BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0114.p         (70 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002360433.1| beta-lactamase [Methylocella silvestris BL2]...    90   1e-16
ref|YP_532595.1| Beta-lactamase [Rhodopseudomonas palustris BisB...    87   7e-16
ref|YP_004752033.1| beta-lactamase [Collimonas fungivorans Ter33...    87   9e-16
ref|YP_433547.1| beta-lactamase class A [Hahella chejuensis KCTC...    84   6e-15
ref|YP_425320.1| twin-arginine translocation pathway signal [Rho...    83   1e-14

>ref|YP_002360433.1| beta-lactamase [Methylocella silvestris BL2]
 gb|ACK49071.1| Beta-lactamase [Methylocella silvestris BL2]
          Length = 291

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/63 (61%), Positives = 52/63 (82%)

Query: 1   VRAGMQQGWKVGDKTGSGDYGTTNTVAIIWPPQRAPLLASIYLTETKASEEQRNAVLAEV 60
           +R+G  +GW+VGDKTGSG+  TTN +AIIWPPQRAPL+ + Y TE +AS  +R+AVL+EV
Sbjct: 224 LRSGAPKGWRVGDKTGSGENNTTNDIAIIWPPQRAPLIVTAYYTEARASAVERDAVLSEV 283

Query: 61  GKL 63
           G+L
Sbjct: 284 GRL 286


>ref|YP_532595.1| Beta-lactamase [Rhodopseudomonas palustris BisB18]
 gb|ABD88276.1| Beta-lactamase [Rhodopseudomonas palustris BisB18]
          Length = 299

 Score = 87.4 bits (215), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 50/70 (71%)

Query: 1   VRAGMQQGWKVGDKTGSGDYGTTNTVAIIWPPQRAPLLASIYLTETKASEEQRNAVLAEV 60
           +RAG+   W+VGDKTGSG +G++N VA+IWP  RAPL+ + YLTET  S++QRNA  A V
Sbjct: 230 LRAGLPSSWRVGDKTGSGSHGSSNDVAVIWPQDRAPLIIAAYLTETAGSDDQRNATHASV 289

Query: 61  GKLIVGGLNR 70
            + I   L R
Sbjct: 290 ARSIAASLTR 299


>ref|YP_004752033.1| beta-lactamase [Collimonas fungivorans Ter331]
 gb|AEK61210.1| Beta-lactamase [Collimonas fungivorans Ter331]
          Length = 302

 Score = 87.0 bits (214), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 40/63 (63%), Positives = 50/63 (79%)

Query: 1   VRAGMQQGWKVGDKTGSGDYGTTNTVAIIWPPQRAPLLASIYLTETKASEEQRNAVLAEV 60
           +RA +  GW+VGDKTGSG YG+TN + +++PP RAPLL + YLT TKASE  RNA LAEV
Sbjct: 233 LRALLPAGWRVGDKTGSGAYGSTNDIGMLFPPGRAPLLVAAYLTGTKASEATRNATLAEV 292

Query: 61  GKL 63
           G+L
Sbjct: 293 GRL 295


>ref|YP_433547.1| beta-lactamase class A [Hahella chejuensis KCTC 2396]
 gb|ABC29122.1| Beta-lactamase class A [Hahella chejuensis KCTC 2396]
          Length = 299

 Score = 84.3 bits (207), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 33/64 (51%), Positives = 51/64 (79%)

Query: 1   VRAGMQQGWKVGDKTGSGDYGTTNTVAIIWPPQRAPLLASIYLTETKASEEQRNAVLAEV 60
           +RAG+ Q W++GD+TG G YG+TN VA+IWPP R PL+ ++Y+TET+A+ + RN  +A+V
Sbjct: 230 LRAGLPQDWRIGDRTGGGAYGSTNDVAVIWPPGREPLIVTVYITETEAAFDDRNKAIADV 289

Query: 61  GKLI 64
           G+ +
Sbjct: 290 GRAV 293


>ref|YP_425320.1| twin-arginine translocation pathway signal [Rhodospirillum rubrum
           ATCC 11170]
 gb|ABC21033.1| Twin-arginine translocation pathway signal [Rhodospirillum rubrum
           ATCC 11170]
 gb|AEO46699.1| twin-arginine translocation pathway signal [Rhodospirillum rubrum
           F11]
          Length = 300

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 50/64 (78%)

Query: 1   VRAGMQQGWKVGDKTGSGDYGTTNTVAIIWPPQRAPLLASIYLTETKASEEQRNAVLAEV 60
           +RAG+ + W++GDKTG GD+GT N VA++WPP R PL+ ++Y+T+T AS E RN  +A++
Sbjct: 230 LRAGLPKDWRIGDKTGGGDHGTMNDVAVVWPPGRQPLIIALYMTQTTASFEDRNRAIADI 289

Query: 61  GKLI 64
           G+ +
Sbjct: 290 GRTL 293