BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0016.p (313 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774894.1| LysR family transcription regulator protein ... 504 e-141 ref|YP_935361.1| LysR family transcriptional regulator [Azoarcus... 369 e-100 ref|YP_004682007.1| IclR family transcriptional regulator [Cupri... 352 5e-95 ref|YP_001861877.1| LysR family transcriptional regulator [Burkh... 350 2e-94 ref|ZP_04764813.1| transcriptional regulator, LysR family [Acido... 349 4e-94 >ref|YP_003774894.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62986.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 304 Score = 504 bits (1298), Expect = e-141, Method: Compositional matrix adjust. Identities = 241/293 (82%), Positives = 263/293 (89%) Query: 9 PLLEDLRLFCVVARKNSFAESAKEMGSSPAYISKRIALLEAALGVRLFHRTTRSVVMTEE 68 PLLEDLRLFCVVAR +SFA SA+E+G+SPAYISKRIALLE ALGVRLFHRTTRSVVMTEE Sbjct: 5 PLLEDLRLFCVVARHSSFAGSAREVGASPAYISKRIALLEQALGVRLFHRTTRSVVMTEE 64 Query: 69 GSNVHEWARRILDDVDQMLETVSSAKQVPRGLLKISTSFALGRKYVSPLLSEFARLHPAL 128 G NVHEWARRILDDV+QM+ETVSSAK+VPRGLLKISTSF LGRK VSPLLS FA HP L Sbjct: 65 GGNVHEWARRILDDVEQMMETVSSAKRVPRGLLKISTSFGLGRKVVSPLLSRFASEHPEL 124 Query: 129 RIQLELFDRQVDMINEGFDLDIRVGPVHEPHLFAKRIIASQRVLCASPDYLARHGAPQTL 188 +IQLEL DRQ+D++NEG DLDIRVG HEPHLF+KRI+ SQRVLCASP YL +HG P L Sbjct: 125 KIQLELVDRQIDLVNEGIDLDIRVGAGHEPHLFSKRILPSQRVLCASPAYLKKHGLPADL 184 Query: 189 SDLTQHQCLVIRERNQSFGIWRMMGPNGAETVKVAGGLASNHGEIIHQWAIDGHGVILRS 248 + L QHQCLVIRERNQSFGIWRMMGP G ETVKV+G LASNHGEIIHQWA+DGHG+ILRS Sbjct: 185 AALRQHQCLVIRERNQSFGIWRMMGPKGVETVKVSGMLASNHGEIIHQWAVDGHGIILRS 244 Query: 249 IWDVAASLKDGSLVRVLPAYFQEADLCAVYPLQLKNSAKIRECVRFLQKNLNV 301 WDVA SLK G LVRVLP Y+QEADLCAVYPLQLKNSAK+RECVRFLQK+L+V Sbjct: 245 AWDVADSLKRGRLVRVLPQYYQEADLCAVYPLQLKNSAKVRECVRFLQKHLDV 297 >ref|YP_935361.1| LysR family transcriptional regulator [Azoarcus sp. BH72] emb|CAL96475.1| putative transcriptional regulator, LysR family [Azoarcus sp. BH72] Length = 306 Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust. Identities = 175/299 (58%), Positives = 226/299 (75%), Gaps = 4/299 (1%) Query: 1 VNNQSVAPPLLEDLRLFCVVARKNSFAESAKEMGSSPAYISKRIALLEAALGVRLFHRTT 60 +NN+ PLLEDLRL+C V R+ FA SA+E+G S AY+SKRIALLE ALG +L HRTT Sbjct: 1 MNNK----PLLEDLRLYCTVVRRRGFAASARELGVSNAYVSKRIALLEDALGAKLLHRTT 56 Query: 61 RSVVMTEEGSNVHEWARRILDDVDQMLETVSSAKQVPRGLLKISTSFALGRKYVSPLLSE 