE (CSP-E) [Herminiimonas
          arsenicoxydans]
 gb|ABR91729.1| cold shock transcription regulator protein [Janthinobacterium sp.
          Marseille]
 gb|EGF33101.1| Cold shock protein CspA [Oxalobacteraceae bacterium IMCC9480]
          Length = 67

 Score =  128 bits (322), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/66 (93%), Positives = 64/66 (96%)

Query: 1  MATGIVKWFNDSKGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQ 60
          MATGIVKWFNDSKGFGFITPDEGGEDLFAHFSAIQS+GFKSL+ENQRVSFEVT GPKGKQ
Sbjct: 1  MATGIVKWFNDSKGFGFITPDEGGEDLFAHFSAIQSSGFKSLQENQRVSFEVTAGPKGKQ 60

Query: 61 ASNIVP 66
          ASNI P
Sbjct: 61 ASNIQP 66


>ref|YP_004693688.1| cold-shock DNA-binding domain-containing protein [Nitrosomonas
          sp. Is79A3]
 gb|AEJ00289.1| cold-shock DNA-binding domain protein [Nitrosomonas sp. Is79A3]
          Length = 67

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/67 (88%), Positives = 64/67 (95%)

Query: 1  MATGIVKWFNDSKGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQ 60
          MATGIVKWFND+KGFGFITPD GGEDLFAHFSAI SNGFKSL+E QRV+F+VTTGPKGKQ
Sbjct: 1  MATGIVKWFNDAKGFGFITPDNGGEDLFAHFSAINSNGFKSLREAQRVTFDVTTGPKGKQ 60

Query: 61 ASNIVPQ 67
          ASNIVP+
Sbjct: 61 ASNIVPE 67


>ref|YP_004752459.1| cold shock protein [Collimonas fungivorans Ter331]
 gb|AEK61636.1| Cold shock protein [Collimonas fungivorans Ter331]
          Length = 67

 Score =  124 bits (312), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 60/64 (93%), Positives = 62/64 (96%)

Query: 1  MATGIVKWFNDSKGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQ 60
          MATGIVKWFNDSKGFGFITPDEGGEDLFAHFSAI S+GFKSL+ENQRVSFEVT GPKGKQ
Sbjct: 1  MATGIVKWFNDSKGFGFITPDEGGEDLFAHFSAINSSGFKSLQENQRVSFEVTAGPKGKQ 60

Query: 61 ASNI 64
          ASNI
Sbjct: 61 ASNI 64