BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0013.p (374 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001353498.1| ABC-type branched-chain amino acid transport... 646 0.0 ref|YP_003778089.1| urea transport system, permease component pr... 642 0.0 ref|YP_004753497.1| urea ABC transporter permease [Collimonas fu... 571 e-161 gb|EGP47552.1| urea ABC transporter permease protein UrtC 2 [Ach... 528 e-148 ref|YP_001628900.1| branched chain amino acid ABC transporter pe... 523 e-146 >ref|YP_001353498.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] gb|ABR89856.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 365 Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/358 (91%), Positives = 341/358 (95%) Query: 8 LKPSLFSRPAWIAIVVFTVILGLLPILNLILPAGHPLSISSYTIALIGKFMCYAMAALAL 67 LKPSLFSRPAWI IV V+L LLPI+NL PA H L ISSYTIAL+GKFMCYAMAALAL Sbjct: 5 LKPSLFSRPAWIGIVFCAVVLALLPIMNLCFPADHALHISSYTIALVGKFMCYAMAALAL 64 Query: 68 DLVWGYTGILSLGHGVFFALGGYAHGMYLMRAIGHDGVYQSDLPDFMVFLNWKAYPWYWW 127 DLVWGYTGILSLGHGVFFALGGYAHGMYLMR+IG DGVYQS+LPDFMVFLNWK YPWYWW Sbjct: 65 DLVWGYTGILSLGHGVFFALGGYAHGMYLMRSIGRDGVYQSNLPDFMVFLNWKEYPWYWW 124 Query: 128 MTEHFWFAMLLVVLVPGVLAFVFGYFAFRSRIKGVYFSIITQAMTFAFMLLFFRNDTGFG 187 MTEHFWFAMLLVVLVPG+LAF+FGYFAFRSRIKGVYFSIITQAMTFAFMLLFFRNDTGFG Sbjct: 125 MTEHFWFAMLLVVLVPGLLAFIFGYFAFRSRIKGVYFSIITQAMTFAFMLLFFRNDTGFG 184 Query: 188 GNNGFTDFKRILGYTITAPSTKAVLYLVTLAFLLGSLLLCRAIVTSKLGRVLQGVRDSES 247 GNNGFTDFKRILG+TIT PSTKAVLYLVTLAFLL +L +CRAIVTSKLGRVLQGVRDSES Sbjct: 185 GNNGFTDFKRILGFTITDPSTKAVLYLVTLAFLLAALFVCRAIVTSKLGRVLQGVRDSES 244 Query: 248 RLMFIGYNPLWFKLFVWTLSAVLCGIAGALYVPQVGIINPSEMSPANSIEMVIWAAVGGR 307 RLMFIGYNPLWFKLFVWTLSAV+CGIAGALYVPQVGIINPSEMSPANSIEMVIWAAVGGR Sbjct: 245 RLMFIGYNPLWFKLFVWTLSAVVCGIAGALYVPQVGIINPSEMSPANSIEMVIWAAVGGR 304 Query: 308 GSLLGPIIGAFTVNGLKSWFTAAFPDLWLYALGLIFILVTLFLPQGILGLIKKLKKQD 365 GSLLGPIIGAFTVNGLKSWFTAAFPDLWLYALGLIFI VTLF+PQGILGL+KK KKQ+ Sbjct: 305 GSLLGPIIGAFTVNGLKSWFTAAFPDLWLYALGLIFIFVTLFMPQGILGLVKKFKKQE 362 >ref|YP_003778089.1| urea transport system, permease component protein [Herbaspirillum seropedicae SmR1] gb|ADJ66181.1| urea transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 376 Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/378 (86%), Positives = 351/378 (92%), Gaps = 6/378 (1%) Query: 1 MSTLNLPLKPSLFSRPAWIAIVVFTVILGLLPILNLILPAGHPLSISSYTIALIGKFMCY 60 MST+ ++PSLF+RPAW IV+ T++L LLP+ NL+ PAG L +SSYT+AL+GKFMCY Sbjct: 1 MSTM--IMRPSLFNRPAWTGIVICTIVLALLPVCNLLFPAGSALHVSSYTVALVGKFMCY 58 Query: 61 AMAALALDLVWGYTGILSLGHGVFFALGGYAHGMYLMRAIGHDGVYQSDLPDFMVFLNWK 120 AMAALALDLVWGYTGILSLGHGVFFALGGYAHGMYLMRAIG DGVYQSDLPDFMVFLNWK Sbjct: 59 AMAALALDLVWGYTGILSLGHGVFFALGGYAHGMYLMRAIGRDGVYQSDLPDFMVFLNWK 118 Query: 121 AYPWYWWMTEHFWFAMLLVVLVPGVLAFVFGYFAFRSRIKGVYFSIITQAMTFAFMLLFF 180 AYPWYWWMT+HFWFAMLLVVLVPG+LAFVFGYFAFRSRIKGVYFSIITQAMTFAFMLLFF Sbjct: 119 AYPWYWWMTDHFWFAMLLVVLVPGLLAFVFGYFAFRSRIKGVYFSIITQAMTFAFMLLFF 178 Query: 181 RNDTGFGGNNGFTDFKRILGYTITAPSTKAVLYLVTLAFLLGSLLLCRAIVTSKLGRVLQ 240 RNDTGFGGNNGFTDFKRILG+TITAP+TKAVLYLVTL L G+L+LCR IVTSKLGRVLQ Sbjct: 179 RNDTGFGGNNGFTDFKRILGFTITAPATKAVLYLVTLGLLFGALVLCRMIVTSKLGRVLQ 238 Query: 241 GVRDSESRLMFIGYNPLWFKLFVWTLSAVLCGIAGALYVPQVGIINPSEMSPANSIEMVI 300 GVRDSESRLMFIGYNPLWFKLFVWTLSAV+CGIAGALYVPQVGIINPSEMSPANSIEMVI Sbjct: 239 GVRDSESRLMFIGYNPLWFKLFVWTLSAVICGIAGALYVPQVGIINPSEMSPANSIEMVI 298 Query: 301 WAAVGGRGSLLGPIIGAFTVNGLKSWFTAAFPDLWLYALGLIFILVTLFLPQGILGLIKK 360 WAAVGGRG+L+GPIIGAFTVNGLKSWFTAAFPDLWLYALGLIFILVTLFLPQGILGL++K Sbjct: 299 WAAVGGRGTLIGPIIGAFTVNGLKSWFTAAFPDLWLYALGLIFILVTLFLPQGILGLVQK 358 Query: 361 LKKQD----PQDRIKEAA 374 KK+D KEAA Sbjct: 359 FKKRDAVAAEGSASKEAA 376 >ref|YP_004753497.1| urea ABC transporter permease [Collimonas fungivorans Ter331] gb|AEK62674.1| Urea ABC transporter, permease protein [Collimonas fungivorans Ter331] Length = 381 Score = 571 bits (1472), Expect = e-161, Method: Compositional matrix adjust. Identities = 320/371 (86%), Positives = 339/371 (91%), Gaps = 9/371 (2%) Query: 1 MSTLNLPL---------KPSLFSRPAWIAIVVFTVILGLLPILNLILPAGHPLSISSYTI 51 MST +P K LFSRPAW I+ +VIL LLP+LNL+ PAGH L ISSYT+ Sbjct: 1 MSTTTIPAPTLQQIAAAKTPLFSRPAWSGIIFCSVILALLPVLNLLFPAGHVLHISSYTV 60 Query: 52 ALIGKFMCYAMAALALDLVWGYTGILSLGHGVFFALGGYAHGMYLMRAIGHDGVYQSDLP 111 