BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0116.p (537 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776428.1| methyl-accepting chemotaxis transducer trans... 766 0.0 ref|YP_523479.1| methyl-accepting chemotaxis sensory transducer ... 629 e-178 ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthin... 603 e-170 ref|ZP_04765383.1| methyl-accepting chemotaxis sensory transduce... 590 e-166 ref|YP_984491.1| methyl-accepting chemotaxis sensory transducer ... 580 e-163 >ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ64520.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/536 (77%), Positives = 468/536 (87%), Gaps = 2/536 (0%) Query: 1 MNIIGNMRIGKRLALGFAVILAFSIVITAIGIWRLQTVSSATREMMSQPLLKERLIGDWY 60 MNIIGNM IG+RL LGFA+IL FSI+I IG+WRL V+ ATREMM++PL ERL+ DWY Sbjct: 1 MNIIGNMNIGRRLTLGFALILTFSIIIAGIGLWRLDHVAQATREMMAEPLKTERLMADWY 60 Query: 61 ANLASGIRRTIAIAKSSDPALGPYFAAEAAASSKGSGEYQKKVEALLESDEEKKLFQKIG 120 NL +GIRRTIAIAKSSDPALGPYFAAE AASSK SGEYQK+VEALL + EEK LFQKIG Sbjct: 61 TNLVAGIRRTIAIAKSSDPALGPYFAAEVAASSKSSGEYQKQVEALLSTPEEKALFQKIG 120 Query: 121 EQRKLYLSSRDAINKAKAAGNIEEAERVLEKDFVPASNAYQDTMRQLVELQRKDIDETAK 180 E RKLYLSSRD INKAKAAGN EEA R+L++ FVP + AYQDTMR+LV+ QRK++D+TA+ Sbjct: 121 ELRKLYLSSRDEINKAKAAGNTEEAMRILDQVFVPNATAYQDTMRKLVDFQRKEMDDTAR 180 Query: 181 HIDIIAEDSRILLLALEGLILVLGVLCAWYLTVGITRPINSAVTISRRVAEGDLTSDVQV 240 ID IA SR L+L LEGLIL+LG++ A YLT+GIT+P++ AV +SR VAEGDL+S++ V Sbjct: 181 EIDAIAAKSRTLILVLEGLILLLGIVFARYLTLGITKPLHRAVDVSRCVAEGDLSSEIAV 240 Query: 241 GSKDETGQLLQALQDMNISLRGIVSNVRTGTDTIATASSEIAAGNLDLSSRTEQQASALE 300 S+DETGQLLQ+L+DMN SLRGIVSNVR+GTDTI+TASSEIAAGNLDLSSRTEQQAS+L Sbjct: 241 TSRDETGQLLQSLKDMNQSLRGIVSNVRSGTDTISTASSEIAAGNLDLSSRTEQQASSLA 300 Query: 301 ETASSMEELISTVKQNADNARQANQLAVSASEIATQGGGVVGQVVDTMGAINDSSRKIVD 360 ETAS+MEELISTV+QNADNARQA+QLA SAS +A QGGGVV QVVDTMGAIN SSRKIVD Sbjct: 301 ETASAMEELISTVRQNADNARQASQLANSASAVAEQGGGVVSQVVDTMGAINASSRKIVD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKVLIND 420 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAKEIK LIND Sbjct: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELIND 420 Query: 421 SVEKVGNGSKLVEQAGATMAEVVNSVRRVTDIVAEISSASEEQTTGIEQINHAITQMDQV 480 SV KV +GS+LVEQAG TM EVV+SVRRVTDIVAEIS+AS