BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0111.p         (77 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776737.1| LysR family transcription regulator protein ...   141   4e-32
ref|ZP_04762664.1| transcriptional regulator, LysR family [Acido...   128   2e-28
ref|YP_004752032.1| LysR family transcriptional regulator [Colli...   125   2e-27
ref|YP_433546.1| transcriptional regulator [Hahella chejuensis K...   123   1e-26
ref|YP_004235135.1| LysR family transcriptional regulator [Acido...   123   1e-26

>ref|YP_003776737.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ64829.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 287

 Score =  141 bits (355), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 66/73 (90%), Positives = 70/73 (95%)

Query: 1   VLGQFENGRMREVLTLGVVGTFAVGWLMPRLREFQQTYPFVDLRLLTNNNRVDLAGEGLD 60
           VL QFE+GR REVLT+GVVGTFAVGWLMPRLR+FQQ +PFVDLRLLTNNNRVDLAGEGLD
Sbjct: 80  VLAQFEDGRRREVLTVGVVGTFAVGWLMPRLRQFQQQHPFVDLRLLTNNNRVDLAGEGLD 139

Query: 61  YAIRFGDGAWHGT 73
           YAIRFGDGAWHGT
Sbjct: 140 YAIRFGDGAWHGT 152


>ref|ZP_04762664.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
 gb|EER60514.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
          Length = 289

 Score =  128 bits (322), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/73 (80%), Positives = 63/73 (86%)

Query: 1   VLGQFENGRMREVLTLGVVGTFAVGWLMPRLREFQQTYPFVDLRLLTNNNRVDLAGEGLD 60
            L QF   R REVLT+G VGTF VGWL+PRLREFQQ  PFVDLRLLT+NNRVD+AGEGLD
Sbjct: 80  ALEQFSQSRPREVLTVGAVGTFTVGWLLPRLREFQQACPFVDLRLLTHNNRVDIAGEGLD 139

Query: 61  YAIRFGDGAWHGT 73
           YAIRFGDGAWHGT
Sbjct: 140 YAIRFGDGAWHGT 152


>ref|YP_004752032.1| LysR family transcriptional regulator [Collimonas fungivorans
           Ter331]
 gb|AEK61209.1| transcriptional regulator, LysR family [Collimonas fungivorans
           Ter331]
          Length = 293

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/74 (79%), Positives = 66/74 (89%), Gaps = 1/74 (1%)

Query: 1   VLGQFENGR-MREVLTLGVVGTFAVGWLMPRLREFQQTYPFVDLRLLTNNNRVDLAGEGL 59
           VL QF +GR +REVLT+G VGTFAVGWL+PRLR+FQQ +PFVD RL TNNNRVD+AGEGL
Sbjct: 87  VLQQFGDGRRLREVLTVGAVGTFAVGWLIPRLRDFQQAHPFVDFRLFTNNNRVDIAGEGL 146

Query: 60  DYAIRFGDGAWHGT 73
           DYAIRFGDGAWH T
Sbjct: 147 DYAIRFGDGAWHST 160


>ref|YP_433546.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gb|ABC29121.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 298

 Score =  123 bits (308), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 55/75 (73%), Positives = 65/75 (86%)

Query: 2   LGQFENGRMREVLTLGVVGTFAVGWLMPRLREFQQTYPFVDLRLLTNNNRVDLAGEGLDY 61
           L + E G++REVL+LGVVGTFAVGWL+PRL +FQQ +PFV++RL TNNNRVD+A EGLDY
Sbjct: 84  LSRLEGGQVREVLSLGVVGTFAVGWLLPRLADFQQQHPFVEIRLSTNNNRVDIAAEGLDY 143

Query: 62  AIRFGDGAWHGTXGA 76
           AIRFGDGAWHG   A
Sbjct: 144 AIRFGDGAWHGVDAA 158


>ref|YP_004235135.1| LysR family transcriptional regulator [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gb|ADX46568.1| transcriptional regulator, LysR family [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 301

 Score =  123 bits (308), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/73 (79%), Positives = 62/73 (84%)

Query: 1   VLGQFENGRMREVLTLGVVGTFAVGWLMPRLREFQQTYPFVDLRLLTNNNRVDLAGEGLD 60
            L Q  + R REVLT+G VGTFAVGWL+PRL+ FQQ  PFVDLRLLTNNNRVDLAGEGLD
Sbjct: 80  ALAQCSDTRPREVLTVGAVGTFAVGWLLPRLQAFQQQCPFVDLRLLTNNNRVDLAGEGLD 139

Query: 61  YAIRFGDGAWHGT 73
            AIRFGDGAWHGT
Sbjct: 140 CAIRFGDGAWHGT 152