BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0028.p (188 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774918.1| amino-acid ABC transporter periplasmic prote... 319 1e-85 ref|YP_841319.1| ABC transporter periplasmic protein [Ralstonia ... 265 2e-69 ref|YP_004681936.1| LacI family transcriptional regulator [Cupri... 264 6e-69 ref|YP_550768.1| extracellular solute-binding protein [Polaromon... 228 2e-58 ref|NP_354406.2| ABC transporter, substrate binding protein (ami... 218 3e-55 >ref|YP_003774918.1| amino-acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ63010.1| ABC-type amino-acid transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 267 Score = 319 bits (818), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 168/188 (89%), Positives = 178/188 (94%), Gaps = 1/188 (0%) Query: 1 VEIVPLVPPARIPALESGKVDFLAATLAPTPERAKSVMFTIPYSGFELSIVGPVASKFKN 60 VEIVPLVPPARIPALESGKVD LAATLAPTPERAKSV+FTIPYSGFELSIV PV S +K Sbjct: 81 VEIVPLVPPARIPALESGKVDMLAATLAPTPERAKSVLFTIPYSGFELSIVAPVGSNYKK 140 Query: 61 LNDLVKKKVGVSRGSTNDTALTRLAPAGTVLVRFEDDSTVTQALLSGQVDAISIPNTMAT 120 L+DLVKKKVGVSRGSTNDTALTRLAP GTVLVRFEDDSTVTQALLS QVDAISIPNTMA Sbjct: 141 LDDLVKKKVGVSRGSTNDTALTRLAPPGTVLVRFEDDSTVTQALLSNQVDAISIPNTMAN 200 Query: 121 EIVKTRGAGKIDIKFPYSVQPNSMTVRKGAFDLQQWLNNFIYYVKLNGELDAISRKWSGS 180 EIVK+RG GKI++KFPYSVQPNSMTVRKG+++LQQWLNNFIYYVKLNGELDAISRKW+G Sbjct: 201 EIVKSRGQGKIEVKFPYSVQPNSMTVRKGSYELQQWLNNFIYYVKLNGELDAISRKWAG- 259 Query: 181 PLPNLPVF 188 PLPNLPVF Sbjct: 260 PLPNLPVF 267 >ref|YP_841319.1| ABC transporter periplasmic protein [Ralstonia eutropha H16] emb|CAJ96589.1| ABC-type transporter, periplasmic component: PAAT family [Ralstonia eutropha H16] Length = 267 Score = 265 bits (677), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 125/188 (66%), Positives = 152/188 (80%) Query: 1 VEIVPLVPPARIPALESGKVDFLAATLAPTPERAKSVMFTIPYSGFELSIVGPVASKFKN 60 V+IVPL P+RIPALE+GKVDFL ATLAPTPERA+++MF+ PYS FEL+I PVA+K+ Sbjct: 80 VDIVPLTSPSRIPALEAGKVDFLVATLAPTPERARAIMFSAPYSAFELTIFAPVAAKYAR 139 Query: 61 LNDLVKKKVGVSRGSTNDTALTRLAPAGTVLVRFEDDSTVTQALLSGQVDAISIPNTMAT 120 L +L KKKVGV+RG+T DTALTRLA G +VRFEDD+T QAL+S QV+AI++PNT Sbjct: 140 LTELGKKKVGVTRGTTQDTALTRLAVPGMNIVRFEDDATCAQALISNQVEAIALPNTTGN 199 Query: 121 EIVKTRGAGKIDIKFPYSVQPNSMTVRKGAFDLQQWLNNFIYYVKLNGELDAISRKWSGS 180 EI+K RGAGK D KF +SVQPNSM VR+ AF+L+QWLN I YVKLNGELDAI++KW+G Sbjct: 200 EIMKARGAGKFDAKFAFSVQPNSMAVRRDAFELRQWLNTTISYVKLNGELDAIAQKWTGK 259 Query: 181 PLPNLPVF 188 LP L F Sbjct: 260 ALPALQAF 267 >ref|YP_004681936.1| LacI family transcriptional regulator [Cupriavidus necator N-1] gb|AEI80704.1| ABC transport system permease protein PAAT family [Cupriavidus necator N-1] Length = 267 Score = 264 bits (674), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 124/188 (65%), Positives = 152/188 (80%) Query: 1 VEIVPLVPPARIPALESGKVDFLAATLAPTPERAKSVMFTIPYSGFELSIVGPVASKFKN 60 V+IVPL P+RIPALE+GKVDFL ATLAPTPERA+++MF+ PYS FEL+I PVA+K+ Sbjct: 80 VDIVPLTSPSRIPALEAGKVDFLVATLAPTPERARAIMFSAPYSAFELTIFAPVAAKYAK 139 Query: 61 LNDLVKKKVGVSRGSTNDTALTRLAPAGTVLVRFEDDSTVTQALLSGQVDAISIPNTMAT 120 L +L KKKVGV+RG+T D+ALTRLA G +VRFEDD+T QAL+S QV+AI++PNT Sbjct: 140 LTELGKKKVGVTRGTTQDSALTRLAVPGMNIVRFEDDATCAQALISNQVEAIALPNTTGN 199 Query: 121 EIVKTRGAGKIDIKFPYSVQPNSMTVRKGAFDLQQWLNNFIYYVKLNGELDAISRKWSGS 180 EI+K RGAGK D KF +SVQPNSM VR+ AF+L+QWLN I YVKLNGELDAI++KW+G Sbjct: 200 EIMKARGAGKFDAKFAFSVQPNSMAVRRDAFELRQWLNTTISYVKLNGELDAIAQKWTGK 259 Query: 181 PLPNLPVF 188 LP L F Sbjct: 260 SLPALQAF 267 >ref|YP_550768.1| extracellular solute-binding protein [Polaromonas sp. JS666] gb|ABE45870.1| amino acid ABC transporter substrate-binding protein, PAAT family [Polaromonas sp. JS666] Length = 268 Score = 228 bits (582), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 113/189 (59%), Positives = 142/189 (75%), Gaps = 1/189 (0%) Query: 1 VEIVPLVPPARIPALESGKVDFLAATLAPTPERAKSVMFTIPYSGFELSIVGPVASKFKN 60 +E+V L PPARIPALESGKVDFL +TLAPTPERAK+VMFTIPY+ F++ I A K K+ Sbjct: 80 LEMVALEPPARIPALESGKVDFLVSTLAPTPERAKTVMFTIPYNAFQVGIYAKKALKVKD 139 Query: 61 LNDLVKKKVGVSRGSTNDTALTRL-APAGTVLVRFEDDSTVTQALLSGQVDAISIPNTMA 119 DL KKVGV+RGS+ + AL + G +VRF+ D+ V QA+ SGQ+DA + P+TMA Sbjct: 140 WGDLKGKKVGVNRGSSVEAALVKQEGLVGLKVVRFDTDAAVIQAVFSGQIDACAEPDTMA 199 Query: 120 TEIVKTRGAGKIDIKFPYSVQPNSMTVRKGAFDLQQWLNNFIYYVKLNGELDAISRKWSG 179 + +K R G + +KF +S QPNS+ VRK AF+LQQWLNN IYY+K+NGELD I+RKW G Sbjct: 200 NQSLKARPDGDMALKFFFSKQPNSIAVRKDAFELQQWLNNTIYYIKVNGELDEIARKWVG 259 Query: 180 SPLPNLPVF 188 SPLP LP F Sbjct: 260 SPLPELPTF 268 >ref|NP_354406.2| ABC transporter, substrate binding protein (amino acid) [Agrobacterium tumefaciens str. C58] gb|AAK87191.2| ABC transporter, substrate binding protein (amino acid) [Agrobacterium tumefaciens str. C58] Length = 267 Score = 218 bits (555), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 109/189 (57%), Positives = 134/189 (70%), Gaps = 1/189 (0%) Query: 1 VEIVPLVPPARIPALESGKVDFLAATLAPTPERAKSVMFTIPYSGFELSIVGPVASKFKN 60 V +V L PP+RIPALESGKVDFL ATLAPTPERAK+VMFT PYS F++ I +K + Sbjct: 79 VTMVQLTPPSRIPALESGKVDFLVATLAPTPERAKAVMFTNPYSAFQVGIYSHKDTKIEK 138 Query: 61 LNDLVKKKVGVSRGSTNDTA-LTRLAPAGTVLVRFEDDSTVTQALLSGQVDAISIPNTMA 119 DL VGV+RGS+ + + R G ++RF+DD+T QAL SGQV AI+ P+ A Sbjct: 139 WEDLKGMTVGVNRGSSVEREFVNREKELGLTILRFDDDATTMQALFSGQVQAIAGPDAQA 198 Query: 120 TEIVKTRGAGKIDIKFPYSVQPNSMTVRKGAFDLQQWLNNFIYYVKLNGELDAISRKWSG 179 +K RG ++KF +S+QPNSMTVRK A DL QWLNN IYY+K NGELDAI+RKW G Sbjct: 199 NAAIKLRGDTTTEVKFFFSIQPNSMTVRKDAVDLHQWLNNTIYYIKQNGELDAIARKWVG 258 Query: 180 SPLPNLPVF 188 +PLP LP F Sbjct: 259 TPLPVLPTF 267