AL+GKFMCYAMAALALDLVWGYTGILSLGHGVFFALGGYAHGMYLMRAIG DGVYQS+LP Sbjct: 61 ALVGKFMCYAMAALALDLVWGYTGILSLGHGVFFALGGYAHGMYLMRAIGRDGVYQSNLP 120 Query: 112 DFMVFLNWKAYPWYWWMTEHFWFAMLLVVLVPGVLAFVFGYFAFRSRIKGVYFSIITQAM 171 DFMVFL+WK YPW+W +T+HFW+ M LVVLVPGVLAFVFGYFAFRSRIKGVYFSIITQAM Sbjct: 121 DFMVFLDWKTYPWFWSLTDHFWYCMALVVLVPGVLAFVFGYFAFRSRIKGVYFSIITQAM 180 Query: 172 TFAFMLLFFRNDTGFGGNNGFTDFKRILGYTITAPSTKAVLYLVTLAFLLGSLLLCRAIV 231 TFAFMLLFFRN+TGFGGNNGFTDFKRILGY+ITAPSTKAVLYL+TLAFLLG+LLLCR IV Sbjct: 181 TFAFMLLFFRNNTGFGGNNGFTDFKRILGYSITAPSTKAVLYLITLAFLLGALLLCRWIV 240 Query: 232 TSKLGRVLQGVRDSESRLMFIGYNPLWFKLFVWTLSAVLCGIAGALYVPQVGIINPSEMS 291 TSKLGRVLQ VRDSESRLMFIGYNPLWFKLFVWTLSAVLCGIAGALYVPQVGIINPSEMS Sbjct: 241 TSKLGRVLQAVRDSESRLMFIGYNPLWFKLFVWTLSAVLCGIAGALYVPQVGIINPSEMS 300 Query: 292 PANSIEMVIWAAVGGRGSLLGPIIGAFTVNGLKSWFTAAFPDLWLYALGLIFILVTLFLP 351 PANSIEMVIWAAVGGRGSLLGPIIGAF+VNGLKSWFT AFPDLWLYALGLIFILVTLF+P Sbjct: 301 PANSIEMVIWAAVGGRGSLLGPIIGAFSVNGLKSWFTGAFPDLWLYALGLIFILVTLFMP 360 Query: 352 QGILGLIKKLK 362 QGILGL KLK Sbjct: 361 QGILGLADKLK 371 >gb|EGP47552.1| urea ABC transporter permease protein UrtC 2 [Achromobacter xylosoxidans AXX-A] Length = 375 Score = 528 bits (1359), Expect = e-148, Method: Compositional matrix adjust. Identities = 277/369 (75%), Positives = 315/369 (85%) Query: 1 MSTLNLPLKPSLFSRPAWIAIVVFTVILGLLPILNLILPAGHPLSISSYTIALIGKFMCY 60 ++ LNL + LF+ AW A+ ++L L+P+LNL PAGHPL IS+Y +AL+GKFMCY Sbjct: 6 LTDLNLLARRPLFNGRAWAALGAGVLLLALVPLLNLAFPAGHPLHISAYAVALLGKFMCY 65 Query: 61 AMAALALDLVWGYTGILSLGHGVFFALGGYAHGMYLMRAIGHDGVYQSDLPDFMVFLNWK 120 A+AALALDLVWGY GILSLGHG+FFALGGYAHGMYLMRAIG DGVYQS LPDFMVFL+WK Sbjct: 66 ALAALALDLVWGYAGILSLGHGLFFALGGYAHGMYLMRAIGQDGVYQSRLPDFMVFLDWK 125 Query: 121 AYPWYWWMTEHFWFAMLLVVLVPGVLAFVFGYFAFRSRIKGVYFSIITQAMTFAFMLLFF 180 YPWYW T+HF +AMLLVVLVPG LAFVFGYFAFRSRIKGVYFSIITQA+TFA MLLFF Sbjct: 126 DYPWYWAFTDHFAYAMLLVVLVPGALAFVFGYFAFRSRIKGVYFSIITQALTFAAMLLFF 185 Query: 181 RNDTGFGGNNGFTDFKRILGYTITAPSTKAVLYLVTLAFLLGSLLLCRAIVTSKLGRVLQ 240 RNDTGFGGNNGFTDFKRILG+ ITAP T+A LY +TLA L+G+L+L RA+ SKLGRVL Sbjct: 186 RNDTGFGGNNGFTDFKRILGFDITAPGTRAALYWITLAALVGALVLARAVTQSKLGRVLT 245 Query: 