BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0014.p (527 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001353497.1| ABC-type branched-chain amino acid transport... 941 0.0 ref|YP_003778088.1| urea ABC transporter permease [Herbaspirillu... 916 0.0 ref|YP_004753496.1| urea ABC transporter permease [Collimonas fu... 877 0.0 ref|ZP_06689559.1| branched-chain amino acid ABC superfamily ATP... 634 e-179 gb|EGP47551.1| urea ABC transporter permease protein UrtB 2 [Ach... 621 e-176 >ref|YP_001353497.1| ABC-type branched-chain amino acid transport system permease protein [Janthinobacterium sp. Marseille] gb|ABR89024.1| ABC-type branched-chain amino acid transport system permease protein [Janthinobacterium sp. Marseille] Length = 538 Score = 941 bits (2432), Expect = 0.0, Method: Compositional matrix adjust. Identities = 477/527 (90%), Positives = 500/527 (94%) Query: 1 LLTGWLCTQAISAHAAIDPALLKPLAGDDPDARIAAVTQIAALANADAQKILNAINSDAL 60 +L+ WLCTQAISAHAAIDPALLKPLAGDDPDARIAAVT+IAALAN DAQKIL AIN+DAL Sbjct: 12 MLSLWLCTQAISAHAAIDPALLKPLAGDDPDARIAAVTEIAALANQDAQKILQAINNDAL 71 Query: 61 YATPAGDVLIIEDSDAFNPATDKTGPAPDDAEGITVNNRLRGVVEGALSGLKLFSPDRAT 120 YATPAGDV II+ SDAFNPATDKTGPAPDDAEGITVNNRLRG VEGALSGL+LF+ DR Sbjct: 72 YATPAGDVFIIDGSDAFNPATDKTGPAPDDAEGITVNNRLRGAVEGALSGLQLFAQDRNA 131 Query: 121 RLTAATELLKTADAAQTPLISKALAAEKDPQIQEVLKQVVATANLHAPDAATRKAAVKAL 180 RLTAA +LLKTAD AQ PLI+KAL E DP I+E+L+QVVATANLHAPDAATR+AAVK L Sbjct: 132 RLTAANDLLKTADPAQIPLINKALEKESDPAIRELLQQVVATANLHAPDAATRQAAVKTL 191 Query: 181 AETTNASLKPVLEQMLAKNPDGSYVEADEGVRIEAVRTVSALDRHLTITEFVGKLFYGVS 240 A T+NASLKP+LEQMLAKNPDGSYVE D GVR EAV T+SAL+RHLTITEFVGKLFYG+S Sbjct: 192 ANTSNASLKPILEQMLAKNPDGSYVEPDAGVRSEAVNTLSALNRHLTITEFVGKLFYGIS 251 Query: 241 LGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFPGAIDAYIVVAL 300 LGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFP AIDAY++VAL Sbjct: 252 LGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFPEAIDAYLLVAL 311 Query: 301 PAAFIVAAAVGIALERLVIRWLYGRPLETLLCTWGISLMLMQAVRSIFGAQNVEVANPSW 360 PAAFIVAAAVGIALERLVIRWLYGRPLETLLCTWGISL+LMQ VRSIFGAQNVEVANPSW Sbjct: 312 PAAFIVAAAVGIALERLVIRWLYGRPLETLLCTWGISLILMQGVRSIFGAQNVEVANPSW 371 Query: 361 MSGGITVLGSLVLSYNRIVIIFFALFVVFAVWLILNKTRLGLFVRAVTQNRRMADCVGVS 420 MSGG+TVLGSLVLSYNRIVIIFFALFVV AVWLILNKTRLGLFVRAV QNRRMA CVGVS Sbjct: 372 