BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0030.p (307 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001352004.1| methyl-accepting chemotaxis protein [Janthin... 299 4e-79 ref|YP_002946062.1| methyl-accepting chemotaxis sensory transduc... 293 3e-77 ref|YP_004753309.1| methyl-accepting chemotaxis protein [Collimo... 244 2e-62 ref|YP_523479.1| methyl-accepting chemotaxis sensory transducer ... 209 5e-52 ref|YP_004682082.1| hypothetical protein CNE_2c18940 [Cupriavidu... 209 7e-52 >ref|YP_001352004.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] gb|ABR89897.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 549 Score = 299 bits (766), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 159/295 (53%), Positives = 211/295 (71%) Query: 1 MKQLSSMRISSRLIFGFAIVLILATISTSIGLINARRNAEATRAMMELPLAKERLVADWF 60 M LS+ RI +RL GF +VL L+ ST+I LI+AR+NAEATR MME PLAKER+ +DW+ Sbjct: 1 MSFLSNFRIGTRLAIGFILVLALSVASTAIALIHARQNAEATRLMMEKPLAKERITSDWY 60 Query: 61 VLTYSAIVRTSMIARSSDANLADTFKEAIAASVVSGSGIIKKIEPRLSSEDEKALFKEII 120 V YSAI RTSMIARS+D L+D F + IA S GS ++K +E ++S+ E+ L+++ I Sbjct: 61 VFIYSAIARTSMIARSTDDTLSDVFADVIADSTKQGSALLKSLEGMITSDAERKLYQQTI 120 Query: 121 AARNKYQAAKELVMNTRKTGDGAAAEKAYKDVFEPASKAYADKVNALLAMQRKAIDQMAV 180 R YQ KE VMN +K G+ A AE+AY +F PA+KAY +KV L++QRKAIDQ++ Sbjct: 121 ELRKAYQKGKEDVMNAKKGGNKAEAERAYLQIFLPAAKAYQEKVLEFLSVQRKAIDQISR 180 Query: 181 DIDRSSTHGMQLMMTLGVLLVLISVVAVLIISRSITTPLKRALEVAKMVAAGDLTASIEK 240 DID + + LM+ LGVLL+L+ ++I+RSIT PL+ A++VA A GDLT I K Sbjct: 181 DIDDAHQRSLNLMIGLGVLLILLGAACAIVITRSITKPLRSAIDVASRAADGDLTGDIGK 240 Query: 241 HGKDEIAELMQALDEMNTGLRKIVSEVQVGTDSISTAANEIASGNFDLSSRTEQQ 295 KDEI +LM+AL MN GL+KIV++V+ GTD I+TA+ EIA GN DLSSRTEQQ Sbjct: 241 PSKDEIGDLMRALGGMNDGLKKIVNDVKAGTDFINTASAEIAHGNLDLSSRTEQQ 295 >ref|YP_002946062.1| methyl-accepting chemotaxis sensory transducer [Variovorax paradoxus S110] gb|ACS20796.1| methyl-accepting chemotaxis sensory transducer [Variovorax paradoxus S110] Length = 516 Score = 293 bits (749), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 147/295 (49%), Positives = 205/295 (69%) Query: 1 MKQLSSMRISSRLIFGFAIVLILATISTSIGLINARRNAEATRAMMELPLAKERLVADWF 60 M LS+MRI +RL GF +VL L +S + L+ AR NAEATR MM+ PLAKERL++DW+ Sbjct: 1 MNFLSNMRIGTRLAIGFGLVLALTLVSAAFALVTARSNAEATRQMMQSPLAKERLISDWY 60 Query: 61 