BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0021.p (161 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774899.1| NAD-dependent formate dehydrogenase beta sub... 290 7e-77 ref|YP_004847354.1| formate dehydrogenase subunit beta [Pseudogu... 269 1e-70 ref|ZP_03698685.1| NADH dehydrogenase (quinone) [Lutiella nitrof... 267 4e-70 ref|YP_001101655.1| NAD dependent formate dehydrogenase subunit ... 266 1e-69 ref|YP_004752658.1| NAD-dependent formate dehydrogenase subunit ... 265 2e-69 >ref|YP_003774899.1| NAD-dependent formate dehydrogenase beta subunit [Herbaspirillum seropedicae SmR1] gb|ADJ62991.1| NAD-dependent formate dehydrogenase beta subunit protein [Herbaspirillum seropedicae SmR1] Length = 520 Score = 290 bits (741), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 134/161 (83%), Positives = 149/161 (92%), Gaps = 4/161 (2%) Query: 1 LRQLLEDFGGGTLSGRPIRAVQVGGPLGAYMPQQQLDTPLDYEAFAAIGAMVGHGGMVVF 60 LRQLLEDFGGG+ SGRPIRAVQ+GGPLGAY+PQ Q DTPLDYEAFAAIGAM+GHGG+V F Sbjct: 364 LRQLLEDFGGGSASGRPIRAVQMGGPLGAYLPQSQFDTPLDYEAFAAIGAMIGHGGLVAF 423 Query: 61 DDGVDMAQQARYAMEFCAIESCGKCTPCRIGSTRGVEVIDKIIANEGGKDSRPQQIHLLR 120 DD VDMA+QARYAM+FCA+ESCGKCTPCRIGSTRGVEVIDKIIAN D R QQIHLL+ Sbjct: 424 DDSVDMARQARYAMQFCAVESCGKCTPCRIGSTRGVEVIDKIIAN----DDRAQQIHLLK 479 Query: 121 DLCDTMLNGSLCAMGGLTPYPVLSALNHFPEDFGSPAEEAA 161 LCDTM+NGSLCAMGG+TP+PVLSALNHFPEDFG+P+E+AA Sbjct: 480 SLCDTMVNGSLCAMGGMTPFPVLSALNHFPEDFGAPSEQAA 520 >ref|YP_004847354.1| formate dehydrogenase subunit beta [Pseudogulbenkiania sp. NH8B] dbj|BAK76940.1| formate dehydrogenase, beta subunit [Pseudogulbenkiania sp. NH8B] Length = 514 Score = 269 bits (688), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 127/155 (81%), Positives = 140/155 (90%), Gaps = 4/155 (2%) Query: 1 LRQLLEDFGGGTLSGRPIRAVQVGGPLGAYMPQQQLDTPLDYEAFAAIGAMVGHGGMVVF 60 LR+LL DFGGG+ SGRPIRAVQVGGPLGAY+P+ Q DTPLDYEAFAA+GA+VGHGG+V F Sbjct: 359 LRELLHDFGGGSASGRPIRAVQVGGPLGAYLPESQFDTPLDYEAFAALGAVVGHGGIVAF 418 Query: 61 DDGVDMAQQARYAMEFCAIESCGKCTPCRIGSTRGVEVIDKIIANEGGKDSRPQQIHLLR 120 DD VDMA+QARYAMEFCAIESCGKCTPCRIGSTRGVEVI +I +E RPQQI LLR Sbjct: 419 DDSVDMAEQARYAMEFCAIESCGKCTPCRIGSTRGVEVIQRIQKDE----KRPQQIALLR 474 Query: 121 DLCDTMLNGSLCAMGGLTPYPVLSALNHFPEDFGS 155 DLCDTML+GSLCAMGG+TPYPVLSALNHFPEDFG+ Sbjct: 475 DLCDTMLHGSLCAMGGMTPYPVLSALNHFPEDFGA 509 >ref|ZP_03698685.1| NADH dehydrogenase (quinone) [Lutiella nitroferrum 2002] gb|EEG08679.1| NADH dehydrogenase (quinone) [Lutiella nitroferrum 2002] Length = 514 Score = 267 bits (682), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 126/155 (81%), Positives = 139/155 (89%), Gaps = 4/155 (2%) Query: 1 LRQLLEDFGGGTLSGRPIRAVQVGGPLGAYMPQQQLDTPLDYEAFAAIGAMVGHGGMVVF 60 LR+LL DFGGG+ SGRPIRAVQVGGPLGAY+P+ Q DTPLDYEAFAA+GA+VGHGG+V F Sbjct: 359 LRELLHDFGGGSASGRPIRAVQVGGPLGAYLPESQFDTPLDYEAFAALGAVVGHGGIVAF 418 Query: 61 DDGVDMAQQARYAMEFCAIESCGKCTPCRIGSTRGVEVIDKIIANEGGKDSRPQQIHLLR 120 DD VDM +QARYAMEFCAIESCGKCTPCRIGSTRGVEVI +I +E RPQQI LLR Sbjct: 419 DDTVDMVEQARYAMEFCAIESCGKCTPCRIGSTRGVEVIQRIQKDE----KRPQQIALLR 474 Query: 121 DLCDTMLNGSLCAMGGLTPYPVLSALNHFPEDFGS 155 DLCDTML+GSLCAMGG+TPYPVLSALNHFPEDFG+ Sbjct: 475 DLCDTMLHGSLCAMGGMTPYPVLSALNHFPEDFGA 509 >ref|YP_001101655.1| NAD dependent formate dehydrogenase subunit beta: fdsB [Herminiimonas arsenicoxydans] emb|CAL63534.1| NAD-dependent formate dehydrogenase beta subunit [Herminiimonas arsenicoxydans] Length = 525 Score = 266 bits (679), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 122/154 (79%), Positives = 136/154 (88%), Gaps = 4/154 (2%) Query: 1 LRQLLEDFGGGTLSGRPIRAVQVGGPLGAYMPQQQLDTPLDYEAFAAIGAMVGHGGMVVF 60 LR+LL DFGGG+ SGRPIRAVQVGGPLGAYMP+ DTP DYEAFAA+ + VGHGG+V F Sbjct: 368 LRELLYDFGGGSESGRPIRAVQVGGPLGAYMPESLFDTPFDYEAFAAVASTVGHGGLVAF 427 Query: 61 DDGVDMAQQARYAMEFCAIESCGKCTPCRIGSTRGVEVIDKIIANEGGKDSRPQQIHLLR 120 DD VDMA+QARYAM FCA+ESCGKCTPCRIGSTRGVEV+DKIIAN+ +RPQQIHLLR Sbjct: 428 DDTVDMAKQARYAMHFCAVESCGKCTPCRIGSTRGVEVMDKIIANQ----NRPQQIHLLR 483 Query: 121 DLCDTMLNGSLCAMGGLTPYPVLSALNHFPEDFG 154 DLCD M+ GSLCAMG +TP+PVLSALNHFPEDFG Sbjct: 484 DLCDVMVTGSLCAMGNMTPFPVLSALNHFPEDFG 517 >ref|YP_004752658.1| NAD-dependent formate dehydrogenase subunit beta [Collimonas fungivorans Ter331] gb|AEK61835.1| NAD-dependent formate dehydrogenase beta subunit [Collimonas fungivorans Ter331] Length = 530 Score = 265 bits (676), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 126/158 (79%), Positives = 137/158 (86%), Gaps = 2/158 (1%) Query: 1 LRQLLEDFGGGTLSGRPIRAVQVGGPLGAYMPQQQLDTPLDYEAFAAIGAMVGHGGMVVF 60 LR+LL DFGGGT SGR +RAVQVGGPLG Y+P DTPLDYEAFAA+G VGHGGMVVF Sbjct: 365 LRELLFDFGGGTESGRTMRAVQVGGPLGPYLPPALFDTPLDYEAFAAVGGTVGHGGMVVF 424 Query: 61 DDGVDMAQQARYAMEFCAIESCGKCTPCRIGSTRGVEVIDKIIANEGGKDS--RPQQIHL 118 DD VDMAQQARY+MEFC +ESCGKCTPCRIGSTRGVEVIDKIIAN ++ R QQIHL Sbjct: 425 DDSVDMAQQARYSMEFCVVESCGKCTPCRIGSTRGVEVIDKIIANANPANTGQRQQQIHL 484 Query: 119 LRDLCDTMLNGSLCAMGGLTPYPVLSALNHFPEDFGSP 156 LRDLCDTM+NGSLCAMG +TP PVLSALNHFPEDFG+P Sbjct: 485 LRDLCDTMINGSLCAMGSMTPLPVLSALNHFPEDFGAP 522