BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0119.p (305 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776747.1| C4-dicarboxylate transport sensor kinase tra... 411 e-113 ref|YP_004752903.1| transporter [Collimonas fungivorans Ter331] ... 377 e-102 ref|ZP_08272676.1| Transporter [Oxalobacteraceae bacterium IMCC9... 355 4e-96 gb|AEG70650.1| c4-dicarboxylate transport sensor kinase protein ... 243 2e-62 ref|ZP_00946680.1| Transporter [Ralstonia solanacearum UW551] >g... 239 3e-61 >ref|YP_003776747.1| C4-dicarboxylate transport sensor kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64839.1| C4-dicarboxylate transport sensor kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 600 Score = 411 bits (1057), Expect = e-113, Method: Compositional matrix adjust. Identities = 210/291 (72%), Positives = 241/291 (82%), Gaps = 3/291 (1%) Query: 12 YQRRRRLQERLESRDALRRAAQELDATIAVRTQELRVANQALEGKYVTLQQTESLLRSTQ 71 YQ RRRL+ER+ SRDALRRAA EL+ IA RT +L ANQALE +Y LQQTESLLR+TQ Sbjct: 308 YQHRRRLEERMASRDALRRAAAELEQRIAERTGQLTAANQALEARYEKLQQTESLLRTTQ 367 Query: 72 NELVQAGKLAMLGQMAAGVTHELNQPLAAIRAFADNAVQFMRRGQLPQVEENLEHISGAS 131 NELVQAGKLAMLGQMAAGVTHELNQPL AIRAFADNAV+F+ RGQ Q ENLE+IS AS Sbjct: 368 NELVQAGKLAMLGQMAAGVTHELNQPLTAIRAFADNAVKFLARGQSAQAVENLEYISSAS 427 Query: 132 AHMGKIIAQLKGFARKSGDAIAVVDVAQTVEAAVLLLRNEFRQQAVSIEIDVRSPVQVMG 191 A MGKIIAQLKGFARKSG+A+A VD++Q +EA+ LLL +E ++ +I ID+R+ V G Sbjct: 428 ATMGKIIAQLKGFARKSGEAVACVDLSQAIEASSLLLASECQKLGATISIDIRAAACVTG 487 Query: 192 DVVRTEQVLINLLRNAIDAVETVEYVADKRVTVIVEHEAGEAVIRIRDSGPGIPDEVAPH 251 DVVRTEQVL+NLLRNA+DAVE E+ KR+ V++E G A++RIRDSG GI DEVAPH Sbjct: 488 DVVRTEQVLVNLLRNALDAVEEAEH---KRIAVVLEVAGGYALVRIRDSGGGIADEVAPH 544 Query: 252 LFEPFFTTKPSGKGLGLGLAISSSIVQAMNGRLSAHNLPEGGAEFTVRLPV 302 LFEPFFTTK S KGLGLGLAISSSIVQAMNG+LSAHN EGGAEF VRLP+ Sbjct: 545 LFEPFFTTKSSSKGLGLGLAISSSIVQAMNGQLSAHNHEEGGAEFVVRLPL 595 >ref|YP_004752903.1| transporter [Collimonas fungivorans Ter331] gb|AEK62080.1| Transporter [Collimonas fungivorans Ter331] Length = 663 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 197/294 (67%), Positives = 237/294 (80%), Gaps = 10/294 (3%) Query: 9 WAIYQRRRRLQERLESRDALRRAAQELDATIAVRTQELRVANQALEGKYVTLQQTESLLR 68 WA+YQRRRRL+ERL S A+ LD TIA RTQEL VAN LE KY LQ+TE LLR Sbjct: 374 WALYQRRRRLEERLVS-------AEYLDRTIAQRTQELLVANHTLEAKYAKLQETEHLLR 426 Query: 69 STQNELVQAGKLAMLGQMAAGVTHELNQPLAAIRAFADNAVQFMRRGQLPQVEENLEHIS 128 