BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0023.p (377 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001101466.1| putative cold-shock DeaD box ATP-dependent R... 636 e-180 ref|YP_001355159.1| ATP-dependent RNA helicase [Janthinobacteriu... 630 e-178 ref|YP_364705.1| ATP-dependent RNA helicase [Xanthomonas campest... 557 e-157 ref|ZP_08180966.1| ATP-dependent RNA helicase CsdA [Xanthomonas ... 557 e-156 ref|ZP_08182616.1| ATP-dependent RNA helicase CsdA [Xanthomonas ... 556 e-156 >ref|YP_001101466.1| putative cold-shock DeaD box ATP-dependent RNA helicase (partial match) [Herminiimonas arsenicoxydans] emb|CAL63345.1| putative ATP-dependent RNA helicase DeaD-like [Herminiimonas arsenicoxydans] Length = 826 Score = 636 bits (1640), Expect = e-180, Method: Compositional matrix adjust. Identities = 307/342 (89%), Positives = 327/342 (95%) Query: 1 MSEAPLPLFSDLNLSEPLLRVLKELGYESPSPIQAATIPILLSNRDVLGQAQTGTGKTAA 60 MS+ PLFSDLNLSEPLLRVLKELGYE+PSPIQAATIP+LL+N DVLGQAQTGTGKTAA Sbjct: 1 MSDPSFPLFSDLNLSEPLLRVLKELGYEAPSPIQAATIPLLLNNSDVLGQAQTGTGKTAA 60 Query: 61 FALPILSRIDIRQTVPQALVLAPTRELAIQVAEAFQRYATHIPGFHVLPIYGGQSYGPQL 120 FALPILSRIDI+QT PQALVLAPTRELAIQVAEAFQRYA+HIPGFHVLPIYGGQSYG QL Sbjct: 61 FALPILSRIDIKQTTPQALVLAPTRELAIQVAEAFQRYASHIPGFHVLPIYGGQSYGAQL 120 Query: 121 SALRRGVHVVVGTPGRVIDHLDKGSLDLSQLKTMVLDEADEMLRMGFIDDVESILQKTPA 180 SALRRGVHVVVGTPGRVIDHL+KGSLDLS+LKTMVLDEADEMLRMGFIDDVE+ILQKTP Sbjct: 121 SALRRGVHVVVGTPGRVIDHLEKGSLDLSKLKTMVLDEADEMLRMGFIDDVETILQKTPE 180 Query: 181 TRQTTLFSATMPSAIKRIAQTYLRDPAEVTIAAKTGTAENIRQRYWLVSGMHKLDALTRI 240 RQT LFSATMPSAIKRIA TYLRDP +T+AAKTGTA+NIRQRYWLVSGM KL+ALTRI Sbjct: 181 ARQTALFSATMPSAIKRIATTYLRDPELITVAAKTGTADNIRQRYWLVSGMQKLEALTRI 240 Query: 241 LEVEPFDGLIIFSRTKLGTEELAGKLKARGFAAAAINGDIQQQQRERTIQQLKDGQIDIL 300 LE E FDG+IIF+RTKLGTEELAGKL+ARGF+AAAINGDIQQQQRERTIQQLKDG+IDIL Sbjct: 241 LEAETFDGMIIFARTKLGTEELAGKLQARGFSAAAINGDIQQQQRERTIQQLKDGKIDIL 300 Query: 301 IATDVAARGLDVERISHVINYDVPYDPESYTHRIGRTGRAGR 342 +ATDVAARGLDVERISHVINYDVP+DPESYTHRIGRTGRAGR Sbjct: 301 VATDVAARGLDVERISHVINYDVPHDPESYTHRIGRTGRAGR 342 >ref|YP_001355159.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille] gb|ABR89586.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille] Length = 778 Score = 630 bits (1624), Expect = e-178, Method: Compositional matrix adjust. Identities = 304/342 (88%), Positives = 327/342 (95%) Query: 1 MSEAPLPLFSDLNLSEPLLRVLKELGYESPSPIQAATIPILLSNRDVLGQAQTGTGKTAA 60 MSE PLF+DL LSEPLLRVL+ELGYESPSPIQAATIP+LL+NRDVLGQAQTGTGKTA+ Sbjct: 1 MSEPSFPLFADLKLSEPLLRVLQELGYESPSPIQAATIPLLLNNRDVLGQAQTGTGKTAS 60 Query: 61 FALPILSRIDIRQTVPQALVLAPTRELAIQVAEAFQRYATHIPGFHVLPIYGGQSYGPQL 120 FALPIL+RIDI+QT PQALVLAPTRELAIQVAEAFQRYAT+IPGFHVLPIYGGQSYG QL Sbjct: 61 