120 RSV +TE+G V +WA+RI+DDVD++ E VS+ K P GLL++ TS GR V P L+ Sbjct: 57 RSVSLTEQGEVVLQWAQRIVDDVDRLAEAVSAEKMAPAGLLRVCTSSGFGRNRVGPALAA 116 Query: 121 FARLHPALRIQLELFDRQVDMINEGFDLDIRVGPVHEPHLFAKRIIASQRVLCASPDYLA 180 A +PA+ IQLEL DR VD+I EGF LDIRVG V EP L ++RI ++RVLCA+PDY+A Sbjct: 117 LAERYPAVEIQLELLDRPVDLIGEGFQLDIRVGAVREPDLISRRIARNERVLCAAPDYVA 176 Query: 181 RHGAPQTLSDLTQHQCLVIRERNQSFGIWRMMGPNGAETVKVAGGLASNHGEIIHQWAID 240 RHG P L++L +H+C+VIRER+Q FG W + GP+G ETVKV G L++N+GE++ QWA+ Sbjct: 177 RHGTPADLAELARHRCIVIRERDQDFGRWTLTGPDGPETVKVGGPLSANNGEVVRQWALA 236 Query: 241 GHGVILRSIWDVAASLKDGSLVRVLPAYFQEADLCAVYPLQLKNSAKIRECVRFLQKNL 299 GHG+ILRS WDV +L G LV+VLPAY QEAD+ AVYP +L +SAK+R CV FL++ L Sbjct: 237 GHGIILRSRWDVGPALARGELVQVLPAYRQEADVWAVYPSRLSSSAKVRVCVEFLEEWL 295 >ref|YP_004682007.1| IclR family transcriptional regulator [Cupriavidus necator N-1] gb|AEI80775.1| transcriptional regulator LysR family [Cupriavidus necator N-1] Length = 315 Score = 352 bits (902), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 164/292 (56%), Positives = 215/292 (73%) Query: 9 PLLEDLRLFCVVARKNSFAESAKEMGSSPAYISKRIALLEAALGVRLFHRTTRSVVMTEE 68 P L DLRLFC VAR+ SF +A E G SPA++SKRIA+LEA LG +LFHRTTR V +T E Sbjct: 13 PFLRDLRLFCTVARRASFIAAANETGISPAHVSKRIAMLEAMLGAKLFHRTTRRVSVTAE 72 Query: 69 GSNVHEWARRILDDVDQMLETVSSAKQVPRGLLKISTSFALGRKYVSPLLSEFARLHPAL 128 G + WA++IL+DVD MLE V + PRGLL+I+TS LGR++V+P LS R HP L Sbjct: 73 GESAFAWAQKILEDVDGMLEAVGATGGEPRGLLRIATSVRLGRRHVAPALSRLRRQHPGL 132 Query: 129 RIQLELFDRQVDMINEGFDLDIRVGPVHEPHLFAKRIIASQRVLCASPDYLARHGAPQTL 188 + LEL DR+VD+I E FDLDIRVG V EPHL A +I + RVLCA+P YLAR G P+ Sbjct: 133 EVWLELLDRRVDLIGESFDLDIRVGEVEEPHLIASKIASGSRVLCAAPAYLARRGMPEHP 192 Query: 189 SDLTQHQCLVIRERNQSFGIWRMMGPNGAETVKVAGGLASNHGEIIHQWAIDGHGVILRS 248 +L +H CL++RER+Q+FG+WR+ GP+G ETVKV G +ASNH ++ HQWA++G G+I+ S Sbjct: 193 GELPRHDCLLLRERDQAFGVWRLQGPDGWETVKVTGPMASNHSDVTHQWALEGFGIIMAS 252 Query: 249 IWDVAASLKDGSLVRVLPAYFQEADLCAVYPLQLKNSAKIRECVRFLQKNLN 300 +WDVAAS++ G LVRVLP + Q AD+ AV + SA++R C+ FL+ L+ Sbjct: 253 VWDVAASVRAGELVRVLPDWQQPADVWAVTSARASASARMRVCLEFLKAQLS 304 >ref|YP_001861877.1| LysR family transcriptional regulator [Burkholderia phymatum STM815] gb|ACC74831.1| transcriptional regulator, LysR family [Burkholderia phymatum STM815] Length = 318 Score = 350 bits (897), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 