STQN+L+QAGKLAMLGQMAAG+ HELNQPLAAIRAFADNA+ F+ RGQ + ENL HIS Sbjct: 427 STQNKLIQAGKLAMLGQMAAGIAHELNQPLAAIRAFADNAMTFLTRGQADKATENLGHIS 486 Query: 129 GASAHMGKIIAQLKGFARKSGDAIAVVDVAQTVEAAVLLLRNEFRQQAVSIEIDVRSPVQ 188 AS MGKI+ QL GF+RKS +A+A +D+++++EAA LLL NEF+ S++I++R + Sbjct: 487 NASGRMGKIVGQLNGFSRKSHEAVAAIDLSKSIEAAALLLHNEFQTHGASLQIEIRQAAR 546 Query: 189 VMGDVVRTEQVLINLLRNAIDAVETVEYVADKRVTVIVEHEAGEAVIRIRDSGPGIPDEV 248 V+GD VRTEQVLINLLRNA+DAV+ E K V++++E E GEAVIRIRDSGPGIP +V Sbjct: 547 VVGDSVRTEQVLINLLRNALDAVDNAE---QKTVSLVLECEGGEAVIRIRDSGPGIPAQV 603 Query: 249 APHLFEPFFTTKPSGKGLGLGLAISSSIVQAMNGRLSAHNLPEGGAEFTVRLPV 302 A HLFEPFFTTKPSGKGLGLGLAISSSIVQAMNGRL+A+N +GGAEF +R+P+ Sbjct: 604 ALHLFEPFFTTKPSGKGLGLGLAISSSIVQAMNGRLTANNHSDGGAEFVLRIPL 657 >ref|ZP_08272676.1| Transporter [Oxalobacteraceae bacterium IMCC9480] gb|EGF33854.1| Transporter [Oxalobacteraceae bacterium IMCC9480] Length = 604 Score = 355 bits (912), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 195/302 (64%), Positives = 231/302 (76%), Gaps = 3/302 (0%) Query: 1 MAIAAISLWAIYQRRRRLQERLESRDALRRAAQELDATIAVRTQELRVANQALEGKYVTL 60 M A +SLWA +QRRRRL+ER SR AL++AA+ELD I +RT EL AN+ L KY L Sbjct: 298 MLSAMLSLWARHQRRRRLEERQASRQALQQAAEELDLQITLRTGELLQANRDLGDKYARL 357 Query: 61 QQTESLLRSTQNELVQAGKLAMLGQMAAGVTHELNQPLAAIRAFADNAVQFMRRGQLPQV 120 + E LLR+TQ+ELVQAGKLAMLGQMAAGVTHELNQPLAAIRAFADNAV F+ RGQ Q Sbjct: 358 EHAEQLLRTTQDELVQAGKLAMLGQMAAGVTHELNQPLAAIRAFADNAVTFLERGQPAQA 417 Query: 121 EENLEHISGASAHMGKIIAQLKGFARKSGDAIAVVDVAQTVEAAVLLLRNEFRQQAVSIE 180 NL HIS ASA MG II QLKGFARKS ++A+V++ +V A+ LLL+ EF + V ++ Sbjct: 418 SANLAHISAASARMGVIIGQLKGFARKSHGSVALVELTPSVHASALLLQAEFDRLGVVLQ 477 Query: 181 IDVRSPVQVMGDVVRTEQVLINLLRNAIDAVETVEYVADKRVTVIVEHEAGEAVIRIRDS 240 +D+ P+Q+ GD VR EQVLINLLRNA+DAVE + V + V E A+I +RDS Sbjct: 478 LDIAGPLQITGDAVRLEQVLINLLRNALDAVEEAP---QRHVALSVAREGDHALICVRDS 534 Query: 241 GPGIPDEVAPHLFEPFFTTKPSGKGLGLGLAISSSIVQAMNGRLSAHNLPEGGAEFTVRL 300 GPGIPD+VA LF PFFTTKPSGKGLGLGLAISSSIVQAM G+LSAHNLP GGAEF +RL Sbjct: 535 GPGIPDDVAAQLFAPFFTTKPSGKGLGLGLAISSSIVQAMRGQLSAHNLPGGGAEFQLRL 594 Query: 301 PV 302 P+ Sbjct: 595 PL 596 >gb|AEG70650.1| c4-dicarboxylate transport sensor kinase protein [Ralstonia solanacearum Po82] Length = 635 Score = 243 bits (621), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 145/300 (48%), Positives = 190/300 (63%), Gaps = 11/300 (3%) Query: 8 LWAIYQRRRRLQERLESRDALRRAAQELDATIAVRTQELRVANQALEGKYVTLQQTESLL 67 L A+ R RR +E+ +R ALR ++L+A IA RT EL AN AL K L T+ +L Sbjct: 332 LVALGLRARRHEEQRSARAALREVQRDLEARIAQRTVELTSANAALASKVEALDATQRIL 391 Query: 68 RSTQNELVQAGKLAMLGQMAAGVTHELNQPLAAIRAFADNAVQFMRRGQLPQVEENLEHI 127 R T++ VQAGKLA+LGQMAAG+THELNQPL A+ +DNA Q RG++ +V NL HI Sbjct: 392 RETRDAAVQAGKLAVLGQMAAGITHELNQPLTALTTLSDNANQLAERGRIDEVRGNLAHI 451 Query: 128 SGASAHMGKIIAQLKGFARKSGDAIAVVDVAQTVEAAVLLLRNEFRQQAVSIEIDVRSP- 186 + MG+I++ +KGFARK A A V V + + A++L+ + RQ V + + + P Sbjct: 452 GQLAHRMGRIVSHIKGFARKGDAARAAVPVEEAIRQALMLVDSRRRQAGVPVAVGLVPPG 511 Query: 187 VQVMGDVVRTEQVLINLLRNAIDAVETVEY--VADKRVTVIVEHEAGEA--VIRIRDSGP 242 V V + VR EQVL+NL+RNAIDA V A RVTV + G+A I +RD+GP Sbjct: 512 VAVWANAVRLEQVLVNLIRNAIDATAEVPQPEAAGVRVTV----DVGDALVCITVRDAGP 567 Query: 243 GIPDEVAPHLFEPFFTTKPSGKGLGLGLAISSSIVQAMNGRLSAHNLPE--GGAEFTVRL 300 GI +V PHLFEPFFTTK G+GLGLGLAIS +IV+ GRL N + GGA F + L Sbjct: 568 GIAPQVLPHLFEPFFTTKADGQGLGLGLAISLAIVEDFGGRLEGRNADDGAGGAAFVIEL 627 >ref|ZP_00946680.1| Transporter [Ralstonia solanacearum UW551] ref|YP_002256927.1| c4-dicarboxylate transport sensor kinase protein [Ralstonia solanacearum IPO1609] gb|EAP70825.1| Transporter [Ralstonia solanacearum UW551] emb|CAQ58808.1| c4-dicarboxylate transport sensor kinase protein [Ralstonia solanacearum IPO1609] Length = 635 Score = 239 bits (611), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 144/300 (48%), Positives = 188/300 (62%), Gaps = 11/300 (3%) Query: 8 LWAIYQRRRRLQERLESRDALRRAAQELDATIAVRTQELRVANQALEGKYVTLQQTESLL 67 L A+ R RR +E+ +R ALR ++L+A IA RT EL AN AL K L T+ +L Sbjct: 332 LVALGLRARRHEEQRSARAALREVQRDLEARIAQRTVELTSANAALASKVEALDATQRIL 391 Query: 68 RSTQNELVQAGKLAMLGQMAAGVTHELNQPLAAIRAFADNAVQFMRRGQLPQVEENLEHI 127 R T++ VQAGKLA+LGQMAAG+THELNQPL A+ +DNA Q RG++ +V NL HI Sbjct: 392 RETRDAAVQAGKLAVLGQMAAGITHELNQPLTALTTLSDNANQLAERGRIDEVRGNLAHI 451 Query: 128 SGASAHMGKIIAQLKGFARKSGDAIAVVDVAQTVEAAVLLLRNEFRQQAVSIEIDVRSP- 186 + MG+I++ +KGFARK A A V V + + A++L+ RQ V + + + P Sbjct: 452 GQLAHRMGRIVSHIKGFARKGDAARAAVPVEEAIRQALMLVDTRRRQAGVPVTVGLVPPG 511 Query: 187 VQVMGDVVRTEQVLINLLRNAIDAVETVEY--VADKRVTVIVEHEAGEA--VIRIRDSGP 242 V V + VR EQVL+NL+RNAIDA V A RVTV + G+A I +RD+GP Sbjct: 512 VAVWANAVRLEQVLVNLIRNAIDATAEVPQPEAAGVRVTV----DVGDALVCITVRDAGP 567 Query: 243 GIPDEVAPHLFEPFFTTKPSGKGLGLGLAISSSIVQAMNGRLSAHNLPE--GGAEFTVRL 300 GI +V HLFEPFFTTK G+GLGLGLAIS +IV+ GRL N + GGA F + L Sbjct: 568 GIAPQVLSHLFEPFFTTKADGQGLGLGLAISLAIVEDFGGRLEGRNADDGAGGAAFVIEL 627