BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0118.p         (195 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004752903.1| transporter [Collimonas fungivorans Ter331] ...   201   5e-50
ref|YP_003776747.1| C4-dicarboxylate transport sensor kinase tra...   195   3e-48
ref|ZP_08272676.1| Transporter [Oxalobacteraceae bacterium IMCC9...   184   5e-45
ref|YP_001768206.1| integral membrane sensor signal transduction...   118   5e-25
ref|ZP_02361480.1| C4-dicarboxylate transport sensor protein [Bu...   115   3e-24

>ref|YP_004752903.1| transporter [Collimonas fungivorans Ter331]
 gb|AEK62080.1| Transporter [Collimonas fungivorans Ter331]
          Length = 663

 Score =  201 bits (510), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 91/150 (60%), Positives = 115/150 (76%)

Query: 21  VFFASYFVAAEKARSDLHAAGERQLQIVALDLQSILDKFEIMPYALGALADVDQVLHHPD 80
           V   +Y VA+ KA SD+  A ERQLQI+ALDL+S+L KFE +P+ALG   DV Q L  PD
Sbjct: 89  VVLTTYVVASRKASSDIGEASERQLQIIALDLESVLQKFETLPFALGFQTDVSQALARPD 148

Query: 81  DAAAVQRLNLSLQAIQKQSKVLAIYMMDARGMTLAASNWNEEASFVGRDFGFRPYFAEAL 140
           D   +QRLN +LQ IQ+QSKV+AI+M+D  G+TLA+SNW+ + SF+GRDFGFRPYF EA+
Sbjct: 149 DKLNIQRLNQTLQLIQRQSKVVAIFMLDRNGLTLASSNWDSDTSFIGRDFGFRPYFKEAI 208

Query: 141 AGGSGRFYGIGNISSEPGYFMAQPIYPAGA 170
            G  GRFYGIGN ++ PGYF+AQPIY + A
Sbjct: 209 KGNPGRFYGIGNTTNVPGYFIAQPIYASAA 238


>ref|YP_003776747.1| C4-dicarboxylate transport sensor kinase transcription regulator
           protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ64839.1| C4-dicarboxylate transport sensor kinase transcription regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 600

 Score =  195 bits (496), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 95/161 (59%), Positives = 117/161 (72%), Gaps = 7/161 (4%)

Query: 6   FFFFFFLFRCGGKSAVFFASYFVAAEKARSDLHAAGERQLQIVALDLQSILDKFEIMPYA 65
            F    L  CG        +Y +A  KA  D    G  QLQI ALDL+SIL K+E +P+A
Sbjct: 12  LFLVATLLVCG-------ITYRLALRKAEVDQKTQGAAQLQIAALDLESILQKYEALPFA 64

Query: 66  LGALADVDQVLHHPDDAAAVQRLNLSLQAIQKQSKVLAIYMMDARGMTLAASNWNEEASF 125
           LG  ADV QVL HPDD  AV RLN + + IQ+QS+ ++I+M+D RG+TLA+SNW++E SF
Sbjct: 65  LGFQADVRQVLQHPDDVLAVDRLNRAFKTIQQQSQAVSIFMLDRRGLTLASSNWDDEFSF 124

Query: 126 VGRDFGFRPYFAEALAGGSGRFYGIGNISSEPGYFMAQPIY 166
           VGRDFGFRPYF+EA+ G +GRFYGIGNISSEPGYF+AQPIY
Sbjct: 125 VGRDFGFRPYFSEAVQGRAGRFYGIGNISSEPGYFIAQPIY 165


>ref|ZP_08272676.1| Transporter [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF33854.1| Transporter [Oxalobacteraceae bacterium IMCC9480]
          Length = 604

 Score =  184 bits (468), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 82/145 (56%), Positives = 114/145 (78%)

Query: 25  SYFVAAEKARSDLHAAGERQLQIVALDLQSILDKFEIMPYALGALADVDQVLHHPDDAAA 84
           +Y++AA  ARSD+    ERQLQI+ALDLQS+L+KFE +P+AL    D+   L  P DAA 
Sbjct: 28  TYWLAARMARSDIDRQSERQLQIIALDLQSMLEKFETLPFALSVHPDLTAALLQPADAAT 87

Query: 85  VQRLNLSLQAIQKQSKVLAIYMMDARGMTLAASNWNEEASFVGRDFGFRPYFAEALAGGS 144
           V R+N +LQ +Q+Q++V AIY+MD +G+T+AASNWN+  +++GR+FGFRPYF +A+ GG+
Sbjct: 88  VARVNQTLQTVQRQARVAAIYLMDPQGLTIAASNWNDAQNYIGRNFGFRPYFRDAIDGGA 147

Query: 145 GRFYGIGNISSEPGYFMAQPIYPAG 169
           GRFYGIG+ +SEPGYF+AQP+   G
Sbjct: 148 GRFYGIGSTTSEPGYFIAQPVLANG 172


>ref|YP_001768206.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium sp. 4-46]
 gb|ACA15772.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium sp. 4-46]
          Length = 628

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 87/155 (56%)

Query: 15  CGGKSAVFFASYFVAAEKARSDLHAAGERQLQIVALDLQSILDKFEIMPYALGALADVDQ 74
           C   + + F         A   L A GER+L I    L   L +++ +P  +   A+V  
Sbjct: 20  CILSATIVFGVKDGVERSAIRQLQAEGERRLDIYVQSLNGELGRYDYLPTVIALNANVTA 79

Query: 75  VLHHPDDAAAVQRLNLSLQAIQKQSKVLAIYMMDARGMTLAASNWNEEASFVGRDFGFRP 134
           +L +PDD    +++N  LQ + + ++  A+Y++D +G+TLA+SNWN++ SFVG    +RP
Sbjct: 80  MLQNPDDQELRKKVNEYLQDVNESARSSAVYILDHQGVTLASSNWNDDISFVGVKLDYRP 139

Query: 135 YFAEALAGGSGRFYGIGNISSEPGYFMAQPIYPAG 169
           YF EAL    GRFYGIG  S  PGYF + PI   G
Sbjct: 140 YFLEALKSAHGRFYGIGTTSGIPGYFRSSPIIHDG 174


>ref|ZP_02361480.1| C4-dicarboxylate transport sensor protein [Burkholderia
           oklahomensis C6786]
          Length = 677

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 55/141 (39%), Positives = 86/141 (60%)

Query: 25  SYFVAAEKARSDLHAAGERQLQIVALDLQSILDKFEIMPYALGALADVDQVLHHPDDAAA 84
           ++ +  ++  +DL  +   ++   A  L+S LD++E +PY LG    V  VL  P D   
Sbjct: 72  TWTITWQRGVADLRNSAAARVDRTANALKSTLDRYESLPYLLGGHPFVQNVLAAPGDRRY 131

Query: 85  VQRLNLSLQAIQKQSKVLAIYMMDARGMTLAASNWNEEASFVGRDFGFRPYFAEALAGGS 144
           V R NL L+ + + +   A Y++ A G+ +AASNW    SF G  + FRPYF +A+ GG+
Sbjct: 132 VNRANLYLEDMNRHAHATATYVITADGLCVAASNWRGPDSFTGIGYRFRPYFIDAVKGGT 191

Query: 145 GRFYGIGNISSEPGYFMAQPI 165
           GRF+GIG IS +PGY+++QP+
Sbjct: 192 GRFFGIGTISRDPGYYISQPV 212