161/291 (55%), Positives = 219/291 (75%) Query: 10 LLEDLRLFCVVARKNSFAESAKEMGSSPAYISKRIALLEAALGVRLFHRTTRSVVMTEEG 69 L DL+LFC VAR+ SF ++ EMG SP+++SKRIALLE +LGV+LF RTTR V +T +G Sbjct: 14 FLRDLQLFCTVARRASFVTASAEMGISPSHVSKRIALLEKSLGVKLFMRTTRRVSVTSDG 73 Query: 70 SNVHEWARRILDDVDQMLETVSSAKQVPRGLLKISTSFALGRKYVSPLLSEFARLHPALR 129 +WA++ILDDV M + + K PRG+L+ISTS LGR++VSP+LS + +P L Sbjct: 74 EAAFQWAQKILDDVQGMADAFAGLKSDPRGVLRISTSLRLGREHVSPILSLLRKRYPGLE 133 Query: 130 IQLELFDRQVDMINEGFDLDIRVGPVHEPHLFAKRIIASQRVLCASPDYLARHGAPQTLS 189 I LEL DR+VD++ EGFD+DIRVG + EPHL A +I+ S R+LCASP+YL R G P+TL+ Sbjct: 134 IWLELLDRRVDLVGEGFDIDIRVGNIQEPHLIAHKIVGSARILCASPEYLKRAGTPRTLA 193 Query: 190 DLTQHQCLVIRERNQSFGIWRMMGPNGAETVKVAGGLASNHGEIIHQWAIDGHGVILRSI 249 DL QH CL+ RER+Q FG WR+ GP+G ++VKV G +ASNH +I+ QWA+DG G+I+ S+ Sbjct: 194 DLAQHDCLLFRERDQRFGAWRLTGPDGEKSVKVTGPIASNHSDIVQQWALDGDGIIMVSV 253 Query: 250 WDVAASLKDGSLVRVLPAYFQEADLCAVYPLQLKNSAKIRECVRFLQKNLN 300 WDVA+SL+ G+LVRVLP + Q AD+ AV + +SAK+R CV FL+++L Sbjct: 254 WDVASSLESGALVRVLPQHHQPADVWAVTSARASSSAKLRVCVDFLKQHLT 304 >ref|ZP_04764813.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN] gb|EER58386.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN] Length = 315 Score = 349 bits (895), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 163/288 (56%), Positives = 217/288 (75%) Query: 9 PLLEDLRLFCVVARKNSFAESAKEMGSSPAYISKRIALLEAALGVRLFHRTTRSVVMTEE 68 P EDLR+F VV RK SF E+A E+G+SPAY+SKRI LLE LGV+L HRTTR V +TEE Sbjct: 16 PATEDLRVFTVVVRKASFGEAATELGASPAYVSKRIRLLEQELGVKLLHRTTRRVAVTEE 75 Query: 69 GSNVHEWARRILDDVDQMLETVSSAKQVPRGLLKISTSFALGRKYVSPLLSEFARLHPAL 128 G V +WA+RILDD+DQ+L+ V+ ++ PRG L++S+SF GR+ V+P +S H L Sbjct: 76 GERVFQWAQRILDDMDQLLQEVAVTRREPRGQLRVSSSFGFGRQIVAPAMSRLVAQHAGL 135 Query: 129 RIQLELFDRQVDMINEGFDLDIRVGPVHEPHLFAKRIIASQRVLCASPDYLARHGAPQTL 188 +++LE+FDR VD+ EGFDLD+RVG PHL A+R+ + RVLCA+P YLARHG+P+TL Sbjct: 136 QVRLEVFDRLVDVAGEGFDLDVRVGDEIAPHLIARRLADNHRVLCAAPAYLARHGSPRTL 195 Query: 189 SDLTQHQCLVIRERNQSFGIWRMMGPNGAETVKVAGGLASNHGEIIHQWAIDGHGVILRS 248 +DL H CLVI+ER+ FG+WR+ G ETVKV G L++N+GE++ QWA+DG G+ LRS Sbjct: 196 ADLPGHDCLVIKERDHPFGVWRLRGGAMDETVKVRGPLSANNGEMVVQWAVDGRGIALRS 255 Query: 249 IWDVAASLKDGSLVRVLPAYFQEADLCAVYPLQLKNSAKIRECVRFLQ 296 +WDV A L+ G LV+VLP + QEA++ AVYP +L SAK+R CV FL+ Sbjct: 256 LWDVGAHLRAGRLVQVLPDWRQEANVWAVYPTRLDRSAKVRVCVEFLE 303