VLTYSAIVRTSMIARSSDANLADTFKEAIAASVVSGSGIIKKIEPRLSSEDEKALFKEII 120 VLTYSAI RT+MIAR++D L TF + I+ SV G + K+E L ++ EK+ FK I+ Sbjct: 61 VLTYSAIARTAMIARTTDETLPVTFADVISDSVKKGGETMAKVEALLVTDVEKSTFKSIV 120 Query: 121 AARNKYQAAKELVMNTRKTGDGAAAEKAYKDVFEPASKAYADKVNALLAMQRKAIDQMAV 180 R KYQAAK+ V + +G AE +K++F+PA+KAY ++V LLA++RKAID M+ Sbjct: 121 ELRAKYQAAKDAVQKAKASGTPGEAEAVFKNIFQPAAKAYENRVLELLALERKAIDDMSH 180 Query: 181 DIDRSSTHGMQLMMTLGVLLVLISVVAVLIISRSITTPLKRALEVAKMVAAGDLTASIEK 240 ID ++ G L + L VL +LI +I+RS+T PL RA++VA+ VA+GDL + IE Sbjct: 181 GIDEANERGFNLRIVLTVLTLLIGAACAFLIARSVTQPLGRAVKVAETVASGDLGSVIEA 240 Query: 241 HGKDEIAELMQALDEMNTGLRKIVSEVQVGTDSISTAANEIASGNFDLSSRTEQQ 295 +DE +LMQAL MN L ++V EV+ GTD+I+TA+ +IA+GN DLS+RTE+Q Sbjct: 241 DSRDETGQLMQALKHMNESLARVVGEVRQGTDTIATASGQIAAGNRDLSARTEEQ 295 >ref|YP_004753309.1| methyl-accepting chemotaxis protein [Collimonas fungivorans Ter331] gb|AEK62486.1| methyl-accepting chemotaxis protein [Collimonas fungivorans Ter331] Length = 572 Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 140/290 (48%), Positives = 191/290 (65%) Query: 6 SMRISSRLIFGFAIVLILATISTSIGLINARRNAEATRAMMELPLAKERLVADWFVLTYS 65 ++++ +R+ GFAIVL L+ +S +IG+ N R+ A T+ MME PLAKER+V+DW VLT + Sbjct: 5 NLKVGTRMGIGFAIVLSLSVMSIAIGIWNLRQVAMETQRMMESPLAKERIVSDWSVLTNA 64 Query: 66 AIVRTSMIARSSDANLADTFKEAIAASVVSGSGIIKKIEPRLSSEDEKALFKEIIAARNK 125 AI RTS I +S+D LA TF E I AS G+ I +EP L+S EK + I R K Sbjct: 65 AIARTSFIVKSTDDTLATTFAEDIDASAKKGTEIQNSLEPLLTSSLEKEKYALIKTLREK 124 Query: 126 YQAAKELVMNTRKTGDGAAAEKAYKDVFEPASKAYADKVNALLAMQRKAIDQMAVDIDRS 185 YQ +K M ++ G A K Y F P +K+Y ++ A L++QRK IDQ I Sbjct: 125 YQQSKVAAMKAKQGGKAEEASKIYNSEFMPTAKSYQGELFAFLSLQRKNIDQTGQQIAEL 184 Query: 186 STHGMQLMMTLGVLLVLISVVAVLIISRSITTPLKRALEVAKMVAAGDLTASIEKHGKDE 245 + LM+ LGVL++++ V +ISRSIT PL A++VA+ VA+GDL++ IE DE Sbjct: 185 YSRSFNLMLLLGVLVIVLGAVCAFLISRSITRPLGEAIKVAQTVASGDLSSRIEVKTTDE 244 Query: 246 IAELMQALDEMNTGLRKIVSEVQVGTDSISTAANEIASGNFDLSSRTEQQ 295 +LMQAL +MN LRK+VSEV+ GTD+I+TA+N+IASGN DLSSRTEQQ Sbjct: 245 TGQLMQALKDMNDSLRKVVSEVRSGTDTIATASNQIASGNLDLSSRTEQQ 294 >ref|YP_523479.1| methyl-accepting chemotaxis sensory transducer [Rhodoferax ferrireducens T118] gb|ABD69948.1| methyl-accepting chemotaxis sensory transducer [Rhodoferax ferrireducens T118] Length = 583 Score = 209 bits (531), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 118/307 (38%), Positives = 175/307 (57%) Query: 1 MKQLSSMRISSRLIFGFAIVLILATISTSIGLINARRNAEATRAMMELPLAKERLVADWF 60 MK +SM+I RL FGFA+VL A + T IG+ ATR M PLAKERL++DW Sbjct: 1 MKIFASMKIGKRLGFGFAVVLAFAVLITGIGVWQLNALGNATREMTREPLAKERLISDWS 60 Query: 61 VLTYSAIVRTSMIARSSDANLADTFKEAIAASVVSGSGIIKKIEPRLSSEDEKALFKEII 120 A++RT+ +A+SSD +L F A S S ++K+IEP LSS++EK LF ++ Sbjct: 61 RNINVAVIRTTAVAKSSDPSLVPFFSTNAAEITKSTSALLKQIEPLLSSQEEKDLFSKVS 120 Query: 121 AARNKYQAAKELVMNTRKTGDGAAAEKAYKDVFEPASKAYADKVNALLAMQRKAIDQMAV 180 R Y ++++ V + G A + + + PA+ Y V+ L +QRK +D AV Sbjct: 121 DVRKAYLSSRDQVTKLKADGQADEANRLLESTYIPAADNYMKLVSEFLGLQRKNLDAKAV 180 Query: 181 DIDRSSTHGMQLMMTLGVLLVLISVVAVLIISRSITTPLKRALEVAKMVAAGDLTASIEK 240 +I T ++ L L++ V+ +++ IT PL A+ VA+ VA GDL I+ Sbjct: 181 EISGIETTSRNYLVALAALVLTFGVICAWLLTVGITGPLTNAVAVARRVADGDLATDIQT 240 Query: 241 HGKDEIAELMQALDEMNTGLRKIVSEVQVGTDSISTAANEIASGNFDLSSRTEQQXLVMT 300 GKDE A+L+QAL M L +IV V+ G++ ++TA+ EIA GN DLS+RTEQQ + Sbjct: 241 EGKDETAQLLQALSAMKDNLARIVGNVRQGSEGVATASAEIAQGNNDLSARTEQQASALE 300 Query: 301 ARACCIQ 307 A ++ Sbjct: 301 ETAASME 307 >ref|YP_004682082.1| hypothetical protein CNE_2c18940 [Cupriavidus necator N-1] gb|AEI80850.1| methyl-accepting chemotaxis protein I [Cupriavidus necator N-1] Length = 513 Score = 209 bits (531), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 109/292 (37%), Positives = 183/292 (62%) Query: 4 LSSMRISSRLIFGFAIVLILATISTSIGLINARRNAEATRAMMELPLAKERLVADWFVLT 63 + ++ I RL GF +VL+L+ + T G++ ++ AE T AMM+ PL KERLV+DW+ L Sbjct: 1 MKNLGIGVRLGIGFGVVLLLSALMTVFGMMRLQQVAERTHAMMQQPLTKERLVSDWYRLM 60 Query: 64 YSAIVRTSMIARSSDANLADTFKEAIAASVVSGSGIIKKIEPRLSSEDEKALFKEIIAAR 123 ++++ RT+ +ARS+D +L F AS+ + + K++P LSS +EKA F++I++ R Sbjct: 61 HTSVRRTTAVARSADPSLGAFFAAETKASIEGIAALRDKLQPMLSSAEEKAAFQKILSVR 120 Query: 124 NKYQAAKELVMNTRKTGDGAAAEKAYKDVFEPASKAYADKVNALLAMQRKAIDQMAVDID 183 + Y ++ + ++ G A + + F PA AY ++ LL +QR +ID A DI+ Sbjct: 121 DPYNNGRDKITKLKQEGLTEEANQVLEKDFVPAGDAYLGEIQKLLDIQRASIDATARDIN 180 Query: 184 RSSTHGMQLMMTLGVLLVLISVVAVLIISRSITTPLKRALEVAKMVAAGDLTASIEKHGK 243 + ++ LGV+++ I + + ++ IT PL RA+ VA+ VA+GDLT+ I+ + Sbjct: 181 GIYVNARNSLIGLGVVVLAIGIAFSVWLTAGITRPLHRAVAVARTVASGDLTSRIDVDSR 240 Query: 244 DEIAELMQALDEMNTGLRKIVSEVQVGTDSISTAANEIASGNFDLSSRTEQQ 295 DE +L+QAL +MN + +IV +V+ GT+SI + ++IA+GN DLS RTE+Q Sbjct: 241 DETGQLLQALADMNANILRIVRQVRAGTESIVSGTSQIAAGNTDLSQRTEEQ 292