241 GVRDSESRLMFIGYNPLWFKLFVWTLSAVLCGIAGALYVPQVGIINPSEMSPANSIEMVI 300 VRD+ESRL FIGY+PL FKLFVWTLSAVLCGIAGALYVPQVGIINPSEMS NSIEMVI Sbjct: 246 AVRDAESRLRFIGYDPLGFKLFVWTLSAVLCGIAGALYVPQVGIINPSEMSTENSIEMVI 305 Query: 301 WAAVGGRGSLLGPIIGAFTVNGLKSWFTAAFPDLWLYALGLIFILVTLFLPQGILGLIKK 360 W A GGRG+L+GPIIGA VNGLK+WFT+ P+ WLYALGLIF+LVTLFLP GI+GL ++ Sbjct: 306 WVATGGRGTLIGPIIGAGAVNGLKTWFTSVLPEFWLYALGLIFVLVTLFLPTGIVGLARR 365 Query: 361 LKKQDPQDR 369 L + + R Sbjct: 366 LAARYQERR 374 >ref|YP_001628900.1| branched chain amino acid ABC transporter permease [Bordetella petrii DSM 12804] emb|CAP40629.1| Branched-chain amino acid transport system, permease component [Bordetella petrii] Length = 373 Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust. Identities = 273/366 (74%), Positives = 310/366 (84%), Gaps = 5/366 (1%) Query: 8 LKPSLFSRP-----AWIAIVVFTVILGLLPILNLILPAGHPLSISSYTIALIGKFMCYAM 62 L P+L RP AW + + T +L LP LNL+ P GH L +S+Y +AL+GKFMCYA+ Sbjct: 6 LNPALARRPLFSARAWAGLAIATALLAALPCLNLVFPPGHALHVSAYAVALLGKFMCYAL 65 Query: 63 AALALDLVWGYTGILSLGHGVFFALGGYAHGMYLMRAIGHDGVYQSDLPDFMVFLNWKAY 122 AALALDLVWGY GILSLGHG+FFALGGYAHGMYLMRAIG DGVYQSD+PDFMVFLNWKAY Sbjct: 66 AALALDLVWGYAGILSLGHGLFFALGGYAHGMYLMRAIGRDGVYQSDVPDFMVFLNWKAY 125 Query: 123 PWYWWMTEHFWFAMLLVVLVPGVLAFVFGYFAFRSRIKGVYFSIITQAMTFAFMLLFFRN 182 PWYW T+HFW+AMLLVVLVPG LAF+FGYFAFRSRIKGVYFSIITQA+TFA MLLFFRN Sbjct: 126 PWYWAFTDHFWYAMLLVVLVPGGLAFLFGYFAFRSRIKGVYFSIITQALTFAAMLLFFRN 185 Query: 183 DTGFGGNNGFTDFKRILGYTITAPSTKAVLYLVTLAFLLGSLLLCRAIVTSKLGRVLQGV 242 DTGFGGNNGFTDFKRILG+ ITAP+T+A LY VTLA L G+L+L RA+ SKLGRVL V Sbjct: 186 DTGFGGNNGFTDFKRILGFDITAPATRAGLYWVTLAVLFGALVLARAVTQSKLGRVLTAV 245 Query: 243 RDSESRLMFIGYNPLWFKLFVWTLSAVLCGIAGALYVPQVGIINPSEMSPANSIEMVIWA 302 RD+ESRL FIGY PL FKLFVWTLSAV+CG+AGALYVPQVGIINP EMS NSIEMVIW Sbjct: 246 RDAESRLRFIGYEPLGFKLFVWTLSAVMCGVAGALYVPQVGIINPGEMSTENSIEMVIWV 305 Query: 303 AVGGRGSLLGPIIGAFTVNGLKSWFTAAFPDLWLYALGLIFILVTLFLPQGILGLIKKLK 362 A GGRG+L+GPIIGA VNGLK+WFT+ FP+ WLYALGLIF+LVTL LPQGI+GL+++ Sbjct: 306 ATGGRGTLIGPIIGAGAVNGLKTWFTSVFPEFWLYALGLIFVLVTLLLPQGIVGLVRRWM 365 Query: 363 KQDPQD 368 + + Sbjct: 366 ARREEH 371