EQT GIEQIN AITQMDQV Sbjct: 421 SVGKVDDGSRLVEQAGNTMQEVVSSVRRVTDIVAEISAASTEQTHGIEQINLAITQMDQV 480 Query: 481 TQQNAALVEEAAAAAASMQSQADSLAQLVSVFTLSGTPALPAARRTIDITPSEPRL 536 TQQNAALVEEAAAAAASMQ+QA L Q+VSVF LS P RR ID+TPS P L Sbjct: 481 TQQNAALVEEAAAAAASMQTQAGRLMQMVSVFRLSERE--PLVRREIDVTPSSPVL 534 >ref|YP_523479.1| methyl-accepting chemotaxis sensory transducer [Rhodoferax ferrireducens T118] gb|ABD69948.1| methyl-accepting chemotaxis sensory transducer [Rhodoferax ferrireducens T118] Length = 583 Score = 629 bits (1621), Expect = e-178, Method: Compositional matrix adjust. Identities = 331/559 (59%), Positives = 410/559 (73%), Gaps = 22/559 (3%) Query: 1 MNIIGNMRIGKRLALGFAVILAFSIVITAIGIWRLQTVSSATREMMSQPLLKERLIGDWY 60 M I +M+IGKRL GFAV+LAF+++IT IG+W+L + +ATREM +PL KERLI DW Sbjct: 1 MKIFASMKIGKRLGFGFAVVLAFAVLITGIGVWQLNALGNATREMTREPLAKERLISDWS 60 Query: 61 ANLASGIRRTIAIAKSSDPALGPYFAAEAAASSKGSGEYQKKVEALLESDEEKKLFQKIG 120 N+ + RT A+AKSSDP+L P+F+ AA +K + K++E LL S EEK LF K+ Sbjct: 61 RNINVAVIRTTAVAKSSDPSLVPFFSTNAAEITKSTSALLKQIEPLLSSQEEKDLFSKVS 120 Query: 121 EQRKLYLSSRDAINKAKAAGNIEEAERVLEKDFVPASNAYQDTMRQLVELQRKDIDETAK 180 + RK YLSSRD + K KA G +EA R+LE ++PA++ Y + + + LQRK++D A Sbjct: 121 DVRKAYLSSRDQVTKLKADGQADEANRLLESTYIPAADNYMKLVSEFLGLQRKNLDAKAV 180 Query: 181 HIDIIAEDSRILLLALEGLILVLGVLCAWYLTVGITRPINSAVTISRRVAEGDLTSDVQV 240 I I SR L+AL L+L GV+CAW LTVGIT P+ +AV ++RRVA+GDL +D+Q Sbjct: 181 EISGIETTSRNYLVALAALVLTFGVICAWLLTVGITGPLTNAVAVARRVADGDLATDIQT 240 Query: 241 GSKDETGQLLQALQDMNISLRGIVSNVRTGTDTIATASSEIAAGNLDLSSRTEQQASALE 300 KDET QLLQAL M +L IV NVR G++ +ATAS+EIA GN DLS+RTEQQASALE Sbjct: 241 EGKDETAQLLQALSAMKDNLARIVGNVRQGSEGVATASAEIAQGNNDLSARTEQQASALE 300 Query: 301 ETASSMEELISTVKQNADNARQANQLAVSASEIATQGGGVVGQVVDTMGAINDSSRKIVD 360 ETA+SMEEL +TV+QNADNARQANQLA SAS +A +GG VV +VV+TM INDSS+KI D Sbjct: 301 ETAASMEELSATVRQNADNARQANQLAQSASTVAIKGGEVVSRVVETMKGINDSSKKISD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKVLIND 420 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLA RSA AAKEIK LIND Sbjct: 361 IIQVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAGRSADAAKEIKGLIND 420 Query: 421 SVEKVGNGSKLVEQAGATMAEVVNSVRRVTDIVAEISSASEEQTTGIEQINHAITQMDQV 480 SV++V GS LV+QAG TM EVV+S+RRVTDI+ EIS+AS EQ+ G+ Q++ A+TQMDQV Sbjct: 421 SVQRVEQGSTLVDQAGVTMTEVVSSIRRVTDIMGEISAASTEQSQGVAQVSEAVTQMDQV 480 Query: 481 TQQNAALVEEAAAAAASMQSQADSLAQLVSVFTLS-----GTPALPAARRTIDI------ 529 TQQNAALVEE AAAA+S++SQA L VSVF LS G P A +RT + Sbjct: 481 TQQNAALVEEMAAAASSLKSQAQELVGTVSVFKLSQSQGAGLPDSSAPQRTRSVRSAPAP 540 Query: 530 -----------TPSEPRLR 537 TP++P +R Sbjct: 541 APAPAARKLGNTPAKPAIR 559 >ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] gb|ABR89417.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 603 bits (1556), Expect = e-170, Method: Compositional matrix adjust. Identities = 325/515 (63%), Positives = 396/515 (76%), Gaps = 2/515 (0%) Query: 1 MNIIGNMRIGKRLALGFAVILAFSIVITAIGIWRLQTVSSATREMMSQPLLKERLIGDWY 60 M NM+IG RL LGF V+LA SI I A GI +L VS+ TR M+ P+ KER++ DW Sbjct: 1 MIFFSNMKIGARLMLGFGVVLALSIAIAADGIRQLHAVSAITRSMLELPIAKERMVSDWA 60 Query: 61 ANLASGIRRTIAIAKSSDPALGPYFAAEAAASSKGSGEYQKKVEALLESDEEKKLFQKIG 120 A + I RTI +AKS+DPAL + A AA SK S E +K+E LL +D+EK+L+ KI Sbjct: 61 AITKASIARTIGVAKSADPALAQFSAKFAADDSKQSMEIIQKLEPLLNTDQEKELYAKIL 120 Query: 121 EQRKLYLSSRDAINKAKAAGNIEEAERVLEKDFVPASNAYQDTMRQLVELQRKDIDE-TA 179 + RK +L+ R+ + K K G EA + + F+PA++++++ + VEL+RK +D TA Sbjct: 121 DVRKSFLAGREGVMKLKTEGKEAEAAKYFDTTFLPAADSFKNHFTEFVELERKQMDAGTA 180 Query: 180 KHIDIIAEDSRILLLALEGLILVLGVLCAWYLTVGITRPINSAVTISRRVAEGDLTSDVQ 239 + D+ A +R L+L L ++L G+ CAW LT+GITRP+ +AV +RRVA GDLT+D++ Sbjct: 181 QLSDVEAASTRQLML-LSAMVLAFGIFCAWRLTIGITRPLKTAVDAARRVAGGDLTNDIK 239 Query: 240 VGSKDETGQLLQALQDMNISLRGIVSNVRTGTDTIATASSEIAAGNLDLSSRTEQQASAL 299 SKDE GQLL AL+DMN L+ IV VR GT+TI TAS+EIAAGNLDLSSRTEQQAS+L Sbjct: 240 AESKDECGQLLAALKDMNDGLQRIVGEVRLGTETITTASNEIAAGNLDLSSRTEQQASSL 299 Query: 300 EETASSMEELISTVKQNADNARQANQLAVSASEIATQGGGVVGQVVDTMGAINDSSRKIV 359 EETASSMEEL STVKQNADNARQANQLAVSASE+A +GG VV QVV TM +IN+SSRKIV Sbjct: 300 EETASSMEELTSTVKQNADNARQANQLAVSASEVALKGGDVVSQVVQTMSSINESSRKIV 359 Query: 360 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKVLIN 419 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA+AAKEIK LI Sbjct: 360 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASAAKEIKALIG 419 Query: 420 DSVEKVGNGSKLVEQAGATMAEVVNSVRRVTDIVAEISSASEEQTTGIEQINHAITQMDQ 479 DSV KV G+KLV +AGATM E+VNS+RRVTDI+ EI++AS+EQ+ GIEQIN AI QMD Sbjct: 