BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0027.p         (69 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774918.1| amino-acid ABC transporter periplasmic prote...    69   2e-10
ref|YP_550768.1| extracellular solute-binding protein [Polaromon...    67   1e-09
ref|YP_004681936.1| LacI family transcriptional regulator [Cupri...    66   2e-09
ref|YP_841319.1| ABC transporter periplasmic protein [Ralstonia ...    65   5e-09

>ref|YP_003774918.1| amino-acid ABC transporter periplasmic protein [Herbaspirillum
          seropedicae SmR1]
 gb|ADJ63010.1| ABC-type amino-acid transport system, periplasmic component
          protein [Herbaspirillum seropedicae SmR1]
          Length = 267

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/65 (76%), Positives = 56/65 (86%)

Query: 1  MSIKNLLSTKFIALTLAATCAVGAAASASAQTVADLIKKGKVTIGVVSGTPPFGSVDAKG 60
          MSIK + + KF+ALTLAA CAV   ASASAQ++ADL KKGK+TIGVVSGTPPFGSVDAKG
Sbjct: 1  MSIKKIFNAKFLALTLAAACAVATTASASAQSIADLTKKGKITIGVVSGTPPFGSVDAKG 60

Query: 61 EPIGY 65
           PIGY
Sbjct: 61 TPIGY 65


>ref|YP_550768.1| extracellular solute-binding protein [Polaromonas sp. JS666]
 gb|ABE45870.1| amino acid ABC transporter substrate-binding protein, PAAT family
          [Polaromonas sp. JS666]
          Length = 268

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 47/69 (68%), Gaps = 1/69 (1%)

Query: 1  MSIKNLLSTKFIALTLAATCAVGAAASASAQTVADLIKKGKVTIGVVSGTPPFGSVDAKG 60
          M IK +L    + LT+ A+ A+  +  ASAQTV D+IK+GKV IGV+ G PP G+VD+ G
Sbjct: 1  MQIKKILRVAAVGLTVLASVAL-TSTMASAQTVTDIIKRGKVKIGVLVGAPPMGAVDSSG 59

Query: 61 EPIGYXSPT 69
           P+GY + T
Sbjct: 60 NPVGYDADT 68


>ref|YP_004681936.1| LacI family transcriptional regulator [Cupriavidus necator N-1]
 gb|AEI80704.1| ABC transport system permease protein PAAT family [Cupriavidus
          necator N-1]
          Length = 267

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/65 (52%), Positives = 45/65 (69%), Gaps = 1/65 (1%)

Query: 1  MSIKNLLSTKFIALTLAATCAVGAAASASAQTVADLIKKGKVTIGVVSGTPPFGSVDAKG 60
          M+++ LL  +  A  L       AA +A AQTVA+++KKGKVTIGVV+G PPFG+ DA G
Sbjct: 1  MNVQRLLR-RVAAPVLTLLVLTSAAFTAQAQTVAEIVKKGKVTIGVVTGAPPFGTTDATG 59

Query: 61 EPIGY 65
          +P GY
Sbjct: 60 KPAGY 64


>ref|YP_841319.1| ABC transporter periplasmic protein [Ralstonia eutropha H16]
 emb|CAJ96589.1| ABC-type transporter, periplasmic component: PAAT family
          [Ralstonia eutropha H16]
          Length = 267

 Score = 64.7 bits (156), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/65 (50%), Positives = 45/65 (69%), Gaps = 1/65 (1%)

Query: 1  MSIKNLLSTKFIALTLAATCAVGAAASASAQTVADLIKKGKVTIGVVSGTPPFGSVDAKG 60
          M+++ LL  +  A  L       AA +A AQTVA+++KKG+VTIGVV+G PPFG+ DA G
Sbjct: 1  MNVQRLLR-RAAAPVLTLLVLTSAAFTAQAQTVAEIVKKGRVTIGVVTGAPPFGTTDATG 59

Query: 61 EPIGY 65
          +P GY
Sbjct: 60 KPAGY 64