FALPILARIDIKQTTPQALVLAPTRELAIQVAEAFQRYATYIPGFHVLPIYGGQSYGAQL 120 Query: 121 SALRRGVHVVVGTPGRVIDHLDKGSLDLSQLKTMVLDEADEMLRMGFIDDVESILQKTPA 180 SALRRGVHVVVGTPGRVIDHL+KGSLDLS++KTMVLDEADEMLRMGFIDDVE+ILQKTP Sbjct: 121 SALRRGVHVVVGTPGRVIDHLEKGSLDLSRIKTMVLDEADEMLRMGFIDDVETILQKTPE 180 Query: 181 TRQTTLFSATMPSAIKRIAQTYLRDPAEVTIAAKTGTAENIRQRYWLVSGMHKLDALTRI 240 +RQT LFSATMPSAIKRIA TYLRDP +T+AAKTGTA+NIRQRYWLVSGM KLDALTRI Sbjct: 181 SRQTALFSATMPSAIKRIATTYLRDPDLITVAAKTGTADNIRQRYWLVSGMQKLDALTRI 240 Query: 241 LEVEPFDGLIIFSRTKLGTEELAGKLKARGFAAAAINGDIQQQQRERTIQQLKDGQIDIL 300 LE E FDG+IIF+RTKLGTEELA KL+ARGF+AAAINGDIQQQQRERTIQQLKDG+IDIL Sbjct: 241 LEAENFDGMIIFARTKLGTEELASKLQARGFSAAAINGDIQQQQRERTIQQLKDGKIDIL 300 Query: 301 IATDVAARGLDVERISHVINYDVPYDPESYTHRIGRTGRAGR 342 +ATDVAARGLDVERISHVINYDVP+DPESYTHRIGRTGRAGR Sbjct: 301 VATDVAARGLDVERISHVINYDVPHDPESYTHRIGRTGRAGR 342 >ref|YP_364705.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria str. 85-10] emb|CAJ24661.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 648 Score = 557 bits (1436), Expect = e-157, Method: Compositional matrix adjust. Identities = 271/343 (79%), Positives = 305/343 (88%), Gaps = 1/343 (0%) Query: 2 SEAPLPLFSDLNLSEPLLRVLKELGYESPSPIQAATIPILLSNRDVLGQAQTGTGKTAAF 61 S APL LF+DL LS+ +++ + +GYESPSPIQAATIP LL+ RDVLGQAQTGTGKTAAF Sbjct: 21 SSAPL-LFADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAF 79 Query: 62 ALPILSRIDIRQTVPQALVLAPTRELAIQVAEAFQRYATHIPGFHVLPIYGGQSYGPQLS 121 ALP+LS D+ Q PQALVLAPTRELAIQVAEAFQ+YA IPGF VLP+YGGQ Y QLS Sbjct: 80 ALPVLSNADLHQVKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLS 139 Query: 122 ALRRGVHVVVGTPGRVIDHLDKGSLDLSQLKTMVLDEADEMLRMGFIDDVESILQKTPAT 181 AL+RGVHVVVGTPGRVIDHLD+G+LDLSQLKT+VLDEADEMLRMGFIDDVE++L+K PA Sbjct: 140 ALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPAQ 199 Query: 182 RQTTLFSATMPSAIKRIAQTYLRDPAEVTIAAKTGTAENIRQRYWLVSGMHKLDALTRIL 241 RQ LFSATMP AI+RIAQTYL+DPAEVTIAAKT T+ NIRQRYW VSG+HKLDALTRIL Sbjct: 200 RQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRIL 259 Query: 242 EVEPFDGLIIFSRTKLGTEELAGKLKARGFAAAAINGDIQQQQRERTIQQLKDGQIDILI 301 EVEPFDG+IIF+RTK TEELA KL+ARG AAAAINGD+QQ RE+TI QLKDG++DIL+ Sbjct: 260 EVEPFDGMIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDILV 319 Query: 302 ATDVAARGLDVERISHVINYDVPYDPESYTHRIGRTGRAGRDN 344 ATDVAARGLDVERISHV+NYD+PYD ESY HRIGRTGRAGR+ Sbjct: 320 ATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRNG 362 >ref|ZP_08180966.1| ATP-dependent RNA helicase CsdA [Xanthomonas vesicatoria ATCC 35937] gb|EGD06800.1| ATP-dependent RNA helicase CsdA [Xanthomonas vesicatoria ATCC 35937] Length = 636 Score = 557 bits (1435), Expect = e-156, Method: Compositional matrix adjust. Identities = 270/343 (78%), Positives = 305/343 (88%), Gaps = 1/343 (0%) Query: 2 