420 DSVGKVDTGNKLVAEAGATMDEIVNSIRRVTDIMGEITAASQEQSAGIEQINQAIGQMDH 479 Query: 480 VTQQNAALVEEAAAAAASMQSQADSLAQLVSVFTL 514 VTQQNA+LVEEAAAAA SMQ QA L Q+V F L Sbjct: 480 VTQQNASLVEEAAAAAESMQDQARKLGQVVGAFKL 514 >ref|ZP_04765383.1| methyl-accepting chemotaxis sensory transducer [Acidovorax delafieldii 2AN] gb|EER57813.1| methyl-accepting chemotaxis sensory transducer [Acidovorax delafieldii 2AN] Length = 527 Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust. Identities = 318/511 (62%), Positives = 403/511 (78%) Query: 6 NMRIGKRLALGFAVILAFSIVITAIGIWRLQTVSSATREMMSQPLLKERLIGDWYANLAS 65 N++IG RL GFA++LA +++T G+WRLQTV+ AT +M QPL ER+I DWY + S Sbjct: 3 NLKIGTRLGGGFALVLALMVLMTLFGLWRLQTVAQATNDMTQQPLAMERMISDWYRYVYS 62 Query: 66 GIRRTIAIAKSSDPALGPYFAAEAAASSKGSGEYQKKVEALLESDEEKKLFQKIGEQRKL 125 G RRT AI KS+DP+L +FA +AA S++ SG+ Q ++E LL + EK+L+ I + R Sbjct: 63 GARRTTAIVKSTDPSLAGFFAEDAAMSTRESGKLQDRIEPLLSNPAEKELWVTIKKARVT 122 Query: 126 YLSSRDAINKAKAAGNIEEAERVLEKDFVPASNAYQDTMRQLVELQRKDIDETAKHIDII 185 YLSSRD KAKA G +EEAER L + ++PA+ Y ++QL++LQR ID TAK I + Sbjct: 123 YLSSRDQAVKAKADGQLEEAERTLTQVYLPAAEKYMALIQQLLDLQRASIDATAKDIQGV 182 Query: 186 AEDSRILLLALEGLILVLGVLCAWYLTVGITRPINSAVTISRRVAEGDLTSDVQVGSKDE 245 +SR+ L+ L L + +G +CAW+LT GITRP++ AV ++R VA+ DLT+ V+V S+DE Sbjct: 183 YAESRMWLMLLCVLAVAVGGVCAWWLTHGITRPLSEAVRVARAVADNDLTTTVEVHSRDE 242 Query: 246 TGQLLQALQDMNISLRGIVSNVRTGTDTIATASSEIAAGNLDLSSRTEQQASALEETASS 305 TGQL++ALQ MN SL +V VR GT+ IATAS++I AGN DLSSRTEQQAS+LEETA+S Sbjct: 243 TGQLMEALQHMNTSLAQVVGRVRAGTEGIATASNQIDAGNQDLSSRTEQQASSLEETAAS 302 Query: 306 MEELISTVKQNADNARQANQLAVSASEIATQGGGVVGQVVDTMGAINDSSRKIVDIISVI 365 MEEL STV+QNADNARQANQLA SAS++A QGG VV VVDTM AIN SSRKI DII VI Sbjct: 303 MEELTSTVRQNADNARQANQLASSASQVAMQGGQVVAHVVDTMSAINASSRKIADIIGVI 362 Query: 366 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKVLINDSVEKV 425 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAK+IK LI++SV KV Sbjct: 363 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKDIKTLIDNSVGKV 422 Query: 426 GNGSKLVEQAGATMAEVVNSVRRVTDIVAEISSASEEQTTGIEQINHAITQMDQVTQQNA 485 G++ V +AG TM +V+SV+RVTDI+AEI++AS+EQ++GI+Q++ AI+QMDQVTQQNA Sbjct: 423 DEGTQQVAEAGKTMDAIVDSVKRVTDIMAEIAAASQEQSSGIDQVHQAISQMDQVTQQNA 482 Query: 486 