BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0140.p         (43 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775221.1| hypothetical protein Hsero_1803 [Herbaspiril...    67   8e-10

>ref|YP_003775221.1| hypothetical protein Hsero_1803 [Herbaspirillum seropedicae SmR1]
 gb|ADJ63313.1| hypothetical protein Hsero_1803 [Herbaspirillum seropedicae SmR1]
          Length = 257

 Score = 67.4 bits (163), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/43 (74%), Positives = 37/43 (86%)

Query: 1   VAVRNHLIDAGVDKERVVSRVATSENSVESNARVIIQYQAGQK 43
           VAVRN+LIDAGVDKERVVSRVATSEN    ++RV++QYQA  K
Sbjct: 215 VAVRNYLIDAGVDKERVVSRVATSENGAADDSRVVVQYQASAK 257