BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0029.p (232 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774919.1| amino acid ABC transporter permease [Herbasp... 412 e-113 ref|YP_004681937.1| PAAT family ABC transporter permease [Cupria... 255 4e-66 ref|YP_003777258.1| amino acid ABC transporter permease [Herbasp... 247 9e-64 ref|YP_002540511.1| amino acid ABC transporter [Agrobacterium ra... 242 4e-62 ref|YP_001525532.1| amino acid ABC transporter permease [Azorhiz... 240 1e-61 >ref|YP_003774919.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ63011.1| ABC-type amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 231 Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust. Identities = 214/229 (93%), Positives = 223/229 (97%) Query: 1 MSYDFQFAFIFQHMDQLLWGALLTIRLSALSMICGLAVGIFGAIVSIHGSAPARFAVTSY 60 M YDFQFAFIFQH+DQLL GALLTIRLSALSMICGLAVGIFGAI+SIHGS PAR AVTSY Sbjct: 1 MQYDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGSKPARLAVTSY 60 Query: 61 VELIRSTPFLVQLFIIFFGLPAAGVQVDANVAALVAMTVNLGAYSTEIVRAGMMAVHPSQ 120 VELIRSTPFLVQLFIIFFGLP+ GVQVDAN+AALVAMTVNLGAYSTEIVRAGMMA+HPSQ Sbjct: 61 VELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPSQ 120 Query: 121 IEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSVVSAISAEELTASANLL 180 IEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASS+VSAISAEELTA+ANLL Sbjct: 121 IEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANLL 180 Query: 181 DAETFRSFEIYLIVMGLYILLALLFRLSFWLIGLVVFKRRRRLGVARPR 229 DAETFRSFEIYL+VM LYILLALLFRL+FWLIGLVVFKRRRRLGVARPR Sbjct: 181 DAETFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVFKRRRRLGVARPR 229 >ref|YP_004681937.1| PAAT family ABC transporter permease [Cupriavidus necator N-1] gb|AEI80705.1| ABC transport system permease protein [Cupriavidus necator N-1] Length = 252 Score = 255 bits (651), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 133/217 (61%), Positives = 165/217 (76%) Query: 1 MSYDFQFAFIFQHMDQLLWGALLTIRLSALSMICGLAVGIFGAIVSIHGSAPARFAVTSY 60 M+Y F++ + +D+ GA +T+ LS S++ G AVG GAI + GS + A +Y Sbjct: 1 MNYQFEWTPVLSQLDRFAEGAAMTLALSFGSILLGTAVGTAGAIAAAFGSPWLQRATRAY 60 Query: 61 VELIRSTPFLVQLFIIFFGLPAAGVQVDANVAALVAMTVNLGAYSTEIVRAGMMAVHPSQ 120 VE IR+TPFL+QLFIIFFGLP G+Q+DA AA++AMTVNLGAYSTEI+RAG+ AVH SQ Sbjct: 61 VEAIRNTPFLIQLFIIFFGLPTVGLQIDAVTAAVIAMTVNLGAYSTEIIRAGLQAVHRSQ 120 Query: 121 IEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSVVSAISAEELTASANLL 180 +EAA AL MTRWQ+IRHV L PA EKVYPAL SQFTLMML SSVVS IS EELTA A+ + Sbjct: 121 LEAAAALGMTRWQLIRHVALVPAFEKVYPALTSQFTLMMLTSSVVSTISVEELTAVASQV 180 Query: 181 DAETFRSFEIYLIVMGLYILLALLFRLSFWLIGLVVF 217 D++TFR+FE Y++VM +YI LALL R F LIG +VF Sbjct: 181 DSQTFRTFESYILVMFIYIGLALLLRAMFGLIGNLVF 217 >ref|YP_003777258.