MSGGVTVLGSLVLSYNRIVIIFFALFVVLAVWLILNKTRLGLFVRAVMQNRRMAACVGVS 431 Query: 421 TGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLGQGYIVDSFMVVVLGGVGQLAGTVIAA 480 TGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLGQGYIVDSFMVVVLGGVGQLAGTVIAA Sbjct: 432 TGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLGQGYIVDSFMVVVLGGVGQLAGTVIAA 491 Query: 481 FGLGEVNKFLEPVAGAVLAKIAILVFIIVFIQKRPQGLFALKGRSVE 527 FGLGEVNKFLEPVAGAVLAKIAILVFII+FIQKRPQGLFALKGRSVE Sbjct: 492 FGLGEVNKFLEPVAGAVLAKIAILVFIIIFIQKRPQGLFALKGRSVE 538 >ref|YP_003778088.1| urea ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ66180.1| ABC-type urea transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 538 Score = 916 bits (2368), Expect = 0.0, Method: Compositional matrix adjust. Identities = 466/528 (88%), Positives = 490/528 (92%), Gaps = 1/528 (0%) Query: 1 LLTGWLCTQAISAHAAIDPALLKPLAGDDPDARIAAVTQIAALANADAQKILNAINSDAL 60 LL WLC A++A AAIDPALLKPL GDDPDARI AV QIAALAN DA KILNA+NSDAL Sbjct: 11 LLATWLCVHALAASAAIDPALLKPLGGDDPDARIDAVNQIAALANDDALKILNALNSDAL 70 Query: 61 YATPAGDVLIIEDS-DAFNPATDKTGPAPDDAEGITVNNRLRGVVEGALSGLKLFSPDRA 119 Y TPAGDVLI++++ AFNPATDK+GPAPDDAEGITVNNRLRG V+GALSGLKL SP R Sbjct: 71 YVTPAGDVLIVDEAGQAFNPATDKSGPAPDDAEGITVNNRLRGAVDGALSGLKLLSPQRE 130 Query: 120 TRLTAATELLKTADAAQTPLISKALAAEKDPQIQEVLKQVVATANLHAPDAATRKAAVKA 179 RL AA ELLK AD AQ PLI KALA E D QI++VL+QV ATANLH+PD A R+AAVK Sbjct: 131 QRLAAANELLKNADPAQIPLIVKALAKESDAQIKDVLQQVQATANLHSPDPAARRAAVKT 190 Query: 180 LAETTNASLKPVLEQMLAKNPDGSYVEADEGVRIEAVRTVSALDRHLTITEFVGKLFYGV 239 LA+TTNASLKP LE MLAK+PDGSYVE DEGVR+EAVRT++ALDRHL I +F GKLFYGV Sbjct: 191 LADTTNASLKPALENMLAKHPDGSYVEPDEGVRVEAVRTLAALDRHLAIVDFAGKLFYGV 250 Query: 240 SLGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFPGAIDAYIVVA 299 SLGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFPGAIDAY+VVA Sbjct: 251 SLGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFPGAIDAYLVVA 310 Query: 300 LPAAFIVAAAVGIALERLVIRWLYGRPLETLLCTWGISLMLMQAVRSIFGAQNVEVANPS 359 LPAAFIVAAAVGIALERLVIRWLYGRPLETLLCTWGISLMLMQ VRSIFGAQNVEVANPS Sbjct: 311 LPAAFIVAAAVGIALERLVIRWLYGRPLETLLCTWGISLMLMQGVRSIFGAQNVEVANPS 370 Query: 360 WMSGGITVLGSLVLSYNRIVIIFFALFVVFAVWLILNKTRLGLFVRAVTQNRRMADCVGV 419 WMSGG+TVLGSLVLSYNRIVI+FFALFVVFAVWLILNKTRLGLFVRAVTQNRRMADCVGV Sbjct: 371 WMSGGVTVLGSLVLSYNRIVIVFFALFVVFAVWLILNKTRLGLFVRAVTQNRRMADCVGV 430 Query: 420 STGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLGQGYIVDSFMVVVLGGVGQLAGTVIA 479 STGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLGQGYIVDSFMVVVLGGVGQLAGTVIA Sbjct: 431 STGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLGQGYIVDSFMVVVLGGVGQLAGTVIA 490 Query: 480 AFGLGEVNKFLEPVAGAVLAKIAILVFIIVFIQKRPQGLFALKGRSVE 527 AFGLGEVNKFLEP+AGAVLAKIAILVFIIVFIQKRPQGLFALKGRSVE Sbjct: 491 AFGLGEVNKFLEPMAGAVLAKIAILVFIIVFIQKRPQGLFALKGRSVE 538 >ref|YP_004753496.1| urea ABC transporter permease [Collimonas fungivorans Ter331] gb|AEK62673.1| Urea ABC transporter, permease protein [Collimonas fungivorans Ter331] Length = 540 Score = 877 bits (2265), Expect = 0.0, Method: Compositional matrix adjust. Identities = 441/527 (83%), Positives = 476/527 (90%) Query: 1 LLTGWLCTQAISAHAAIDPALLKPLAGDDPDARIAAVTQIAALANADAQKILNAINSDAL 60 LL LC AHA IDPALLKPLAGDDPDARI AV QIAALAN DA KILNA+N+DAL Sbjct: 14 LLIASLCLHITLAHAKIDPALLKPLAGDDPDARIVAVNQIAALANDDALKILNALNTDAL 73 Query: 61 YATPAGDVLIIEDSDAFNPATDKTGPAPDDAEGITVNNRLRGVVEGALSGLKLFSPDRAT 120 YA P G VLI+ D+ AFNPATD+T PDDAEGI+VNNRLRGVVEGALSGLKLFS +R Sbjct: 74 YARPDGTVLIVGDTQAFNPATDQTLATPDDAEGISVNNRLRGVVEGALSGLKLFSANRNQ 133 Query: 121 RLTAATELLKTADAAQTPLISKALAAEKDPQIQEVLKQVVATANLHAPDAATRKAAVKAL 180 R++AATEL+KTAD AQ PL+SKAL E DP+IQ VL+QV+ATANLH+ DAATRKAAV+ L Sbjct: 134 RMSAATELIKTADPAQIPLVSKALHQESDPEIQAVLQQVIATANLHSADAATRKAAVQTL 193 Query: 181 AETTNASLKPVLEQMLAKNPDGSYVEADEGVRIEAVRTVSALDRHLTITEFVGKLFYGVS 240 A +TNA+L+P L+ +L KNPDGSY+E D VRIEAVRT+ LDRHL +F+GK+FYG+S Sbjct: 194 AGSTNANLRPALQNLLNKNPDGSYIEPDPAVRIEAVRTLGVLDRHLATVDFIGKVFYGIS 253 Query: 241 LGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFPGAIDAYIVVAL 300 LGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQL+FR++FPGA+D Y++VAL Sbjct: 254 LGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLLFRQYFPGALDGYLLVAL 313 Query: 301 PAAFIVAAAVGIALERLVIRWLYGRPLETLLCTWGISLMLMQAVRSIFGAQNVEVANPSW 360 PAAFIV AAVGI LERLV+RWLYGRPLETLLCTWGISLMLMQ VRSIFGAQNVEVANPSW Sbjct: 314 PAAFIVTAAVGIVLERLVLRWLYGRPLETLLCTWGISLMLMQLVRSIFGAQNVEVANPSW 373 Query: 361 MSGGITVLGSLVLSYNRIVIIFFALFVVFAVWLILNKTRLGLFVRAVTQNRRMADCVGVS 420 MSGG+TVLGSLVLSYNRIVIIFFALFVV AVWLILNKTRLGLFVRAV QNRRMA CVGVS Sbjct: 374 MSGGVTVLGSLVLSYNRIVIIFFALFVVLAVWLILNKTRLGLFVRAVMQNRRMASCVGVS 433 Query: 421 TGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLGQGYIVDSFMVVVLGGVGQLAGTVIAA 