SEAPLPLFSDLNLSEPLLRVLKELGYESPSPIQAATIPILLSNRDVLGQAQTGTGKTAAF 61 S APL LF+DL LS+ +++ + +GYESPSPIQAATIP LL+ RDVLGQAQTGTGKTAAF Sbjct: 5 SSAPL-LFADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAF 63 Query: 62 ALPILSRIDIRQTVPQALVLAPTRELAIQVAEAFQRYATHIPGFHVLPIYGGQSYGPQLS 121 ALP+LS D+ Q PQALVLAPTRELAIQVAEAFQ+YA IPGF VLP+YGGQ Y QLS Sbjct: 64 ALPVLSNADLNQLKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLS 123 Query: 122 ALRRGVHVVVGTPGRVIDHLDKGSLDLSQLKTMVLDEADEMLRMGFIDDVESILQKTPAT 181 AL+RGVHVVVGTPGRVIDHLD+G+LDLSQLKT+VLDEADEMLRMGFIDDVE++L+K P Sbjct: 124 ALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEK 183 Query: 182 RQTTLFSATMPSAIKRIAQTYLRDPAEVTIAAKTGTAENIRQRYWLVSGMHKLDALTRIL 241 RQ LFSATMP AI+RIAQTYL+DPAEVTIAAKT T+ NIRQRYW VSG+HKLDALTRIL Sbjct: 184 RQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRIL 243 Query: 242 EVEPFDGLIIFSRTKLGTEELAGKLKARGFAAAAINGDIQQQQRERTIQQLKDGQIDILI 301 EVEPFDG+IIF+RTK GTEELA KL+ARG AAAAINGD+QQ RE+TI QLKDG++DIL+ Sbjct: 244 EVEPFDGMIIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILV 303 Query: 302 ATDVAARGLDVERISHVINYDVPYDPESYTHRIGRTGRAGRDN 344 ATDVAARGLDVER+SHV+NYD+PYD ESY HRIGRTGRAGR+ Sbjct: 304 ATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNG 346 >ref|ZP_08182616.1| ATP-dependent RNA helicase CsdA [Xanthomonas gardneri ATCC 19865] gb|EGD19710.1| ATP-dependent RNA helicase CsdA [Xanthomonas gardneri ATCC 19865] Length = 643 Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust. Identities = 270/341 (79%), Positives = 304/341 (89%), Gaps = 1/341 (0%) Query: 2 SEAPLPLFSDLNLSEPLLRVLKELGYESPSPIQAATIPILLSNRDVLGQAQTGTGKTAAF 61 S APL LF+DL LS+ +++ + +GYESPSPIQAATIP LL+ RDVLGQAQTGTGKTAAF Sbjct: 5 SSAPL-LFADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAF 63 Query: 62 ALPILSRIDIRQTVPQALVLAPTRELAIQVAEAFQRYATHIPGFHVLPIYGGQSYGPQLS 121 ALP+LS D+ Q PQALVLAPTRELAIQVAEAFQ+YA IPGF VLP+YGGQ Y QLS Sbjct: 64 ALPVLSNADLNQLKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLS 123 Query: 122 ALRRGVHVVVGTPGRVIDHLDKGSLDLSQLKTMVLDEADEMLRMGFIDDVESILQKTPAT 181 AL+RGVHVVVGTPGRVIDHLD+G+LDLSQLKT+VLDEADEMLRMGFIDDVE++L+K P Sbjct: 124 ALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEK 183 Query: 182 RQTTLFSATMPSAIKRIAQTYLRDPAEVTIAAKTGTAENIRQRYWLVSGMHKLDALTRIL 241 RQ LFSATMP AI+RIAQTYL+DPAEVTIAAKT T+ NIRQRYW VSG+HKLDALTRIL Sbjct: 184 RQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRIL 243 Query: 242 EVEPFDGLIIFSRTKLGTEELAGKLKARGFAAAAINGDIQQQQRERTIQQLKDGQIDILI 301 EVEPFDG+IIF+RTK GTEELA KL+ARG AAAAINGD+QQ RE+TI QLKDG++DIL+ Sbjct: 244 EVEPFDGMIIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILV 303 Query: 302 ATDVAARGLDVERISHVINYDVPYDPESYTHRIGRTGRAGR 342 ATDVAARGLDVER+SHV+NYD+PYD ESY HRIGRTGRAGR Sbjct: 304 ATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGR 344