ALVEEAAAAAASMQSQADSLAQLVSVFTLSG 516 ALVEEAAAA S+++QA LAQ VSVF ++G Sbjct: 483 ALVEEAAAATGSLKAQAAQLAQAVSVFRIAG 513 >ref|YP_984491.1| methyl-accepting chemotaxis sensory transducer [Acidovorax sp. JS42] gb|ABM40415.1| methyl-accepting chemotaxis sensory transducer [Acidovorax sp. JS42] Length = 579 Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust. Identities = 324/511 (63%), Positives = 397/511 (77%) Query: 6 NMRIGKRLALGFAVILAFSIVITAIGIWRLQTVSSATREMMSQPLLKERLIGDWYANLAS 65 N+ IG RL GFA++L ++TA G+WRLQTV+ AT EM QPL ER+I DWY + S Sbjct: 3 NLSIGTRLGGGFALVLLLMALMTAFGVWRLQTVAQATNEMTQQPLAVERMISDWYRYVYS 62 Query: 66 GIRRTIAIAKSSDPALGPYFAAEAAASSKGSGEYQKKVEALLESDEEKKLFQKIGEQRKL 125 RRT AI KS+DP+LG +FAA+ A S++ S E QK++E LL SDEEK L+ I + R Sbjct: 63 AARRTSAIVKSTDPSLGQFFAADTATSTRESAELQKRIETLLTSDEEKALWADIQKARVT 122 Query: 126 YLSSRDAINKAKAAGNIEEAERVLEKDFVPASNAYQDTMRQLVELQRKDIDETAKHIDII 185 YLSSRD KAKA G +EEAER+L + ++PA++ Y +++L+++QR ID TA+ I++ Sbjct: 123 YLSSRDQAVKAKAEGQLEEAERLLTQVYLPATDQYVALIQRLLDMQRARIDATAQGINVT 182 Query: 186 AEDSRILLLALEGLILVLGVLCAWYLTVGITRPINSAVTISRRVAEGDLTSDVQVGSKDE 245 SR+ L+ L L L G LCAW+LT GITRP+ AV ++R VA DLTS VQV S+DE Sbjct: 183 YGQSRLWLIVLGVLGLGAGALCAWWLTRGITRPLAQAVQVARAVAANDLTSRVQVDSRDE 242 Query: 246 TGQLLQALQDMNISLRGIVSNVRTGTDTIATASSEIAAGNLDLSSRTEQQASALEETASS 305 TGQLLQALQ+MN SL +V+ VR+GTD IATASS++ AGN DLSSRTE+QAS+L+ETA+S Sbjct: 243 TGQLLQALQEMNASLSQVVARVRSGTDGIATASSQLDAGNQDLSSRTEEQASSLQETAAS 302 Query: 306 MEELISTVKQNADNARQANQLAVSASEIATQGGGVVGQVVDTMGAINDSSRKIVDIISVI 365 ME+L STV+QNADNARQANQLA SA++ ATQGG VV VV TMGAIN SSRKI DII VI Sbjct: 303 MEQLTSTVRQNADNARQANQLASSAAQTATQGGQVVAGVVQTMGAINASSRKISDIIGVI 362 Query: 366 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKVLINDSVEKV 425 D IAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LAQRSAAAAK+IK LI DSV KV Sbjct: 363 DSIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRALAQRSAAAAKDIKGLIGDSVAKV 422 Query: 426 GNGSKLVEQAGATMAEVVNSVRRVTDIVAEISSASEEQTTGIEQINHAITQMDQVTQQNA 485 GS VE+AG TM +V SV+RV+D+VAEI++AS+EQ+ GIEQ++ AITQMDQVTQQNA Sbjct: 423 EEGSHQVEEAGRTMDAIVQSVQRVSDLVAEITAASQEQSAGIEQVHQAITQMDQVTQQNA 482 Query: 486 ALVEEAAAAAASMQSQADSLAQLVSVFTLSG 516 ALVEEA AA S+++QA LAQ VSVF + G Sbjct: 483 ALVEEATAATGSLKAQAGQLAQAVSVFRVEG 513