480 TGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLGQGYIVDSFMVVVLGGVGQLAGTVIAA Sbjct: 434 TGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLGQGYIVDSFMVVVLGGVGQLAGTVIAA 493 Query: 481 FGLGEVNKFLEPVAGAVLAKIAILVFIIVFIQKRPQGLFALKGRSVE 527 FGLGEVNKFLEPVAGAVLAKIAILVFIIVFIQKRPQGLFALKGRSVE Sbjct: 494 FGLGEVNKFLEPVAGAVLAKIAILVFIIVFIQKRPQGLFALKGRSVE 540 >ref|ZP_06689559.1| branched-chain amino acid ABC superfamily ATP binding cassette transporter, permease [Achromobacter piechaudii ATCC 43553] gb|EFF73450.1| branched-chain amino acid ABC superfamily ATP binding cassette transporter, permease [Achromobacter piechaudii ATCC 43553] Length = 543 Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust. Identities = 332/519 (63%), Positives = 395/519 (76%), Gaps = 2/519 (0%) Query: 10 AISAHAAIDPALLKPLAGDDPDARIAAVTQIAALANADAQKILNAINSDALYATPAGDVL 69 A +A A +DPALL PLAGDD DA++ A+ + L A +L A+ +D LYAT G VL Sbjct: 26 AQAAAAGVDPALLAPLAGDDTDAKLQAIAALGQLPEPAAAAVLQALGNDQLYATADGRVL 85 Query: 70 I-IEDSDAFNPATDKTGPAPDDAEGITVNNRLRGVVEGALSGLKLFSPDRATRLTAATEL 128 I ++D+ A +P T P + +T+NNRLR +E AL+G +LFS RL AA L Sbjct: 86 IGVDDTHATDPVTGAAVDLPAGSGTVTINNRLRRAIEAALAGSRLFSDKPGERLDAARRL 145 Query: 129 LKTADAAQTPLISKALAAEKDPQIQEVLKQVVATANLHAPDAATRKAAVKALAETTNASL 188 +T D A+ P++ KALA+EK+ +++ L+ A L + D A R+ AV+ L +T NA+ Sbjct: 146 QQTGDPARLPMLEKALASEKNEAVRDALRIAQANLELKSSDPAKRRHAVELLGDTRNAAF 205 Query: 189 KPVLEQMLAKNPDGSYVEADEGVRIEAVRTVSALDRHLTITEFVGKLFYGVSLGSVLLLA 248 +P L L + DG+Y+E D VR A + +DRHL E+ G LFYGVSLGSVLLLA Sbjct: 206 RPTLAA-LTQQRDGAYLEPDASVREAAATALKQIDRHLATIEWAGNLFYGVSLGSVLLLA 264 Query: 249 ALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFPGAIDAYIVVALPAAFIVAA 308 ALGLAITFGLMG+INMAHGELLMIGAY TYV Q +FR + P +D Y+V ALP AF+V A Sbjct: 265 ALGLAITFGLMGVINMAHGELLMIGAYVTYVVQTLFRAWLPAWLDWYVVAALPLAFVVTA 324 Query: 309 AVGIALERLVIRWLYGRPLETLLCTWGISLMLMQAVRSIFGAQNVEVANPSWMSGGITVL 368 VG+ALER VIRWLYGRPLETLL TWGISLMLMQ VR++FGAQNVEV NPSWMSGGITVL Sbjct: 325 LVGMALERTVIRWLYGRPLETLLATWGISLMLMQGVRTLFGAQNVEVGNPSWMSGGITVL 384 Query: 369 GSLVLSYNRIVIIFFALFVVFAVWLILNKTRLGLFVRAVTQNRRMADCVGVSTGKIDMMT 428 G LVL+YNR+VII FA FVVF VW++LN TRLGLFVRA+TQNRRMADCVGV TG+IDM+ Sbjct: 385 GGLVLTYNRLVIIGFAFFVVFLVWVLLNHTRLGLFVRAITQNRRMADCVGVPTGRIDMLA 444 Query: 429 FGLGCGIAGLGGVALSQLGNVGPDLGQGYIVDSFMVVVLGGVGQLAGTVIAAFGLGEVNK 488 FGLG GIAGL