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ65350.1| ABC-type amino acid transport system, permease protein [Herbaspirillum seropedicae SmR1] Length = 227 Score = 247 bits (631), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 123/224 (54%), Positives = 169/224 (75%) Query: 1 MSYDFQFAFIFQHMDQLLWGALLTIRLSALSMICGLAVGIFGAIVSIHGSAPARFAVTSY 60 M+Y F F +F + D+LL GA LTI+LSALS++ G AVG AI A R V +Y Sbjct: 1 MNYTFDFMSVFANWDRLLMGAWLTIQLSALSIVLGFAVGTLCAIAGKSRLALVRGLVLAY 60 Query: 61 VELIRSTPFLVQLFIIFFGLPAAGVQVDANVAALVAMTVNLGAYSTEIVRAGMMAVHPSQ 120 VE+IR+TP LVQ+F++FFGL + G ++ A AA++A+TVN+GAY+TEI+RAG+ ++HP Q Sbjct: 61 VEIIRNTPLLVQVFLVFFGLASIGWKLSAETAAVIALTVNVGAYTTEIMRAGINSIHPGQ 120 Query: 121 IEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSVVSAISAEELTASANLL 180 IEAA+ L M+R+ V HVVL PA+E+VYP+L SQF L+MLASS+ S ISAEELTA+ANL+ Sbjct: 121 IEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 Query: 181 DAETFRSFEIYLIVMGLYILLALLFRLSFWLIGLVVFKRRRRLG 224 +ETFRSFE+Y ++ Y++L+ LFR +FW I + F R+R+LG Sbjct: 181 QSETFRSFEVYAVIAVAYLVLSFLFRGAFWAISQIAFVRKRKLG 224 >ref|YP_002540511.1| amino acid ABC transporter [Agrobacterium radiobacter K84] gb|ACM28916.1| amino acid ABC transporter [Agrobacterium radiobacter K84] Length = 234 Score = 242 bits (617), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 128/234 (54%), Positives = 169/234 (72%), Gaps = 4/234 (1%) Query: 1 MSYDFQFAFIFQHMDQLLWGALLTIRLSALSMICGLAVGI-FGAIVSIHGSAPARFAVTS 59 MSY FQF+ + Q+ + L G LTIRLS LS+I G A GI ++ S+ G RF V + Sbjct: 1 MSYTFQFSALAQYQGEFLSGLWLTIRLSVLSIILGSAFGIVLASLRSVRGKW-VRFLVDA 59 Query: 60 YVELIRSTPFLVQLFIIFFGLPAAGVQVDANVAALVAMTVNLGAYSTEIVRAGMMAVHPS 119 YVE+IR+TPFLVQLFI++FGLP G++V A+ AAL+ MT+NL AYSTEI+RAG+ AVH S Sbjct: 60 YVEVIRNTPFLVQLFIVYFGLPGIGLRVGADTAALIGMTINLAAYSTEIIRAGIEAVHKS 119 Query: 120 QIEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSVVSAISAEELTASANL 179 QIEA +AL TR+Q+ RHV++ PA+ KVYPAL SQF LMMLASS+ SAIS EL ASA Sbjct: 120 QIEAGEALGFTRFQIYRHVIIVPAVAKVYPALCSQFVLMMLASSICSAISTHELAASAAF 179 Query: 180 LDAETFRSFEIYLIVMGLYILLALLFRLSFWLIGLVVFKRR--RRLGVARPRGN 231 ++++T+RSFE+Y++V +Y+ LAL+ R L+G+ +F RR RR A P Sbjct: 180 VESQTYRSFEVYIVVTLMYLALALVLRAGLALVGMWLFGRRVARRTITALPEAQ 233 >ref|YP_001525532.1| amino acid ABC transporter permease [Azorhizobium caulinodans ORS 571] dbj|BAF88614.1| amino acid ABC transporter permease protein [Azorhizobium caulinodans ORS 571] Length = 234 Score = 240 bits (613), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 121/227 (53%), Positives = 171/227 (75%), Gaps = 2/227 (0%) Query: 1 MSYDFQFAFIFQHMDQLLWGALLTIRLSALSMICGLAVGI-FGAIVSIHGSAPARFAVTS 59 ++Y FQF I + D+LL G LLTI+LS S++ GLA+GI ++ +++G R + Sbjct: 3 VNYQFQFGVIANYRDELLSGLLLTIQLSVSSIVLGLALGIMLASVRAMYGGLIGRI-IKL 61 Query: 60 YVELIRSTPFLVQLFIIFFGLPAAGVQVDANVAALVAMTVNLGAYSTEIVRAGMMAVHPS 119 YVE++R+TPFLVQLFIIFFGLP GV+VDA AAL+ MT+NLGAY+TEI+RAG+ AVH S Sbjct: 62 YVEVVRNTPFLVQLFIIFFGLPVLGVRVDATAAALIGMTINLGAYTTEIIRAGIDAVHRS 121 Query: 120 QIEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSVVSAISAEELTASANL 179 Q+EA Q+L MT +Q+ RH+++ PA+ KVYPAL SQF LM LASSV SAISAEEL++ Sbjct: 122 QVEAGQSLGMTTYQIYRHIIIPPAIAKVYPALCSQFILMTLASSVCSAISAEELSSVTAQ 181 Query: 180 LDAETFRSFEIYLIVMGLYILLALLFRLSFWLIGLVVFKRRRRLGVA 226 ++++++RSFE+Y+I +Y+ L+++ R F L+G +FKRR +L +A Sbjct: 182 IESQSYRSFEVYVIATLIYLALSMVLRGIFALVGWYLFKRRPKLKLA 228