BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0006.p         (107 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001353503.1| urease beta subunit [Janthinobacterium sp. M...   201   3e-50
ref|YP_003778094.1| urease subunit beta [Herbaspirillum seropedi...   187   6e-46
ref|YP_004753502.1| urease subunit beta [Collimonas fungivorans ...   177   6e-43
ref|ZP_08276126.1| Urease beta subunit [Oxalobacteraceae bacteri...   170   5e-41
ref|YP_295217.1| urease subunit beta [Ralstonia eutropha JMP134]...   164   3e-39

>ref|YP_001353503.1| urease beta subunit [Janthinobacterium sp. Marseille]
 sp|A6SZ06.1|URE2_JANMA RecName: Full=Urease subunit beta; AltName: Full=Urea
           amidohydrolase subunit beta
 gb|ABR89059.1| urease beta subunit [Janthinobacterium sp. Marseille]
          Length = 107

 Score =  201 bits (512), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 98/107 (91%), Positives = 100/107 (93%)

Query: 1   MIPGEMLVEPGDIELNVGRRTASVTVANSGDRPIQVGSHFHFFETNPALKFDRQIGYGMR 60
           MIPGEMLVEPGDIELNVGR TA+V VANSGDRPIQVGSHFHF+ETNPALKFDR IGYGMR
Sbjct: 1   MIPGEMLVEPGDIELNVGRATATVKVANSGDRPIQVGSHFHFYETNPALKFDRAIGYGMR 60

Query: 61  LNIAAGTAVRFEPGQERTVELVALAGDRKVYGFNAKVMGALDKKGNK 107
           LNI AGTAVRFEPGQERTVELVALAGDRKVYGFN KVMGALDKK  K
Sbjct: 61  LNITAGTAVRFEPGQERTVELVALAGDRKVYGFNGKVMGALDKKEGK 107


>ref|YP_003778094.1| urease subunit beta [Herbaspirillum seropedicae SmR1]
 gb|ADJ66186.1| urease (beta subunit) protein [Herbaspirillum seropedicae SmR1]
          Length = 114

 Score =  187 bits (474), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 92/112 (82%), Positives = 98/112 (87%), Gaps = 6/112 (5%)

Query: 1   MIPGEMLVEPGDIELNVGRRTASVTVANSGDRPIQVGSHFHFFETNPALKFDRQIGYGMR 60
           MIPGEMLVEPGDIELN GR T +VTVANSGDRPIQVGSHFHF+ETNPAL+F+R+  YGMR
Sbjct: 1   MIPGEMLVEPGDIELNTGRPTVTVTVANSGDRPIQVGSHFHFYETNPALRFEREAAYGMR 60

Query: 61  LNIAAGTAVRFEPGQERTVELVALAGDRKVYGFNAKVMGAL------DKKGN 106
           LNIAAGTAVRFEPGQERTVELVALAGDR+VYGFNA VMG L      DKKG 
Sbjct: 61  LNIAAGTAVRFEPGQERTVELVALAGDRRVYGFNALVMGKLKAQHGNDKKGQ 112


>ref|YP_004753502.1| urease subunit beta [Collimonas fungivorans Ter331]
 gb|AEK62679.1| Urease beta subunit [Collimonas fungivorans Ter331]
          Length = 107

 Score =  177 bits (448), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 84/104 (80%), Positives = 92/104 (88%)

Query: 1   MIPGEMLVEPGDIELNVGRRTASVTVANSGDRPIQVGSHFHFFETNPALKFDRQIGYGMR 60
           MIPGEM ++ GDIELNVGRR  SVTVANSGDRPIQ+GSHFHF+E NPAL F+R+  YGMR
Sbjct: 1   MIPGEMQIQSGDIELNVGRRCNSVTVANSGDRPIQIGSHFHFYEVNPALLFEREDAYGMR 60

Query: 61  LNIAAGTAVRFEPGQERTVELVALAGDRKVYGFNAKVMGALDKK 104
           LNIAAGTAVRFEPGQ+RTVELV LAGDR VYGFN KVMGAL K+
Sbjct: 61  LNIAAGTAVRFEPGQKRTVELVELAGDRIVYGFNGKVMGALTKR 104


>ref|ZP_08276126.1| Urease beta subunit [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF30402.1| Urease beta subunit [Oxalobacteraceae bacterium IMCC9480]
          Length = 97

 Score =  170 bits (431), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 81/96 (84%), Positives = 87/96 (90%)

Query: 6   MLVEPGDIELNVGRRTASVTVANSGDRPIQVGSHFHFFETNPALKFDRQIGYGMRLNIAA 65
           ML+E G+I LNVGRRTA+V +ANSGDRPIQVGSHFHFFETNPAL+FDR   YGMRLNIAA
Sbjct: 1   MLIEAGEIALNVGRRTATVVIANSGDRPIQVGSHFHFFETNPALQFDRDAAYGMRLNIAA 60

Query: 66  GTAVRFEPGQERTVELVALAGDRKVYGFNAKVMGAL 101
           GTAVRFEPGQ+RTVELV LAG R VYGFNAKVMGAL
Sbjct: 61  GTAVRFEPGQQRTVELVDLAGARAVYGFNAKVMGAL 96


>ref|YP_295217.1| urease subunit beta [Ralstonia eutropha JMP134]
 sp|Q473R0.1|URE2_RALEJ RecName: Full=Urease subunit beta; AltName: Full=Urea
           amidohydrolase subunit beta
 gb|AAZ60373.1| Urease, beta subunit [Ralstonia eutropha JMP134]
          Length = 101

 Score =  164 bits (416), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 79/101 (78%), Positives = 86/101 (85%)

Query: 1   MIPGEMLVEPGDIELNVGRRTASVTVANSGDRPIQVGSHFHFFETNPALKFDRQIGYGMR 60
           MIPGE++   G+IELN GR TASVTVAN+GDRPIQVGSHFHF+ETN AL FDR+   G R
Sbjct: 1   MIPGELMAADGEIELNAGRHTASVTVANTGDRPIQVGSHFHFYETNAALSFDREATRGFR 60

Query: 61  LNIAAGTAVRFEPGQERTVELVALAGDRKVYGFNAKVMGAL 101
           LNIAAGTAVRFEPGQ RTVELVAL GDR VYGFN K+MGAL
Sbjct: 61  LNIAAGTAVRFEPGQTRTVELVALDGDRIVYGFNGKIMGAL 101