GVALSQLGNVGPDLG+GYIVDSFMVVVLGGVGQLAGTVIAA GLG VNK Sbjct: 445 FGLGSGIAGLAGVALSQLGNVGPDLGRGYIVDSFMVVVLGGVGQLAGTVIAALGLGGVNK 504 Query: 489 FLEPVAGAVLAKIAILVFIIVFIQKRPQGLFALKGRSVE 527 FLEP AGAV+AKI ILV I++F+QKRPQGLFA +GRSVE Sbjct: 505 FLEPYAGAVMAKITILVLIVLFVQKRPQGLFAPRGRSVE 543 >gb|EGP47551.1| urea ABC transporter permease protein UrtB 2 [Achromobacter xylosoxidans AXX-A] Length = 543 Score = 621 bits (1602), Expect = e-176, Method: Compositional matrix adjust. Identities = 334/512 (65%), Positives = 386/512 (75%), Gaps = 2/512 (0%) Query: 17 IDPALLKPLAGDDPDARIAAVTQIAALANADAQKILNAINSDALYATPAGDVLIIE-DSD 75 +DPALL PLAGDD DAR+ A+ + A +L A+ +D LYA P G VLI + Sbjct: 33 VDPALLAPLAGDDTDARLQAIAALGQQPGPGAAAVLQALGNDQLYALPDGRVLIGDGKGQ 92 Query: 76 AFNPATDKTGPAPDDAEGITVNNRLRGVVEGALSGLKLFSPDRATRLTAATELLKTADAA 135 A +PAT T P P +A GI +NNRLR +E AL+G +LFS + RL AA L +T D A Sbjct: 93 ATDPATGTTLPMPAEASGIGINNRLRRAIEAALAGSRLFSDNPQERLAAARRLQQTGDPA 152 Query: 136 QTPLISKALAAEKDPQIQEVLKQVVATANLHAPDAATRKAAVKALAETTNASLKPVLEQM 195 + PL+ KALAAEKD ++ L+ A L + D A R AV L T NA+ +P L Sbjct: 153 RLPLLEKALAAEKDAAVRAALEIAQANLELKSADPAVRHHAVDLLGRTDNAAFRPTLAA- 211 Query: 196 LAKNPDGSYVEADEGVRIEAVRTVSALDRHLTITEFVGKLFYGVSLGSVLLLAALGLAIT 255 L + DG Y E D GVR A + +DRHL E+ G LFYG+SLGSVLLLAALGLAIT Sbjct: 212 LTQQQDGVYAEPDAGVREAAANALKRIDRHLATIEWAGNLFYGLSLGSVLLLAALGLAIT 271 Query: 256 FGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFPGAIDAYIVVALPAAFIVAAAVGIALE 315 FGLMG+INMAHGELLMIGAY TY+ Q FR + PG +D Y+ ALP AF+V A VG+ALE Sbjct: 272 FGLMGVINMAHGELLMIGAYVTYLVQTAFRAWLPGWLDWYVAAALPLAFVVTALVGMALE 331 Query: 316 RLVIRWLYGRPLETLLCTWGISLMLMQAVRSIFGAQNVEVANPSWMSGGITVLGSLVLSY 375 R VIRWLYGRPLETLL TWGISLMLMQ VR++FGAQNVEV NPSWMSGG+TVLG LVL+Y Sbjct: 332 RTVIRWLYGRPLETLLATWGISLMLMQGVRTLFGAQNVEVGNPSWMSGGVTVLGGLVLTY 391 Query: 376 NRIVIIFFALFVVFAVWLILNKTRLGLFVRAVTQNRRMADCVGVSTGKIDMMTFGLGCGI 435 NR+VII FALFVVF VW +LN TRLGLFVRA+TQNRRMADCVGV TG++DM+ FGLG GI Sbjct: 392 NRLVIIGFALFVVFLVWALLNHTRLGLFVRAITQNRRMADCVGVPTGRVDMLAFGLGSGI 451 Query: 436 AGLGGVALSQLGNVGPDLGQGYIVDSFMVVVLGGVGQLAGTVIAAFGLGEVNKFLEPVAG 495 AGL GVALSQLGNVGPDLG+GYIVDSFMVVVLGGVGQLAGTVIAA GLG VNKFLEP AG Sbjct: 452 AGLAGVALSQLGNVGPDLGRGYIVDSFMVVVLGGVGQLAGTVIAALGLGGVNKFLEPYAG 511 Query: 496 AVLAKIAILVFIIVFIQKRPQGLFALKGRSVE 527 AV+AKI ILV I++F+QKRPQGLFA +GRSVE Sbjct: 512 AVMAKITILVLIVLFVQKRPQGLFAPRGRSVE 543